Download Reactome-HomePage Containes five sections (from top

Reactome
Information maintained by cross-referenced
We will talk on:
 Reactome: Data base of reactions , pathways of
human biology.
 Simple search:
protein name -> reactions ,pathway.
pathway -> reactions, proteins .
 Tools:
SkyPraint
BioMart.
 Advantage, disadvantage
Reactome-statistics
Reactome-HomePage
contains five sections (from top to bottom):
Reactome-HomePage
Containes five sections (from top to bottom):
 The Navigator bar provides access to the rest of the Reactome web site:
 The Search panel allows you to perform text-based searches on Reactome.
The Search panel
Results
Reactome-HomePage
Containes five sections (from top to bottom):
 The Navigator bar provides access to the rest of the Reactome web site:
 The Search panel allows you to perform text-based searches on Reactome.
 The Species chooser allows you to choose a species .
Species chooser
The reactions map
The reactions map and the topics list
The reactions map and topics list
The reactions map and topics list
Blue arrow: If the reaction is confirm by exp
Pink arrow: if the reaction has not been confirmed directly but has been
inferred manually from another reaction
(either in the selected species or another species)
Green arrow: if the reaction has been inferred computationally
Grey arrow :Reactions that are not part of the selected Pathway Topic
The reactions map and topics list
Results
Results
Results
Results
Input
Previous reaction
Output
Next reaction
Reactome-Tools
• Reactome-SkyPainter
• BioMart
Reactome-SkyPainter
Reactome-SkyPainter
Reactome-SkyPainter-Results
Reactome-BioMart
Reactome-BioMart
Reactome-BioMart-Results
Reactome-BioMart
In summary
•
•
•
•
•
•
Pathways, reactions in human biology
Graphic map
BioMart
Skypainter
But:
No description of the methods in the result
pages