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Genome Browsing
with the Ensembl Genome Browser
http://www.ensembl.org/
Genome Browsers
UCSC
NCBI
http://genome.ucsc.edu/
Ensembl
http://www.ensembl.org/
Ensembl Genome Browser
Human Genome
MapView
ContigView - Overview
CytoView
ContigView - Detailed view
GeneView
GeneSpliceView
GeneSNPView
GeneView → TransView/ProtView
TransView
TransView (continued)
ProtView
ProtView - Sequence
ProtView → DomainView/FamilyView
DomainView
FamilyView
ContigView → FeatureView
FeatureView
MapView → SyntenyView
SyntenyView
ContigView → MultiContigView
MultiContigView - Overview
MultiContigView – Detailed view
Other Ensembl Features
 Blast searching
 Data mining (Biomart)
 Select data based on advanced criteria (e.g.
genome location, protein domains, functional
annotation, expression, orthology, etc.)
 Retrieve in various formats (HTML, Excel, text)
 Data downloading (FTP)
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