Download Pymol - SienaBioGrafiX

PyMol install & resources
Python
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https://www.python.org/download/releases/2.7.6/
Windows x86 MSI Installer (2.7.6)
Binaries
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http://www.lfd.uci.edu/~gohlke/pythonlibs/
pymol-1.7.1.0.win32-py2.7.exe
Source code
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http://www.pymol.org/
Manual
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http://pymol.sourceforge.net/newman/userman.pdf
Wiki
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http://www.pymolwiki.org/
Tutorial
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http://www.pymolwiki.org/index.php/Practical_Pym
ol_for_Beginners
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http://ihome.cuhk.edu.hk/~b102142/pymol/pymol_t
utorial.html - 1w2i
L’importanza della forma delle molecole:
l’influenza aviaria e lo zanamivir
Structures of influenza A proteins and insights into antiviral drug
targets. Nat Struct Mol Biol. 2010; 17(5): 530–538.
zanamivir (yellow) oseltamivir (green) sialic acid (gray)
Active site display
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>fetch 3ckz
Press S button
>select zanamivir, resn zmr
>select pocketatom, 3ckz near_to 5 of zanamivir
show (pocketatom) as surface
select pocketres, byres pocketatom
>residuelist = []
>iterate pocketres and name CA, residuelist.append((resi, resn));
>for pair in residuelist: print pair[0], pair[1]
Enzyme Classification Search : EC=* and Ligand Search : Has free
ligands=yes and Representative Structures at 100% Sequence
Identity