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Dr. Locke’s “Muller’s Morphs” Cheat-Sheet. Oct 15’04 Every allele can be classified into one of Muller’s Morph (MM). The types of mutations at a locus provide information on how the gene and its product are acting, and how it is functioning. The first attribute is to determine whether the mutation is dominant or recessive to the wild type allele. If m/+ shows a wild type phenotype then the mutation is recessive to wild type and is either amorphic or hypomorphic. If m/+ shows a mutant phenotype then the mutation is dominant to wild type and is most likely to be neomorphic, antimorphic, or hypermorphic, although it could be either amorphic or hypomorphic as well. Type of morph A morphic Dominant or recessive. recessive Dominant HYPO morphic recessive Gain/loss Freq. of function Descrip. of m/+ mutant function None wild type Loss Most -complete common Loss uncommon None: mutant -complete Haploinsufficient Loss common Reduced wild type -partial Dominant Loss -partia Rare HYPER morphic Dominant Gain in normal Rare NEO morph ANTI morph Dominant Reduced: mutant Haploinsufficient Increased mutant m/m m/del m/dup Key mutant = m/del Mutant (more severe) less mutant than m/del more mutant than m/+ more mutant than m/+ mutant = m/m mutant (more severe) more mutant than m/m wild type Recessive & m/del = m/m Dominant & m/del = m/m wild type m/del is more mutant than m/m more mutant than m/m less mutant than m/+ wild type m/del is more mutant than m/m More mutant than m/+ - m/del is less mutant than m/+ - m/dup is more mutant than m/+ - dup/+ may mimic mutant m/+ = m/m = m/del m/+ is more mutant than m/dup wild type? Gain in Uncommon New and mutant mutant mutant mutant new different Dominant Gain of Very rare Works mutant less against against mutant wild type wild type Haplo-insufficent: a locus where two normal copies of gene product are needed for a normal phenotype. Loss of one (or part of one) copy results in a mutant phenotype. READ: Pages 535-537 Griffiths 8th Edition. 10/16/07 BIOLOGY 207 - Dr.Locke Muller's Morphs See pages 535-537 in Griffiths 8th Edition. Muller, H. J. (1932). Further studies on the nature and causes of gene mutations. Proc. 6th Inter. Congr. Genet. 1, 213-255. Note: (1) Each of these different "morphs" are mutant forms (mutant alleles) derived from wild type alleles by changes in the DNA sequence. (2) Any gene can be changed (mutated) into one (or more) of these different morphs, although not every gene can be mutated into every morph type. If you have any questions about this supplementary page please see Dr. Locke. Amorph – most common type of mutation • - mutation that causes the absence of any gene product function. • - also known as a "null" mutation • - also known as a complete loss-of-function mutation Molecular level explanation for a protein-coding gene. Genetic/phenotypic level of expression Changes in the DNA base pair sequence of the amorphic allele RECESSIVE: may cause one or more of the following: - amorphic mutations of most genes act as recessive to wild - no gene - change in the DNA sequence removed the gene type. from the chromosome. - They are haplo-sufficient – only one functional copy is Gene is present but: needed for a wild type phenotype. - no transcription (e.g. changed DNA sequence in the e.g. white gene in Drosophila promoter or enhancer/regulatory elements.) - a white null = wnull - normal transcription but aberrant processing of the w+/w+ is wild type and red eyed transcript (e.g. base pair changes that cause the mature w+/wnull is wild type and red eyed mRNA to not (or incorrectly) splice introns, therefore the wnull/wnull is mutant and white eyed translated amino acid sequence would be altered and not function.) DOMINANT: - no translation (e.g. changes in the base pair sequences - With some genes the amorphic mutations are dominant to would preclude the mRNA from binding to the ribosome for wild type proper translation.) -They are haplo-insufficient – having only one functional copy - non-functional protein product (normal translation, results in a mutant phenotype. processing, translation but base pair changes a key amino acid e.g. Minute locus in Drosophila Min the polypeptide sequence so it is not functional - no activity ) M+/M+ is wild type and long bristled M+/M- is mutant and short bristled M-/M- is dead, a recessive lethal We conclude that for this gene the organism needs both copies to have a wild type phenotype. Loss of one copy (an amorphic mutation) produces a mutant phenotype. The classic amorphic mutation is a deletion (absence of the gene) : Identification of an amorphic mutation: Recessive and Dominant: Phenotype of m-/m- is the same as phenotype of m-/del if the wallele is an amophic mutation. Wild type m-/m- = m-/del mutant. Deletions do not revert. Hypomorph – common type of mutation • - mutation that causes a reduction in normal gene product function. • - also known as a "leaky" mutation • - also known as a partial loss-of-function mutation Molecular level explanation for a protein-coding gene. Changes in the DNA base pair sequence of the hypomorphic allele may cause one or more of the following: Gene present but: Biol207 Dr. Locke section Muller!s Morphs Genetic/phenotypic level of expression - hypomorphic mutations of most (all?) genes usually act as recessive to wild type. e.g. white-apricot (wa ) allele of the white gene in Drosophila Help pages page 1 10/16/07 - reduced transcription (e.g. changed DNA sequence in the w+/w+ is wild type and red eyed promoter or enhancer/regulatory elements that reduces the w+/wa is wild type and red eyed (w+ is dominant to wa) level of transcription.) wa/wa is mutant and apricot eye colour (not a white eye) - normal transcription but aberrant processing of the wa/wnull is mutant and has a less coloured eye (more mutant) transcript (e.g. base pair changes that cause the mature wnull/ wnull has a white eye mRNA to incorrectly splice introns, therefore the translated - hypomorphic mutations theoretically could be dominant to protein sequence would be altered and function at a reduced wild type - no example is provided – would be haplo-insufficient. level.) The classic hypomorphic mutation is usually either an altered - reduced translation (e.g. changes in the base pair amino acid that makes the polypeptide less active or a reduction sequences would reduce the efficiency of the mRNA binding to in transcription that results in less normal transcript. the ribosome for translation.) Identification of a hypomorphic mutation: - reduced-function protein product (normal translation, Phenotype of wa/wa is more wild type (redder in colour) than the processing, translation but base pair changes certain amino phenotype of wa/del heterozygote. acid in the polypeptide sequence so it's function (activity) is Wild type wa/wa > wa/del mutant reduced.) (where > means more wild type than or more normal than) Hypermorph – rare type of mutation • - gain of function • - mutation that causes a an increase in expression of normal gene product function. Molecular level explanation for a protein-coding gene. Genetic/phenotypic level of expression Changes in the DNA base pair sequence of the hypermorphic - hyper-morphic mutations of most (all?) genes usually act as allele may cause one or more of the following: a dominant to wild type since they are a gain-of-function . Gene duplication - extra copy(ies) of the gene - no example is provided but if an extra dosage give a One gene present but: phenotype (dominant) implies that the product is dose sensitive. - Increased transcription (e.g. changed DNA sequence in the The classic hyper-morphic mutation is usually a gene promoter or enhancer/regulatory elements that increases the duplication that results in more normal transcript being level of transcription.) produced. - increased translation (e.g. changes in the base pair Identification of a hyper-morphic mutation: sequences would increase the efficiency of the mRNA binding Phenotype of mutation/+ is more mutant than the phenotype of to the ribosome for translation.) mutation/del if mutant allele is a hypermophic mutation. - increased-function protein product (normal translation, Mutation homozygote is more mutant than mutation/+. processing, translation but base pair changes certain amino Duplication may mimic the mutation and will make the mutation acid in the polypeptide sequence so it's function (activity) is more severe. normal but increased in amount.) Wild type m/del > m/+ > m/m > m/Dp mutant (where > means “more wild type than” or “more normal than”) Dose of wild type affects phenotype. Duplications revert at a high frequency. Neomorph – uncommon type of mutation • - gain of function • - mutation that causes a new function from the mutant gene. Molecular level explanation for a protein-coding gene. Changes in the DNA base pair sequence of the neomorphic allele may cause one or more of the following: Gene present but: - new transcription (e.g. changed DNA sequence in the promoter or enhancer/regulatory elements that makes new transcription - either temporally or tissue specific.) - new-function protein product (normal translation, processing, translation but base pair changes certain amino acid in the polypeptide sequence so it acquires a new function (activity) that is different from the normal function.) Biol207 Dr. Locke section Muller!s Morphs Genetic/phenotypic level of expression - neo-morphic mutations of most (all?) genes act as a dominant to wild type since they are a gain-of-function . - Example: Antennapedia mutation in Drosophila (see class notes) The classic neo-morphic mutation is usually a translocation that moves a new regulatory element next to a gene so it is expressed in a new tissue or at a new time during development. Identification of a neo-morphic mutation: Phenotype of mutation/+ is equally mutant to the phenotype of mutation/del if mutant allele is a neo-morphic mutation. Wild type m/del = m/+ = m/m = m/Dp mutant Dose of wild type allele has no effect on phenotype. Help pages page 2 10/16/07 Antimorph – very rare type of mutation - also known as “Dominant-negative” mutation • - gain of function • - mutation that causes the function from the mutant gene to work against the normal gene. Molecular level explanation for a protein-coding gene. Changes in the DNA base pair sequence of the anti-morphic allele may cause one or more of the following: Gene present but: - new-function protein product that works against the normal product (normal translation, processing, translation but base pair changes certain amino acid in the polypeptide sequence so it acquires the ability to work against the normal function.) Biol207 Dr. Locke section Muller!s Morphs Genetic/phenotypic level of expression - anti-morphic mutations of most (all?) genes usually act as a dominant to wild type since they are a gain-of-function. -Example: Stubble-bristle mutation in Drosophila The classic anti-morphic mutation is usually an amino acid change that prevents a polypeptide from functioning in a multimeric protein complex. Identification of an anti-morphic mutation: Phenotype of mutation/+ is more mutant than the phenotype of mutation/Dp if mutant allele is an anti-mophic mutation. mutation/+ > mutation/+/+ Wild type m/Dp > m/+ > m/del (lethal?) mutant The more normal product (or gene dosage) the more wild type the phenotype. Help pages page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