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Supplementary Figure 1, Postnikova et al. Mol Gen Genom
Alignment of the alfalfa bHLH domain. Aromatic amino acids (aa) FYW (blue), basic aa KRH (red), aliphatic aa ILMV (green),
hydrophilic aa GPST (yellow).
VIIIc
IX
XIV
XI
X
Va
XII
VIIa+b
IVa
Ib
XV
II
Vb
IVc
IIIa+b
IVd
IIb
Ia
Supplementary Figure 2, Postnikova et al. Mol Gen Genom
Phylogenetic analysis of the bHLH proteins from A. thaliana (green circles), M. truncatula (blue circles) and M. sativa (red circles).
Tentative locations of the previously described A. thaliana subfamilies are indicated above the tree in Roman numerals.
IIa
IIb
IXc
Ib
IVa,b
VI
Ia,b
VIIa
VIIa
Xa,b
IIIe
IXa,c
11
IIa
VIIIb
Xa,b
Xa,b
Vb
IIIb,c,d
VIa
Supplementary Figure 3, Postnikova et al., Mol Gen Genom.
Phylogenetic analysis of the ERF proteins from A. thaliana (green circles), M. truncatula (blue circles) and M. sativa (red circles).
Tentative locations of the previously described A. thaliana ERF subfamilies (Roman numerals) indicated in squire brackets.
Novel alfalfa clade numbered as in Fig. 2 is highlighted in yellow.
IV-2
V
VI-2
VIII-1
III-2
VI-1
VII-1
III-1
VII-2
III-3
IX-1
I-1
I-4
IV-2
II-1
1,2
II-3
I-2
Supplementary Figure 4, Postnikova et al., Mol Gen Genom. Phylogenetic analysis of the NAC proteins from A. thaliana
(green circles), M. truncatula (blue circles) and M. sativa (red circles). Tentative locations of the previously described A. thaliana
NAC subfamilies (Roman numerals) indicated in squire brackets. Novel alfalfa clade numbered as in Figure 4 is highlighted in
yellow.
Supplementary Figure 5, Postnikova et al., Mol Gen Genom
Alignment of alfalfa and M. truncatula NAC proteins from the novel clade with representative TFs of
A. thaliana NAC
III
IIb
IId
IIe
ICT
INT
IIc
IIa
Supplementary Figure 6, Postnikova et al., Mol Gen Genom. Phylogenetic analysis of the WRKY proteins from A. thaliana (green
circles), M. truncatula (blue circles) and M. sativa (red circles). Tentative locations of the previously described A. thaliana subfamilies
are indicated above the tree in Roman numerals. INT and IC represent the N-terminal and C-terminal domains from the Group I.