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Perspectives A g u i d e t o d r u g d i s c o v e ry — o p i n i o n Protein therapeutics: a summary and pharmacological classification Benjamin Leader, Quentin J. Baca and David E. Golan Abstract | Once a rarely used subset of medical treatments, protein therapeutics have increased dramatically in number and frequency of use since the introduction of the first recombinant protein therapeutic — human insulin — 25 years ago. Protein therapeutics already have a significant role in almost every field of medicine, but this role is still only in its infancy. This article overviews some of the key characteristics of protein therapeutics, summarizes the more than 130 protein therapeutics used currently and suggests a new classification of these proteins according to their pharmacological action. Proteins have the most dynamic and diverse role of any macromolecule in the body, catalysing biochemical reactions, forming receptors and channels in membranes, providing intracellular and extracellular scaffolding support, and transporting molecules within a cell or from one organ to another. It is currently estimated that there are 25,000–40,000 different genes in the human genome, and with alternative splicing of genes and post-translational modification of proteins (for example, by cleavage, phosphory lation, acylation and glycosylation), the number of functionally distinct proteins is likely to be much higher1–3. Viewed from the perspective of disease mechanisms, these estimates pose an immense challenge to modern medicine, as disease may result when any one of these proteins contains mutations or other abnormalities, or is present in an abnormally high or low concentration. Viewed from the perspective of therapeutics, however, these estimates represent a tremendous opportunity in terms of harnessing protein therapeutics to alleviate disease. At present, more than 130 different proteins or peptides are approved for clinical use by the US Food and Drug Administration (FDA), and many more are in development. Protein therapeutics have several advantages over small-molecule drugs. First, proteins often serve a highly specific and complex set of functions that cannot be mimicked by simple chemical compounds. Second, because the action of proteins is highly specific, there is often less potential for protein therapeutics to interfere with normal biological processes and cause adverse effects. Third, because the body naturally produces many of the proteins that are used as therapeutics, these agents are often well tolerated and are less likely to elicit immune responses. Fourth, for diseases in which a gene is mutated or deleted, protein therapeutics can provide effective replacement treatment without the need for gene therapy, which is not currently available for most genetic disorders. Fifth, the clinical development and FDA approval time of protein therapeutics may be faster than that of small-molecule drugs. A study published in 2003 showed that the average clinical development and approval time was more than 1 year faster for 33 protein therapeutics approved between 1980 and 2002 than for 294 small-molecule drugs approved during the same time period4. Last, because proteins are unique in form and function, companies are able to obtain far-reaching patent protection for protein therapeutics. The last two advantages make proteins attractive from a financial perspective compared with small-molecule drugs. A relatively small number of protein therapeutics are purified from their native nature reviews | drug discovery source, such as pancreatic enzymes from hog and pig pancreas5,6, and α‑1-proteinase inhibitor from pooled human plasma7,8, but most are now produced by recombinant DNA technology and purified from a wide range of organisms. Production systems for recombinant proteins include bacteria, yeast, insect cells, mammalian cells, and transgenic animals and plants9–13. The system of choice can be dictated by the cost of production or the modifications of the protein (for example, glycosylation, phosphorylation or proteolytic cleavage) that are required for biological activity. For example, bacteria do not perform glycosylation reactions, and each of the other biological systems listed above produces a different type or pattern of glycosylation. Protein glycosylation patterns can have a dramatic effect on the activity, half-life and immunogenicity of the recombinant protein in the body. For example, the half-life of native erythropoietin, a growth factor important in erythrocyte production (see below), can be lengthened by increasing the glycosylation of the protein. Darbepoetin-a is an erythro poietin analogue that is engineered to contain two additional amino acids that are substrates for N‑linked glycosylation reactions. When expressed in Chinese hamster ovary cells, the analogue is synthesized with five rather than three N‑linked carbohydrate chains; this modification causes the half-life of darbepoetin to be threefold longer than that of erythropoietin14. Perhaps the best example of trends in the production and use of protein therapeutics is provided by the history of insulin in the treatment of diabetes mellitus type I (DM‑I) and type II (DM-II). Untreated, DM‑I is a disease that leads to severe wasting and death due to lack of the protein hormone insulin, which signals cells to perform numerous functions related to glucose homeostasis and intermediary metabolism15. In 1922, insulin was first purified from bovine and porcine pancreas and used as a life-saving daily injection for patients with DM‑I16. At least three problems hindered the widespread use of this protein therapy: first, the availability of animal pancreases for purification of insulin; second, the cost of insulin purification from animal volume 7 | january 2008 | 21 © 2008 Nature Publishing Group Perspectives Box 1 | Functional classification of protein therapeutics Protein therapeutics in the tables in this article are organized by function and therapeutic application. The numbers of therapeutics per group reflect the relative difficulty associated with drug development across the various classes of protein therapeutics. Every effort has been made to include in these tables all US Food and Drug Administration (FDA)-approved Group I and Group II protein-based therapies. Groups III and IV present selected examples that highlight the use of proteins in vaccines and diagnostic agents. Group I: protein therapeutics with enzymatic or regulatory activity • Ia: Replacing a protein that is deficient or abnormal (TABLES 1,2). • Ib: Augmenting an existing pathway (TABLES 3,4). • Ic: Providing a novel function or activity (TABLE 5). Endocrine and metabolic disorders with defined molecular aetiologies dominate Group Ia. As more diseases are linked to deficiencies of specific proteins, this class will continue to grow. Group Ib is dominated by therapies that augment haematological and endocrine pathways and immune responses. The many interferon and growth factor therapies in Group Ib effectively treat disease even when their precise pharmacological mechanism of action is unknown. Group Ic demonstrates the rational use of naturally occurring proteins to modify the pathophysiology of human diseases. The future growth of this class depends on understanding protein function in human physiology as well as protein function in other organisms. Group II: protein therapeutics with special targeting activity •IIa: Interfering with a molecule or organism (TABLES 6,7). •IIb: Delivering other compounds or proteins (TABLE 8). Group IIa therapeutics use their special targeting activity to interfere with molecules or organisms by binding specifically to them and blocking their function, targeting them for destruction, or stimulating a signalling pathway. This group has grown as monoclonal antibody technology has matured and will probably expand further as signalling pathways and aetiologies of disease are more clearly identified. Group IIb therapeutics deliver other compounds or proteins to a specific site. This class has great potential to grow, as demonstrated by the breadth of the specifically targeted Group IIa therapies. Group III: protein vaccines •IIIa: Protecting against a deleterious foreign agent. •IIIb: Treating an autoimmune disease. •IIIc: Treating cancer. Although this is currently a small class of therapies, there is great potential for the production of recombinant vaccines that provide broad protection against infectious agents. Similarly, individualized vaccines against cancers are likely to be in great demand. Selected examples of the 57 FDA-approved vaccines in TABLE 9 highlight the use of recombinant protein technology in vaccine production. Many of the FDA-approved vaccines protect against multiple infectious agents and include synthetic, recombinant and purified protein components. A complete list of FDA-approved vaccines may be found at: http://www.fda.gov/cber/vaccine/licvacc.htm. Group IV: protein diagnostics Group IV protein diagnostics, for which selected examples are shown in TABLE 10, are a class that powerfully affect clinical decision-making. These diagnostics use technology and therapeutics developed in other classes to answer clinical questions. This table presents primarily in vivo protein diagnostics, but in vitro protein diagnostics are also critical to medical decision-making and are too numerous to address comprehensively here. pancreas; and third, the immunological reaction of some patients to animal insulin. These problems were addressed by isolating the human insulin gene and engineering Escherichia coli to express human insulin by using recombinant DNA technology. By growing vast quantities of these bacteria, large-scale production of human insulin was achieved. The resulting insulin was abundant, inexpensive, of low immunogenicity and free from other animal pancreatic substances. Recombinant insulin, approved by the US FDA in 1982, was the first commercially available recombinant protein therapeutic, and has been the major therapy for DM‑I (and a major therapy for DM‑II) ever since16–20. Recombinantly produced proteins can have several further benefits compared with non-recombinant proteins. First, transcription and translation of an exact human gene can lead to a higher specific activity of the protein and a decreased chance of immuno logical rejection. Second, recombinant proteins are often produced more efficiently and inexpensively, and in potentially limitless 22 | january 2008 | volume 7 quantity. One striking example is found in the protein-based therapy for Gaucher’s disease, a chronic congenital disorder of lipid metabolism caused by a deficiency of the enzyme β-glucocerebrosidase (also known as glucosylceramidase) that is characterized by an enlarged liver and spleen, increased skin pigmentation and painful bone lesions21,22. At first, β-glucocerebrosidase purified from human placenta was used to treat this disease, but this requires purification of protein from 50,000 placentas per patient per year, which obviously places a practical limit on the amount of purified protein available. A recombinant form of β-glucocerebrosidase was subsequently developed and introduced, which is not only available in sufficient quantities to treat many more patients with the disease, but also eliminates the risk of transmissible (for example, viral or prion) diseases associated with purifying the protein from human placentas23–25. This also illustrates a third benefit of recombinant proteins over nonrecombinant proteins — the reduction of exposure to animal or human diseases. A fourth advantage is that recombinant technology allows the modification of a protein or the selection of a particular gene variant to improve function or specificity. Again, recombinant β-glucocerebrosidase provides an interesting example. When this protein is made recombinantly, a change of amino-acid arginine‑495 to histidine allows the addition of mannose residues to the protein. The mannose is recognized by endocytic carbohydrate receptors on macrophages and many other cell types, allowing the enzyme to enter these cells more efficiently and to cleave the intracellular lipid that has accumulated in pathological amounts, which results in an improved therapeutic outcome23. Last, recombinant technology allows the production of proteins that provide a novel function or activity, as discussed below. The 25 years since the approval of recombinant insulin by the FDA have seen a remarkable expansion in the number of thera peutic applications of proteins. More than 130 proteins (over 95 of which are produced recombinantly) are currently approved for clinical use by the FDA, and many more are in development. An appreciation of the many therapeutic uses of proteins may be facilitated by categorizing such therapies according to their mechanism of action, and, in this article, we summarize currently approved protein therapeutics by suggesting a classification system that is based on their pharmacological action (BOX 1). Examples www.nature.com/reviews/drugdisc © 2008 Nature Publishing Group Perspectives Table 1 | Protein therapeutics replacing a protein that is deficient or abnormal (Group Ia)* Therapeutic Trade name Function Examples of clinical use Endocrine disorders (hormone deficiencies) ‡ Insulin16–20 Humulin, Novolin Regulates blood glucose, shifts potassium into cells Diabetes mellitus, diabetic ketoacidosis, hyperkalaemia ‡ Insulin human inhalation146–149 Exubera Insulin formulated for inhalation with faster onset of action Diabetes mellitus Insulin aspart150; insulin glulisine151; Insulin lispro150 Novolog (aspart), Apidra (glulisine), Humalog (lispro) Insulin analogues with faster onset of action and shorter duration of action Diabetes mellitus Isophane insulin150 NPH Insulin protamine crystalline formulation with slower onset of action and longer duration of action Diabetes mellitus ‡ ‡ ‡ Insulin detemir152; Insulin glargine150 Levemir (detemir), Lantus (glargine) Insulin analogues with slower onset of action and longer duration of action Diabetes mellitus ‡ Insulin zinc extended150 Lente, Ultralente Insulin zinc hexameric complex with slower onset of action and longer duration of action Diabetes mellitus Pramlintide acetate153 Symlin Mechanism unknown; recombinant synthetic peptide analogue of human amylin (a naturally occurring neuroendocrine hormone regulating post-prandial glucose control) Diabetes mellitus, in combination with insulin Growth hormone (GH), somatotropin133–137 Genotropin, Humatrope, Norditropin, NorIVitropin, Nutropin, Omnitrope, Protropin, Siazen, Serostim, Valtropin Anabolic and anticatabolic effector Growth failure due to GH deficiency or chronic renal insufficiency, Prader-Willi syndrome, Turner syndrome, AIDS wasting or cachexia with antiviral therapy ‡ Mecasermin154 Increlex Recombinant insulin-like growth factor 1 (IGF1) induces mitogenesis, chondrocyte growth and organ growth, which combine to restore appropriate statural growth Growth failure in children with GH gene deletion or severe primary IGF1 deficiency Mecasermin rinfabate155 IPlex Similar to mecasermin; IGF1 bound to IGF binding protein 3 (IGFBP3) is thought to keep the hormone inactive until it reaches its target tissues, thereby decreasing hypoglycaemia-like side effects Growth failure in children with GH gene deletion or severe primary IGF1 deficiency ‡ ‡ Haemostasis and thrombosis Factor VIII27,28,118 Bioclate, Helixate, Kogenate, Recombinate, ReFacto Coagulation factor Haemophilia A Factor IX29,30,141,142 Benefix Coagulation factor Haemophilia B § Antithrombin III (AT-III)143,144 Thrombate III Purified human AT-III from pooled plasma inactivates thrombin by forming a covalent bond between the catalytic serine residue of thrombin and an arginine reactive site on AT-III; AT-III replacement therapy prevents inappropriate blood-clot formation Hereditary AT-III deficiency in connection with surgical or obstetrical procedures or for thromboembolism Protein C concentrate145 Ceprotin After activation by the thrombin–thrombomodulin complex, protein C inhibits coagulation factors Va and VIIIa Treatment and prevention of venous thrombosis and purpura fulminans in patients with severe hereditary protein C deficiency § *Continued in TABLE 2. Protein therapeutics derive their specificity and function from their structure. Molecules ranging from large and complex enzymes to short peptide sequences have specific biological activity due to their amino-acid-based secondary and tertiary structure. For example, somatostatin is active as either a 14 or 28 amino-acid peptide, and its even shorter synthetic analogues share a characteristic hairpin-loop structure that defines their specificity and biological activity. Some very short peptide therapeutics are better thought of as small-molecule drugs, as they lack secondary and tertiary structures that define their biological activity. For this reason, therapeutics such as glatiramer acetate (a four amino-acid peptide consisting of acetate with l‑Glu, l‑Ala, l‑Tyr and l‑Lys) are not addressed in this article. Protein therapeutics are recombinant unless otherwise stated. ‡Also classed in Group Ib. §Non-recombinant. of protein therapeutics in each category and clinical conditions in which they are used are discussed in the text, and a listing of FDA-approved protein therapies and their functions and clinical uses is presented in TABLES 1–8. Examples of protein-based vaccines and diagnostics that highlight the growing importance of proteins in medicine are provided in TABLES 9,10. Group I: enzymes and regulatory proteins Protein therapeutics in this group function by a classic paradigm in which a specific endogenous protein is deficient, and the deficit is then remedied by treatment with exogenous protein. Protein therapeutics that we have classified in Group Ia are used to replace a particular activity in cases of protein deficiency or abnormal protein nature reviews | drug discovery production. These proteins are used in a range of conditions, from providing lactase in patients lacking this gastrointestinal enzyme26 to replacing vital blood-clotting factors such as factor VIII27,28 and factor IX29,30 in haemophiliacs. A classic example, as mentioned above, is the use of insulin for the treatment of diabetes. Another important example is in the treatment of volume 7 | january 2008 | 23 © 2008 Nature Publishing Group Perspectives cystic fibrosis, a common lethal genetic disorder. In this disease, defects in the chloride channel encoded by the CFTR gene lead to abnormally thick secretions, which can (among other effects) block pancreatic enzymes from travelling down the pancreatic duct into the duodenum31. This prevents food from being properly digested and results in malnutrition. Patients with cystic fibrosis are often treated with a combination of pancreatic enzymes isolated from pigs — including lipases, amylases and proteases — that allow the digestion of lipids, sugars and proteins. Patients who have had their pancreas removed or who suffer from chronic pancreatitis can also benefit from this therapy5,6. Other striking examples include various diseases caused by metabolic enzyme deficiencies, such as Gaucher’s disease as mentioned above, mucopolysaccharidosis, Fabry disease and others. Additional protein therapies that replace a particular activity are listed in TABLES 1,2. It may sometimes be desirable to enhance the magnitude or timing of a particular normal protein activity, and protein therapeutics that we have classified in Group Ib are administered to achieve this. Such protein therapeutics have been successful in treating haematopoietic defects; the most prominent example is recombinant erythropoietin, a protein hormone secreted by the kidney that stimulates erythrocyte production in the bone marrow31. In patients with chemotherapy-induced anaemia or myelodysplastic syndrome, recombinant erythropoietin is used to increase erythrocyte production and thereby ameliorate the anaemia. In patients with renal failure, whose levels of endogenous erythropoietin are below normal, recombinant protein is administered to correct this deficiency32–36. Another example is provided by the treatment of neutropaenic patients with granulocyte- or granulocytemonocyte colony stimulating factor (G-CSF or GM‑CSF, respectively)36,37, which stimulate an increase in the number of neutrophils produced by the bone marrow to allow these patients to better combat microbial infections. Similarly, thrombocytopaenic patients can be treated with interleukin 11 (IL11)38, which increases platelet production and thereby prevents bleeding complications. In vitro fertilization (IVF) is another area in which Group Ib proteins are applied. Increased levels of follicle-stimulating hormone (FSH) are normally produced by the anterior pituitary gland just before ovulation. These high levels of FSH can be enhanced by treatment with recombinant FSH, leading to maturation of an increased number of follicles and to an increased number of oocytes available for IVF39,40. Similarly, recombinant human chorionic gonadotropin (HCG)41 is used in assisted reproductive technology to promote follicle rupture, a process that must occur before the oocytes can be transported into the fallopian tubes for fertilization. Group Ib proteins can also have life-saving effects on thrombosis and haemostasis. Alteplase (recombinant tissue plasminogen activator (tPA; also known as PLAT)), is used to treat life-threatening blood clots in conditions such as coronary artery occlusion, acute ischaemic stroke and pulmonary embolism42–46. Endogenous tPA is secreted by the endothelial cells that line blood vessels. The secreted tPA normally cleaves plasminogen to plasmin, which then degrades fibrin and thereby lyses fibrin-based clots15. Although endogenous tPA may be present at normal or even increased levels near the site of a blood clot, administration of relatively large amounts of exogenous tPA may be required to disrupt these clots. Reteplase, a genetically modified form of recombinant tPA, is used to treat acute myocardial infarction47,48, and enecteplase, another genetically engineered derivative of tPA, has greater specificity than tPA for binding to plasminogen and therefore causes a more efficacious lysis of fibrin in blood clots49,50. Supraphysiological levels of coagulation factor VIIa may catalyse thrombosis and thereby stop life-threatening bleeding in patients with haemophilia A or B51,52. Also, recent studies have suggested that recombinant activated protein C53,54 can improve immunoregulation and prevent excessive clotting reactions in patients with severe, life-threatening sepsis and organ dysfunction. Many other Group Ib protein therapeutics are also used for immunoregulation — chronic hepatitis B and C, Kaposi’s sarcoma, melanoma, and some types of leukaemia and lymphoma have been treated with various forms of interferon, as noted in TABLE 3. Other disease states treated with Group Ib proteins are summarized in TABLES 3,4. Occasionally, the activity of a particular protein is desirable even though the body does not normally express that activity. Protein therapeutics that we have classified in Group Ic contain examples of this paradigm, including foreign proteins with novel functions and endogenous proteins that act at a novel time or place in the body. Papain, for example, is a protease purified from the Carica papaya fruit. This protein is used thera peutically to degrade proteinaceous debris in wounds55. Collagenase, obtained from fermentation by Clostridium histolyticum, 24 | january 2008 | volume 7 can be used to digest collagen in the necrotic base of wounds56,57. The protease-mediated debridement or removal of necrotic tissue is useful in the treatment of burns, pressure ulcers, post-operative wounds, carbuncles and other types of wounds. Recombinant human deoxyribonuclease I (DNASE1) also has an interesting novel use. Normally found inside human cells, this recombinant enzyme can be used to degrade the DNA left over from dying neutrophils in the respiratory tract of patients with cystic fibrosis58. Such DNA could otherwise form mucus plugs that obstruct the respiratory tract and lead to pulmonary fibrosis, bronchiectasis and recurrent pneumonias. Thus, recombinant protein technology has allowed the therapeutic application of a normally intracellular enzyme in a novel extracellular environment. There are many other successful examples of this approach to protein therapy. For instance, certain forms of acute lymphoblastic leukaemia are unable to synthesize asparagine and therefore require the availability of this amino acid to survive. l‑Asparaginase, purified from E. coli, can be used to lower serum levels of asparagine in such patients and thereby inhibit cancer cell growth59,60. Studies of the medical leech, Hirudo medicinalis, revealed that its salivary gland produces hirudin, a potent thrombin inhibitor. The gene for this protein was then identified, cloned and used recombinantly to provide a new protein therapy, lepirudin, which prevents clot formation in patients with heparin-induced thrombocytopaenia61,62. Other organisms can also be used to produce proteins that are capable of breaking up clots that have already formed; for example, streptokinase is a plasminogen activating protein produced by group C β-haemolytic streptococci63–66. Many more therapeutic proteins that provide a novel function or activity are presented in TABLE 5. Group II: targeted proteins The exquisite binding specificity of monoclonal antibodies and immunoadhesins67 can be exploited in numerous ways using recombinant DNA technology. Many protein therapeutics that we have classified in Group IIa use the antigen recognition sites of immunoglobulin (Ig) molecules or the receptor-binding domains of native protein ligands to guide the immune system to destroy specifically targeted molecules or cells. Other monoclonal antibodies and immunoadhesins neutralize molecules by simple physical occupation of a functionally important region of the molecule. Immunoadhesins combine the receptor-binding domains of protein ligands with the Fc region of an Ig. www.nature.com/reviews/drugdisc © 2008 Nature Publishing Group Perspectives Table 2 | Protein therapeutics replacing a protein that is deficient or abnormal (Group Ia)* Therapeutic Trade name Function Examples of clinical use Metabolic enzyme deficiencies β-Glucocerebrosidase21,22,24 Cerezyme Hydrolyzes glucocerebroside to glucose and ceramide Gaucher’s disease ‡ β-Glucocerebrosidase23,25,156 Ceredase (purified from pooled human placenta) Hydrolyzes glucocerebroside to glucose and ceramide Gaucher’s disease Alglucosidase-α157 Myozyme Degrades glycogen by catalyzing the hydrolysis of α-1,4 and α-1,6 glycosidic linkages of lysosomal glycogen Pompe disease (glycogen storage disease type II) Laronidase158–160 (α-l-iduronidase) Aldurazyme Digests endogenous glycosaminoglycans (GAGs) within lysosomes, and thereby prevents an accumulation of GAGs that can cause cellular, tissue, and organ dysfunction Hurler and Hurler-Scheie forms of mucopolysaccharidosis I Idursulphase161 (Iduronate-2sulphatase) Elaprase Cleaves the terminal 2-O-sulphate moieties from the GAGs dermatan sulphate and heparan sulphate, thereby allowing their digestion and preventing GAG accumulation Mucopolysaccharidosis II (Hunter syndrome) Galsulphase162 Naglazyme Cleaves the terminal sulphate from the GAG dermatan sulphate, thereby allowing its digestion and preventing GAG accumulation Mucopolysaccharidosis VI Agalsidase-β163,164 (human α-galactosidase A) Fabrazyme Enzyme that hydrolyzes globotriaosylceramide (GL3) and other glycosphingolipids, reducing deposition of these lipids in capillary endothelium of the kidney and certain other cell types Fabry disease; prevents accumulation of lipids that could lead to renal and cardiovascular complications Pulmonary and gastrointestinal-tract disorders α-1-Proteinase inhibitor8,165 Aralast, Prolastin Inhibits elastase-mediated destruction of pulmonary tissue; purified from pooled human plasma Congenital α-1-antitrypsin deficiency Lactase26 Lactaid Digests lactose; purified from fungus Aspergillus oryzae Gas, bloating, cramps and diarrhoea due to inability to digest lactose Digests food (protein, fat and carbohydrate); purified from hogs and pigs Cystic fibrosis, chronic pancreatitis, pancreatic insufficiency, post-Billroth II gastric bypass surgery, pancreatic duct obstruction, steatorrhoea, poor digestion, gas, bloating ‡ ‡ Pancreatic enzymes Arco-Lase, Cotazym, (lipase, amylase, Creon, Donnazyme, protease)5,6 Pancrease, Viokase, Zymase ‡ Immunodeficiencies ‡ Adenosine deaminase166 (pegademase bovine, PEG-ADA) Adagen Metabolizes adenosine, prevents accumulation of adenosine; purified from cows Severe combined immunodeficiency disease due to adenosine deaminase deficiency Pooled immunoglobulins167 Octagam Intravenous immunoglobulin preparation Primary immunodeficiencies Albumarc, Albumin, Albuminar, AlbuRx, Albutein, Flexbumin, Buminate, Plasbumin Increases circulating plasma osmolarity, thereby restoring and maintaining circulating blood volume Decreased production of albumin (hypoproteinaemia), increased loss of albumin (nephrotic syndrome), hypovolaemia, hyperbilirubinaemia ‡ Other Human albumin168 ‡ *Continued from TABLE 1. Protein therapeutics are recombinant unless otherwise stated. ‡Non-recombinant. The Fc region can target a soluble molecule for destruction because cells of the immune system can recognize the Fc region, endo cytose the attached molecule and break down the molecule chemically and enzymatically. When bound to specifically recognized molecules on the surface of a cell, the Fc region can target the cell for destruction by the immune system. Cell killing can be mediated by macrophages, by other immune cells or by complement fixation. Several Group IIa protein therapeutics have been approved for the treatment of inflammatory diseases, such as the immuno adhesin etanercept, which is a fusion between two human proteins: tumour necrosis factor (TNF) receptor and the Fc region of the human antibody protein IgG1. The TNF receptor portion of the molecule binds excess TNF in the plasma, while the Fc portion of the molecule targets the TNF for destruction. By combining these two functions, the drug nature reviews | drug discovery neutralizes the deleterious effects of TNF (a cytokine that stimulates increased activity of the immune system) and thereby provides an effective therapy for inflammatory arthritis and psoriasis68–70. Another Group IIa protein that targets TNF is infliximab. This recombinantly produced monoclonal antibody binds to TNFα, and is used to neutralize the action of TNFα in inflammatory conditions such as rheumatoid arthritis and inflammatory bowel disease71–73. volume 7 | january 2008 | 25 © 2008 Nature Publishing Group Perspectives Table 3 | Protein therapeutics augmenting an existing pathway (Group Ib)* Therapeutic Trade name Function Examples of clinical use Erythropoietin, Epoetin-α32–36,169,170 Epogen, Procrit Stimulates erythropoiesis Anaemia of chronic disease, myleodysplasia, anaemia due to renal failure or chemotherapy, preoperative preparation Darbepoetin-α14 Aranesp Modified erythropoietin with longer half-life; stimulates red blood cell production in the bone marrow Treatment of anaemia in patients with chronic renal insufficiency and chronic renal failure (+/- dialysis) Filgrastim36, 37 (granulocyte colony stimulating factor; G-CSF) Neupogen Stimulates neutrophil proliferation, differentiation and migration Neutropaenia in AIDS or post-chemotherapy or bone-marrow transplantation, severe chronic neutropaenia Pegfilgrastim171 (Peg-G-CSF) Neulasta Stimulates neutrophil proliferation, differentiation and migration Neutropaenia in AIDS or post-chemotherapy or bone marrow transplantation, severe chronic neutropaenia Sargramostim36, 37 (granulocytemacrophage colony stimulating factor; GM-CSF) Leukine Stimulates proliferation and differentiation of neutrophils, eosinophils and monocytes Leukopaenia, myeloid reconstitution post-bone-marrow transplantation, HIV/AIDS Oprelvekin38 (interleukin11; IL11) Neumega Stimulates megakaryocytopoiesis and thrombopoiesis Prevention of severe thrombocytopaenia, especially after myelosuppressive chemotherapy Human follicle-stimulating hormone (FSH)39,40 Gonal-F, Follistim Augments ovulation Assisted reproduction Human chorionic gonadotropin (HCG)41 Ovidrel Stimulates ovarian follicle rupture and ovulation Assisted reproduction Lutropin-α172 Luveris Recombinant human luteinizing hormone; increases estradiol secretion, thereby supporting follicle-stimulating hormone-induced follicular development Infertility with luteinizing hormone deficiency Type I alpha-interferon, interferon alfacon 1, consensus interferon173–178 Infergen Mechanism unknown; immunoregulator Chronic hepatitis C infection Interferon-α2a (IFNα2a)179–183 Roferon-A Mechanism unknown; immunoregulator Hairy cell leukaemia, chronic myelogenous leukaemia, Kaposi’s sarcoma, chronic hepatitis C infection PegInterferon-α2a184–186 Pegasys Recombinant interferon-α2a conjugated to polyethylene glycol (PEG) to increase half-life Adults with chronic hepatitis C who have compensated liver disease and who have not been previously treated with IFNα; used alone or in combination with ribavirin Interferon-α2b (IFNα2b)187–189 Intron A Mechanism unknown; immunoregulator Hepatitis B, melanoma, Kaposi’s sarcoma, follicular lymphoma, hairy-cell leukaemia, condylomata acuminata, hepatitis C PegInterferon-α2b190 Peg-Intron Recombinant interferon-α2b conjugated to polyethylene glycol (PEG) to increase half-life Adults with chronic hepatitis C who have compensated liver disease and who have not been treated previously with IFNα ‡ Interferon-αn3 (IFNαn3)191,192 Alferon N Mechanism unknown; nonrecombinant human IFNα-n3 purified from pooled human leukocytes Condylomata acuminata (genital warts caused by human papillomavirus) Interferon-β1a (rIFN-β)178,193–196 Avonex, Rebif Mechanism unknown; antiviral and immunoregulator Multiple sclerosis Interferon-β1b (rIFN-β)197–199 Betaseron Mechanism unknown; antiviral and immunoregulator Multiple sclerosis Interferon-γ1b (IFNγ)200–204 Actimmune Increases inflammatory and antimicrobial response Chronic granulomatous disease, severe osteopetrosis Aldesleukin205–208 (interleukin 2 (IL2), epidermal thymocyte activating factor; ETAF) Proleukin Stimulates T and B cells, natural killer cells, and lymphokine-activated killer cells Metastatic renal cell cancer, melanoma Haematopoiesis Fertility Immunoregulation *Continued in TABLE 4. Protein therapeutics are recombinant unless otherwise stated. ‡Non-recombinant. 26 | january 2008 | volume 7 www.nature.com/reviews/drugdisc © 2008 Nature Publishing Group Perspectives Table 4 | Protein therapeutics augmenting an existing pathway (Group Ib)* Therapeutic Trade name Function Examples of clinical use Alteplase42–46 (tissue plasminogen activator; tPA) Activase Promotes fibrinolysis by binding fibrin and converting plasminogen to plasmin Pulmonary embolism, myocardial infarction, acute ischaemic stroke, occlusion of central venous access devices Reteplase (deletion mutein of tPA)47,48 Retavase Contains the non-glycosylated kringle 2 and protease domains of human tPA; functions similarly to tPA Management of acute myocardial infarction, improvement of ventricular function Tenecteplase49,50 TNKase tPA with greater specificity for plasminogen conversion; has amino-acid substitutions of Thr103 to Asp, Asp117 to Gln, and Ala for amino-acids 296–299 Acute myocardial infarction § Urokinase209,210 Abbokinase Nonrecombinant plasminogen activator derived from human neonatal kidney cells Pulmonary embolism Factor VIIa51,52 NovoSeven Pro-thrombotic (activated factor VII; initiates the coagulation cascade) Haemorrhage in patients with haemophilia A or B and inhibitors to factor VIII or factor IX Drotrecogin-α53,54 (activated protein C) Xigris Antithrombotic (inhibits coagulation factors Va and VIIIa), anti-inflammatory Severe sepsis with a high risk of death Salmon calcitonin211,212 Fortical, || Miacalcin Mechanism unknown; inhibits osteoclast function Postmenopausal osteoporosis Teriparatide213–216 (human parathyroid hormone residues 1–34) Forteo Markedly enhances bone formation; administered as a once-daily injection Severe osteoporosis Byetta Incretin mimetic with actions similar to glucagonlike peptide 1 (GLP1); increases glucose-dependent insulin secretion, suppresses glucagon secretion, slows gastric emptying, decreases appetite (first identified in saliva of the Gila monster Heloderma suspectum) Type 2 diabetes resistant to treatment with metformin and a sulphonylurea || Octreotide218,219 Sandostatin Potent somatostatin analogue; inhibits growth hormone, glucagon and insulin Acromegaly, symptomatic relief of VIP-secreting adenoma and metastatic carcinoid tumours Dibotermin-α220,221 (recombinant human bone morphogenic protein 2; rhBMP2) Infuse Mechanism unknown Spinal fusion surgery, bone injury repair Recombinant human bone morphogenic protein 7 (rhBMP7)222 Osteogenic protein 1 Mechanism unknown Tibial fracture nonunion, lumbar spinal fusion || Histrelin acetate223,224 (gonadotropin releasing hormone; GnRH) Supprelin LA, Vantas Synthetic analogue of human GnRH; acts as a potent Precocious puberty inhibitor of gonadotropin secretion when administered continuously by causing a reversible downregulation of GnRH receptors in the pituitary and desensitizing the pituitary gonadotropes Palifermin225 (keratinocyte growth factor; KGF) Kepivance Recombinant analogue of KGF; stimulates keratinocyte growth in skin, mouth, stomach and colon Severe oral mucositis in patients undergoing chemotherapy Becaplermin226–228 (platelet-derived growth factor; PDGF) Regranex Promotes wound healing by enhancing granulation tissue formation and fibroblast proliferation and differentiation Debridement adjunct for diabetic ulcers § Trypsin229 Granulex Proteolysis Decubitus ulcer, varicose ulcer, debridement of eschar, dehiscent wound, sunburn Nesiritide230, 231 Natrecor Recombinant B-type natriuretic peptide Acute decompensated congestive heart failure Haemostasis and thrombosis ‡ Endocrine disorders Exenatide217 ‡|| Growth regulation Other *Continued from TABLE 3. Protein therapeutics are recombinant unless otherwise stated. ‡Also classed in Group Ic. §Non-recombinant. ||Synthetic. nature reviews | drug discovery volume 7 | january 2008 | 27 © 2008 Nature Publishing Group Perspectives Some Group IIa proteins are used to treat infectious diseases. Patients at high-risk for severe respiratory syncytial virus (RSV) infection, one of the leading causes of hospital admissions for paediatric respiratory illness, are given a recombinant monoclonal antibody, palivizumab, which binds to the RSV F protein and thereby directs the immune-mediated clearance of the virus from the body74,75. Enfuvirtide is an example of a Group II protein therapeutic that is not a monoclonal antibody or an immunoadhesin. By binding to gp120/gp41 — the HIV envelope protein responsible for fusion of the virus with host cells — this 36-amino-acid peptide prevents the conformational change in gp41 that is required for viral fusion, and thereby inhibits viral entry into the cell76–78. Table 5 | Protein therapeutics providing a novel function or activity (Group Ic) Therapeutic Trade name Function Examples of clinical use Enzymatic degradation of macromolecules *Botulinum toxin type A232,233 Botox Cleaves SNAP25 at neuromuscular junctions to disrupt SNARE complex and prevent acetylcholine release, causing flaccid paralysis Many types of dystonia, particularly cervical; cosmetic uses *Botulinum toxin type B233,234 Myoblock Cleaves synaptobrevin at neuromuscular junctions to disrupt SNARE complex and prevent acetylcholine release, causing flaccid paralysis Many types of dystonia, particularly cervical; cosmetic uses *Collagenase56,57 Collagenase, Santyl Collagenase obtained from fermentation by Clostridium histolyticum; digests collagen in necrotic base of wounds Debridement of chronic dermal ulcers and severely burned areas Human deoxyribonuclease I, dornase-α58 Pulmozyme Degrades DNA in purulent pulmonary secretions Cystic fibrosis; decreases respiratory tract infections in selected patients with FVC greater than 40% of predicted *Hyaluronidase (bovine, ovine)235 Amphadase Catalyses the hydrolysis of hyaluronic acid to (bovine), Hydase increase tissue permeability and allow faster drug (bovine), Vitrase absorption (ovine) Used as an adjuvant to increase the absorption and dispersion of injected drugs, particularly anaesthetics in ophthalmic surgery and certain imaging agents Hyaluronidase (recombinant human)236 Hylenex Catalyses the hydrolysis of hyaluronic acid to increase tissue permeability and allow faster drug absorption Used as an adjuvant to increase the absorption and dispersion of injected drugs, particularly anaesthetics in ophthalmic surgery and certain imaging agents *Papain55 Accuzyme, Panafil Protease from the Carica papaya fruit Debridement of necrotic tissue or liquefication of slough in acute and chronic lesions, such as pressure ulcers, varicose and diabetic ulcers, burns, postoperative wounds, pilonidal cyst wounds, carbuncles, and other wounds Enzymatic degradation of small-molecule metabolites *l-Asparaginase60 ELSPAR Provides exogenous asparaginase activity, removing available asparagine from serum; purified from Escherichia coli Acute lymphocytic leukaemia, which requires exogenous asparagine for proliferation *Peg-asparaginase59 Oncaspar Provides exogenous asparaginase activity, removing available asparagine from serum; purified from E. coli Acute lymphocytic leukaemia, which requires exogenous asparagine for proliferation Rasburicase237 Elitek Catalyzes enzymatic oxidation of uric acid into an inactive, soluble metabolite (allantoin); originally isolated from Aspergillus flavus Paediatric patients with leukaemia, lymphoma, and solid tumours who are undergoing anticancer therapy that may cause tumour lysis syndrome Haemostasis and thrombosis Lepirudin61,62 Refludan Recombinant hirudin, a thrombin inhibitor from the Heparin-induced thrombocytopaenia salivary gland of the medicinal leech Hirudo medicinalis ‡ Bivalirudin238,239 Angiomax Synthetic hirudin analogue; specifically binds both the catalytic site and the anion-binding exosite of circulating and clot-bound thrombin Reduce blood-clotting risk in coronary angioplasty and heparin-induced thrombocytopaenia *Streptokinase63–65,240 Streptase Converts plasminogen to plasmin; produced by group C b-haemolytic streptococci Acute evolving transmural myocardial infarction, pulmonary embolism, deep vein thrombosis, arterial thrombosis or embolism, occlusion of arteriovenous cannula *Anistreplase241,242 (anisoylated plasminogen streptokinase activator complex; APSAC) Eminase Converts plasminogen to plasmin; p-anisoyl group protects the catalytic centre of the plasminogenstreptokinase complex and prevents premature deactivation, thereby providing longer duration of action than streptokinase Thrombolysis in patients with unstable angina Protein therapeutics are recombinant unless otherwise stated. *Non-recombinant. ‡Synthetic. FVC, forced vital capacity; SNAP25, synaptosomal-associated protein, 25 kDa; SNARE, soluble N-ethylmaleimide-sensitive factor attachment protein receptor. 28 | january 2008 | volume 7 www.nature.com/reviews/drugdisc © 2008 Nature Publishing Group Perspectives Another area in which Group IIa antibodies have been successful is oncology. For example, rituximab is a human/mouse chimeric monoclonal antibody that binds to CD20, a transmembrane protein expressed on >90% of B‑cell non-Hodgkin’s lymphomas, and targets the cells for destruction by the body’s immune system79–81. Although rituximab is most often used in combination with anthracycline-based chemotherapy, it is one of the few monoclonal antibody anticancer therapies that is approved as a monotherapy. Cetuximab is a monoclonal antibody that is used to treat colorectal cancer and head and neck cancer; this monoclonal antibody binds epidermal growth factor receptor (EGFR) and impairs cancer cell growth and proliferation82. Other recently developed Group IIa protein therapeutics are listed in TABLES 6,7, and many more protein therapeutics utilizing the exquisite specificity of monoclonal antibodies are in development, especially for cancer and inflammatory diseases. Many important processes are modulated by cell-surface receptors that are activated upon binding of their cognate ligands15. By binding to such receptors, targeted protein therapeutics may activate cell signalling pathways and profoundly affect cell function. Outcomes may range from cell death (through the induction of apoptosis), to downregulation of cell division to increased cell proliferation. Although it has been diffi cult to prove that a particular target-binding protein mediates an in vivo effect through the modulation of a particular signalling pathway, in vitro evidence suggests that this type of modulation is involved in the mechanism of action of certain therapeutic proteins. For example, the treatment of certain breast cancers, in which the malignant cells express the HER2/Neu (also known as ERBB2) cell surface receptor, is enhanced by the addition of trastuzumab (an anti-HER2/Neu monoclonal antibody) to the therapeutic regimen83. Although trastuzumab contains an Fc region that facilitates antibody-dependent cellular cytotoxicity mediated by natural killer cells, it seems unlikely that this is trastuzumab’s only mechanism of action. Other monoclonal antibodies, with similar Fc regions and abilities to target breast cancer cells, have failed to show efficacy in vivo. Trastuzumab, however, has been shown in vitro to induce intracellu lar signalling events that control the growth of breast cancer cells. It is therefore likely that a combination of mechanisms accounts for the therapeutic activity of trastuzumab, including inhibition of the phosphatidyl inositol 3-kinase (PI3K) pathway, inhibition of angiogenesis and inhibition of HER2 receptor cleavage84,85. The complex action of trastuzumab highlights the fact that, while modulation of cell physiology through simple receptor binding may play a role in the activity of some targeted therapies, the relative contribution of receptor binding to the overall efficacy of the therapeutic may be difficult to dissect. One of the great challenges in drug therapy is the selective delivery of small-molecule drugs and proteins to the intended therapeutic target. The body normally uses proteins to achieve specialized transport and delivery of molecules. An active area of current research is focused on understanding the principles of protein-based, targeted delivery of molecules, so that these principles can be applied to modern pharmacotherapy. This strategy is exploited by protein therapeutics that we have classified in Group IIb (TABLE 8), such as gemtuzumab ozogamicin, which links the binding region of a monoclonal antibody directed against CD33 with calicheamicin, a small-molecule chemotherapeutic agent. By using this therapy, the toxic compound is selectively delivered to CD33-positive acute myeloid leukaemia cells, resulting in the selective killing of these cells86,87. Similarly, refractory CD20-positive non-Hodgkin’s lymphoma cells can be destroyed selectively by ibritumomab tiuxetan, a monoclonal antibody that is directed against CD20 and linked to a radioactive yttrium isotope (Y‑90)88. Another example is provided by denileukin diftitox, which uses a monoclonal antibody that is directed against the CD25 component of the IL2 receptor to deliver cytocidal diphtheria toxin to T-cell lymphoma cells that express this receptor89,90. In addition to these current examples, interesting developments are in progress that illustrate where the field might be heading. For example, herpes simplex virus produces a protein, VP22, which enters human cells. VP22 has been used in vitro to deliver proteins or other compounds to the nucleus. In one application, VP22 was used to target the tumour suppressor protein p53 to cultured osteosarcoma cells that lacked the p53 gene (and hence the protein)91. Reintroduction of p53 led to apoptosis of the cells. It is thought that a novel and effective therapy for certain forms of cancer could use protein-based targeting of the p53 gene. Another area of research involves the delivery of proteins and other macromolecules to the CNS, which is challenging owing to the highly selective blood–brain barrier (BBB). Animal experiments have demonstrated, however, that fusion proteins combining a therapeutic protein with a protein that naturally has nature reviews | drug discovery specific access through the BBB can allow successful delivery of the therapeutic protein to the CNS. For example, a fragment of the tetanus toxin protein that naturally crosses the BBB has been shown in animal experiments to deliver the enzyme superoxide dismutase (SOD) to the CNS92. This type of therapeutic could potentially be used to treat neurological disorders such as amyotrophic lateral sclerosis, in which CNS levels of SOD are reported to be low. Exciting prospects also exist for the treatment of other disorders of the CNS in which levels of a particular protein are abnormal. Group III: protein vaccines As recombinant DNA technology was being developed, great strides were also being made in understanding the molecular mechanisms that allow the immune system to protect the body against infectious diseases and cancer. Armed with this new understanding, proteins that we have classified in Group III have been successfully applied as prophylactic or therapeutic vaccines. TABLE 9 provides selected examples. For humans to develop effective immunity against foreign organisms or cancer cells, immune cells such as helper T cells must be activated. Immune-cell activation is mediated by antigen-presenting cells, which display on their surface specific oligopeptides that are derived from proteins found in foreign organisms or cancer cells. Vaccination against certain organisms such as polio or measles has most often been achieved by injecting heat-killed or attenuated forms of these pathogens. Unfortunately, these methods have involved a certain amount of unavoidable risk of infection or adverse reaction. By specifically injecting the appropriate immunogenic (but non-pathogenic) protein components of a microorganism, vaccines can hopefully be created that provide immunity in an individual without exposing the individual to the risks of infection or toxic reaction. Proteins that we have classified in Group IIIa are used to generate protection against infectious diseases or toxins. One successful example is the hepatitis B vaccine93,94. This vaccine was created by producing recombinant hepatitis B surface antigen (HBsAg) protein, a non-infectious protein of the hepatitis B virus. When immunocompetent humans are challenged and rechallenged with this protein, significant immunity results in the large majority of individuals. Similarly, the non-infectious lipoprotein on the outer surface of Borrelia burgdorferi has been engineered into a vaccine for Lyme disease (OspA)95,96. A recently approved volume 7 | january 2008 | 29 © 2008 Nature Publishing Group Perspectives vaccine against human papillomavirus (HPV) combines the major capsid proteins from four HPV strains that commonly cause genital warts (strains 6 and 11) and cervical cancer (strains 16 and 18)97. In addition to generating protection against foreign invaders, recombinant proteins can induce protection against an overactive immune system that attacks its own body or ‘self ’. One theory is that administration of large amounts of this selfprotein causes the body’s immune system to develop tolerance to that protein by eliminating or deactivating cells that react against the self-protein. Proteins that we have Table 6 | Protein therapeutics that interfere with a molecule or organism (Group IIa)* Therapeutic Trade name Function Examples of clinical use Bevacizumab243–246 Avastin Humanized mAb that binds all isoforms of VEGFA Colorectal cancer, non-small-cell lung cancer Cetuximab140 Erbitux Humanized mAb that binds EGFR Colorectal cancer, head and neck cancer Panitumumab Vectibix Human mAb that binds EGFR Metastatic colorectal cancer Alemtuzumab248 Campath Humanized mAb directed against CD52 antigen on T and B cells B-cell chronic lymphocytic leukaemia in patients who have been treated with alkylating agents and who have failed fludabarine therapy Rituximab79–81, 249–251 Rituxan Chimeric (human/mouse) mAb that binds CD20, a transmembrane protein found on over 90% of B-cell non-Hodgkin’s lymphomas (NHL); synergistic effect with some small-molecule chemotherapeutic agents has been demonstrated in lymphoma cell lines Relapsed or refractory low-grade or follicular CD20+ B-cell NHL, primary low-grade or follicular CD20+ B-cell NHL in combination with CVP chemotherapy; diffuse large B-cell CD20+ NHL in combination with CHOP or other anthracylinebased chemotherapy; rheumatoid arthritis in combination with methotrexate Trastuzumab84 Herceptin Humanized mAb that binds HER2/Neu cell surface receptor and controls cancer cell growth Breast cancer Abatacept252 Orencia Fusion protein between extracellular domain of human CTLA4 and the modified Fc portion of human immunoglobulin G1; selective co-stimulation modulator; inhibits T-cell activation by binding to CD80 and CD86, thereby blocking interaction with CD28 and inhibiting autoimmune T-cell activation Rheumatoid arthritis (especially when refractory to TNFa inhibition) Anakinra253–255 Antril, Kineret Recombinant interleukin 1 (IL1) receptor antagonist Moderate to severe active rheumatoid arthritis in adults who have failed one or more diseasemodifying antirheumatic drug Adalimumab256,257 Humira Human mAb that binds specifically to TNFα and blocks its interaction with p55 and p75 cell surface TNF receptors, resulting in decreased levels of inflammation markers including CRP, ESR, and IL6 Rheumatoid arthritis, Crohn’s disease, ankylosing spondylitis, psoriatic arthritis Etanercept68–70 Enbrel Dimeric fusion protein between recombinant soluble TNF receptor and Fc portion of human immunoglobulin G1 Rheumatoid arthritis, polyarticular-course juvenile rheumatoid arthritis, psoriatic arthritis, ankylosing spondylitis, plaque psoriasis Infliximab71–73 Remicade Chimeric mAb that binds and neutralizes TNFα, preventing Rheumatoid arthritis, Crohn’s disease, ankylosing spondylitis, psoriatic arthritis, plaque psoriasis induction of pro-inflammatory cytokines, changes in endothelial permeability, activation of eosinophils and neutrophils, induction of acute phase reactants, and enzyme elaboration by synoviocytes and/or chondrocytes Alefacept258,259 Amevive Dimeric fusion protein that binds CD2 on the surface Adults with moderate to severe chronic plaque of lymphocytes and inhibits interaction with LFA3; this psoriasis who are candidates for systemic therapy association is important for the activation of T lymphocytes or phototherapy in psoriasis Efalizumab260,261 Raptiva Humanized mAb directed against CD11a Adults with chronic moderate to severe plaque psoriasis who are candidates for systemic therapy or phototherapy Natalizumab262 Tysabri Mechanism unknown; humanized mAb that binds to the α4-subunit of α4β1 and α4β7 integrins, blocking their interactions with VCAM1 and MadCAM1, respectively Relapsing multiple sclerosis Eculizumab263,264 Soliris Humanized mAb that binds complement protein C5 and inhibits its cleavage to C5a and C5b, preventing the formation of the terminal complement complex C5b–9 Paroxysmal nocturnal haemoglobinuria Cancer 247 Immunoregulation *Continued in TABLE 7. Protein therapeutics are all recombinant. CHOP, cyclophosphamide, hydroxydaunorubicin, oncovin (vincristine), prednisone/prednisolone; CTLA4, cytotoxicT-lymphocyte-associated antigen 4; CVP, cyclophosphamide, vincristine, prednisone; EGFR, epidermal growth factor receptor; LFA3, leukocyte functionassociated antigen 3; mAb, monoclonal antibody; MadCAM1, mucosal addressin cell adhesion molecule 1; TNF, tumour necrosis factor; VCAM1, vascular cell adhesion molecule-1; VEGFA, vascular endothelial growth factor A. 30 | january 2008 | volume 7 www.nature.com/reviews/drugdisc © 2008 Nature Publishing Group Perspectives classified in Group IIIb are used to treat patients with disorders that arise from this type of autoimmune phenomenon. Immunological acceptance of a fetus during pregnancy represents a special situation with respect to vaccine use. Occasionally, a pregnant woman can reject a fetus after she has been immunized against certain antigens carried by a fetus from a previous pregnancy. Administration of an anti-Rhesus D antigen Ig prevents the sensitization of an Rh-negative mother at the time of delivery of an Rh-positive neonate. Because the woman fails to develop antibodies directed against the fetal Rh antigens, immune reactions Table 7 | Protein therapeutics that interfere with a molecule or organism (Group IIa)* Therapeutic Trade name Function Examples of clinical use Transplantation ‡ Antithymocyte globulin (rabbit)265–267 Thymoglobulin Selective depletion of T cells; exact mechanism unknown Acute kidney transplant rejection, aplastic anaemia Basiliximab268 Simulect Chimeric (human/mouse) IgG1 that blocks cellular immune response in graft rejection by binding the alpha chain of CD25 (IL2 receptor) and thereby inhibiting the IL2-mediated activation of lymphocytes Prophylaxis against allograft rejection in renal transplant patients receiving an immunosuppressive regimen including cyclosporine and corticosteroids Daclizumab269 Zenapax Humanized IgG1 mAb that blocks cellular immune response in graft rejection by binding the alpha chain of CD25 (IL2 receptor) and thereby inhibiting the IL2-mediated activation of lymphocytes Prophylaxis against acute allograft rejection in patients receiving renal transplants MuromonabCD3270–272 Orthoclone, OKT3 Murine mAb that binds CD3 and blocks T-cell function Acute renal allograft rejection or steroid-resistant cardiac or hepatic allograft rejection Omalizumab273–275 Xolair Humanized mAb that inhibits IgE binding to the high-affinity IgE receptor on mast cells and basophils, decreasing activation of these cells and release of inflammatory mediators Adults and adolescents (at least 12 years old) with moderate to severe persistent asthma who have a positive skin test or in vitro reactivity to a perennial aeroallergen and whose symptoms are inadequately controlled with inhaled corticosteroids Palivizumab74,75 Humanized IgG1 mAb that binds the A antigenic site of the F protein of respiratory syncytial virus Prevention of respiratory syncytial virus infection in high-risk paediatric patients 36 amino-acid peptide that inhibits HIV entry into host cells by binding to the HIV envelope protein gp120/gp41 Adults and children (at least 6 years old) with advanced HIV infection Fab fragment of chimeric (human/mouse) mAb 7E3 that inhibits platelet aggregation by binding to the glycoprotein IIb/IIIa integrin receptor Adjunct to aspirin and heparin for prevention of cardiac ischaemia in patients undergoing percutaneous coronary intervention or patients about to undergo percutaneous coronary intervention with unstable angina not responding to medical therapy Somavert Recombinant human growth hormone conjugated to PEG; blocks the growth hormone receptor Acromegaly ‡ Crotalidae polyvalent immune Fab (ovine)281,282 Crofab Mixture of Fab fragments of IgG that bind and neutralize venom toxins of ten clinically important North American Crotalidae snakes Crotalidae envenomation (Western diamondback, Eastern diamondback and Mojave rattlesnakes, and water moccasins) ‡ Digoxin immune serum Fab (ovine)283,284 Digifab Monovalent Fab immunoglobulin fragment obtained from sheep immunized with a digoxin derivative Digoxin toxicity Ranibizumab285 Lucentis Humanized mAb fragment that binds isoforms Neovascular age-related macular degeneration of vascular endothelial growth factor A (VEGFA) Pulmonary disorders Synagis Infectious diseases§ Enfuvirtide76–78 Fuzeon Haemostasis and thrombosis Abciximab276–278 ReoPro Endocrine disorders Pegvisomant279,280 Other|| *Continued from TABLE 6. Protein therapeutics are recombinant unless otherwise stated. ‡Non-recombinant. §Purified immune globulins can also be used to mitigate the acute affects of exposure to an infectious agent. Human immune globulins targeting botulism, cytomegalovirus, hepatitis B, rabies, tetanus, and vaccinia have been approved by the FDA. ||Two additional antivenins have been approved by the FDA: Antivenin immune globulin (equine) — Latrodectus mactans (black widow spider); Antivenin immune globulin (equine) — Micrurus fulvius (North American coral snake). Fab, fragment antigen-binding; IgE/G/G1, immunoglobulin E/G/G1; IL2, interleukin 2; mAb, monoclonal antibody; PEG, polyethylene glycol. nature reviews | drug discovery volume 7 | january 2008 | 31 © 2008 Nature Publishing Group Perspectives Table 8 | Protein therapeutics that deliver other compounds or proteins (Group IIb) Therapeutic Trade name Function Examples of clinical use Denileukin diftitox89,90 Ontak Directs the cytocidal action of diphtheria toxin to cells expressing the IL2 receptor Persistent or recurrent cutaneous T-cell lymphoma whose malignant cells express the CD25 component of the IL2 receptor *Ibritumomab tiuxetan88 Zevalin A mAb portion that recognizes CD20+ B cells and induces apoptosis while the chelation site allows either imaging (In111) or cellular damage by beta emission (Y-90) Relapsed or refractory low-grade, follicular, or transformed B-cell nonHodgkin’s lymphoma (NHL), including rituximab-refractory follicular NHL Gemtuzumab ozogamicin86,87 Mylotarg Humanized anti-CD33 IgG4k mAb conjugated to calicheamicin, a small-molecule chemotherapeutic agent Relapsed CD33+ acute myeloid leukaemia in patients who are more than 60 years old and are not candidates for cytotoxic chemotherapy Tositumomab is a mAb that binds CD20 surface antigen and stimulates apoptosis. Tositumomab coupled to radioactive iodine-131 binds CD20 surface antigen and delivers cytotoxic radiation CD20+ follicular NHL, with and without transformation, in patients whose disease is refractory to rituximab and has relapsed following chemotherapy; tositumomab and then131I-tositumomab are used sequentially in the treatment regimen *Tositumomab Bexxar, and 131IBexxar I-131 tositumomab286,287 Protein therapeutics are all recombinant. *Also classed in Group IIa. IL2, interleukin 2; mAb, monoclonal antibody. and pregnancy loss do not occur in subsequent pregnancies, even when the new fetus carries the Rh antigens98. Proteins that we have classified in Group IIIc could be used as therapeutic anticancer vaccines. Although there are currently no FDA-approved recombinant anticancer vaccines, there are promising clinical trials that use patient-specific cancer vaccines. For example, a vaccine for B‑cell non-Hodgkin’s lymphoma uses transgenic tobacco plants (Nicotiana benthamiana)99. Each patient with this type of lymphoma has a malignant proliferation of an antibody-producing B‑cell that displays a unique antibody on its surface. By subcloning the idiotype region of this tumour-specific antibody and expressing the region recombinantly in tobacco plants, a tumour-specific antigen is produced that can be used to vaccinate a patient. This process requires only 6–8 weeks from biopsy of the lymphoma to a ready-to-use, patient-specific vaccine. As the genomes of infectious organisms and the nature of autoimmune diseases and cancer are more fully elucidated, more recombinant proteins will undoubtedly be developed for use as vaccines. Group IV: protein diagnostics Proteins that we have classified in Group IV are not used to treat disease, but purified and recombinant proteins used for medical diagnostics (both in vivo and in vitro) are mentioned here because they are invaluable in the decision-making process that precedes the treatment and management of many diseases. TABLE 10 provides selected examples. A classic example of an in vivo diagnostic is the purified protein derivative (PPD) test, which determines whether an individual has been exposed to antigens from Mycobacterium tuberculosis. In this example, a non-infectious protein component of the organism is injected under the skin of an immunocompetent individual100–102. An active immune reaction is interpreted as evidence that the patient has been previously infected by M. tuberculosis or exposed to the antigens of this organism. Several stimulatory protein hormones are used to diagnose endocrine disorders. Growth hormone releasing hormone (GHRH) stimulates somatotroph cells of the anterior pituitary gland to secrete growth hormone. Used as a diagnostic, GHRH can help to determine whether pituitary growth hormone secretion is defective in patients with clinical signs of growth hormone deficiency103,104. Similarly, the recombinant human protein secretin is used to stimulate pancreatic secretions and gastrin release, and thereby aid in the diagnosis of pancreatic exocrine dysfunction or gastrinoma. In patients with a history of thyroid cancer, recombinant 32 | january 2008 | volume 7 thyroid stimulating hormone (TSH) is an important component of the surveillance methods used to detect residual thyroid cancer cells. Before the advent of recombinant TSH, patients with a history of thyroid cancer were required to stop taking replacement thyroid hormone in order to develop a hypothyroid state to which the anterior pituitary would respond by releasing endogenous TSH. TSH-stimulated cancer cells could then be detected by radioactive iodine uptake. Unfortunately, this method required patients to experience the adverse consequences of hypothyroidism. Use of recombinant instead of endogenous TSH not only allowed patients to remain on replacement thyroid hormone but also resulted in the improved detection of residual thyroid cancer cells105,106. Imaging agents are a broad group of protein diagnostics that can be used to help identify the presence or localization of a pathological condition. For example, apcitide is a technetium-labelled synthetic peptide that binds glycoprotein IIb/IIIa receptors on activated platelets and is used to image acute venous thrombosis107. Caromab pendetide is an indium‑111-labelled anti-PSA (prostatespecific antigen) antibody that can be used to detect prostate cancer108. Protein-based imaging agents are often used to detect otherwise hidden disease so it can be treated early when treatment is most likely to succeed. Imaging agents are currently used to detect cancer, image myocardial injury or identify sites of occult infection; these agents are presented in more detail in Table 10. There are numerous in vitro protein diagnostics and two are presented here as examples of a much larger class. Natural and recombinant HIV antigens are essential components of common screening (enzyme immunoassay) and confirmatory (western blot) tests for HIV infection. In these tests, the antigens serve as ‘bait’ for specific antibodies to HIV gag, pol and env gene products that have been elicited in the course of infection109–111. Oral versions of HIV tests have also become available. Hepatitis C infection is diagnosed by using recombinant hepatitis C antigens to detect antibodies directed against this virus in the serum of potentially infected patients112,113. Challenges for protein therapeutics There are now many examples in which proteins have been used successfully therapeutically. Nonetheless, potential protein therapies that have failed far outnumber the successes so far, in part owing to a number of challenges that are faced in the development and use of protein therapeutics. www.nature.com/reviews/drugdisc © 2008 Nature Publishing Group Perspectives First, protein solubility, route of administration, distribution and stability are all factors that can hinder the successful application of a protein therapy114,115. Proteins are large molecules with both hydrophilic and hydrophobic properties that can make entry into cells and other compartments of the body difficult, and the half-life of a therapeutic protein can be drastically affected by proteases, protein-modifying chemicals or other clearance mechanisms. One example of how such challenges are being addressed is through the production of PEGylated versions of therapeutic proteins. For example, PEG-interferon is a modified form of interferon in which the polymer polyethylene glycol (PEG) is added to prolong the absorption, decrease the renal clearance, retard the enzymatic degradation, increase the elimination half-life and reduce the immunogenicity of interferon15. A second important challenge is that the body may mount an immune response against the therapeutic protein116. In some cases, this immune response can neutralize the protein and can even cause a harmful reaction in the patient. For example, immune responses can be generated against Group Ia therapeutic proteins used to replace a factor that has been missing since birth, as illustrated by the development of antifactor VIII antibodies (inhibitors) in patients with severe haemophilia A who are treated with recombinant human factor VIII117,118. More commonly, however, immune responses are generated against proteins of non-human origin. Until quite recently, the widespread clinical application of monoclonal antibodies had been limited by the rapid induction of immune responses against this class of therapeutic proteins. The need for antibody therapeutics that evade immune surveillance and response has been a driving force in the maturation of antibody production technology. Recombinant technology and other advances have allowed the development of various antibody products that are less likely to provoke an immune response than unmodified murine antibodies. In humanized antibodies, portions of the antibody that are not critical for antigen-binding specificity are replaced with human Ig sequences that confer stability and biological activity on the protein but do not provoke an anti-antibody response; and fully human antibodies can be produced using transgenic animals or phage display technologies67,119. The field of cancer therapeutics illustrates the pace of advances in monoclonal antibody development. In the 1980s, most of the monoclonal cancer therapeutics Table 9 | Protein vaccines (Group III)* Therapeutic Trade name Function Examples of clinical use Protecting against a deleterious foreign agent (IIIa) Hepatitis B surface antigen (HBsAg)93,94 Engerix, Non-infectious protein Recombivax HB on surface of hepatitis B virus Hepatitis B vaccination HPV vaccine97 Gardasil Quadrivalent HPV recombinant vaccine (strains 6, 11, 16, 18); contains major capsid proteins from four HPV strains Prevention of HPV infection OspA95,96 LYMErix Non-infectious lipoprotein on outer surface of Borrelia burgdorferi Lyme disease vaccination Rhophylac Neutralizes Rh antigens that could otherwise elicit antiRh antibodies in an Rh-negative individual Routine antepartum and postpartum prevention of Rh(D) immunization in Rh(D)-negative women; Rh prophylaxis in case of obstetric complications or invasive procedures during pregnancy; suppression of Rh immunization in Rh(D)-negative individuals transfused with Rh(D)-positive red blood cells – – Currently in clinical trials Treating an autoimmune disease (IIIb) Anti-Rhesus (Rh) immunoglobulin G98 Treating cancer (IIIc) – *Selected vaccines highlight the use of recombinant protein technology in vaccine production. Vaccines for the following agents or diseases are currently approved by the FDA: anthrax, acellular pertussis, BCG (for childhood TB protection), diphtheria, hepatitis A and B, human papillomavirus (HPV) types 6,11,16,18, influenza types A, B, and H5N1, Japanese encephalitis, Lyme disease, measles, meningococcus, mumps, plague, pneumococcus, polio, rabies, rotavirus, rubella, smallpox, tetanus, typhoid, varicella-zoster, and yellow fever (see http://www.fda.gov/ cber/vaccine/licvacc.htm). were murine, although there were a few examples of chimeric antibodies and isolated instances of humanized and human antibodies in clinical development. During the 1990s, humanized and fully human antibodies became the most common types of antibodies introduced into clinical trials. Since 2000, there has been a further increase in the proportion of antibodies that are fully human, with the proportion of murine and chimeric antibodies being introduced into clinical trials decreasing accordingly120. More heavily engineered protein therapies that are based on human antibodies have also been developed over the past 10–15 years. One example is the ‘minibody’ AMG 531, which is currently in clinical trials for the treatment of immune thrombocytopaenic purpura. This construct consists of an Fc region of a human antibody with two copies of a peptide sequence linked to each of its IgG1 heavy chains. The peptide sequence was selected to stimulate the thrombopoietin receptor, yet the sequence has no similarity to its endogenous analogue thrombopoietin121. nature reviews | drug discovery The Fc portion extends the half-life of AMG 531 in the circulation, and the lack of sequence homology to thrombopoietin will ideally prevent the development of cross reactive anti-thrombopoietin antibodies — a serious adverse effect seen with a PEGylated version of thrombopoietin122,123. A third issue is that for a protein to be physiologically active, post-translational modifications such as glycosylation, phosphorylation and proteolytic cleavage are often required124. These requirements may dictate the use of specific cell types that are capable of expressing and modifying the protein appropriately. In addition, recombinant proteins must be synthesized in a genetically engineered cell type for largescale production. The host system must produce not only biologically active protein but also a sufficient quantity of this protein to meet clinical demand124. Also, the system must allow purification and storage of the protein in a therapeutically active form for extended periods of time. The protein’s stability, folding, and tendency to aggregate volume 7 | january 2008 | 33 © 2008 Nature Publishing Group Perspectives may be different in large-scale production and storage systems than in those used to produce the protein for animal testing and clinical trials125,126. Some have proposed engineering host systems that co-express a chaperone or foldase with the therapeutic protein of interest, but these approaches have had limited success. Potential solutions could include the development of systems in which entire cascades of genes involved in protein folding are induced together with the therapeutic protein; the impetus for this work is the observation that plasma cells, which are natural protein production facilities, use such gene cascades to produce large quantities of monoclonal antibody127. Although bacteria and yeast are generally considered easy to culture, certain mammalian cell types can be more difficult and more costly to culture128. Other methods of production — such as genetically engineered animals and plants — could provide a production advantage. Transgenic cows, goats and sheep have been Table 10 | Protein diagnostics (Group IV) Diagnostic Trade name Function Examples of clinical use DPPD Noninfectious protein from Mycobacterium tuberculosis Diagnosis of tuberculosis exposure *Glucagon288,289 GlucaGen Pancreatic hormone that increases blood glucose by stimulating the liver to convert glycogen to glucose Diagnostic aid to slow gastrointestinal motility in radiographic studies; reversal of hypoglycaemia ‡ Growth hormone releasing hormone (GHRH)103,104 Geref Recombinant fragment of GHRH that stimulates growth hormone release by somatotroph cells of the pituitary gland Diagnosis of defective growth-hormone secretion § Secretin290,291 ChiRhoStim (human peptide), SecreFlo (porcine peptide) Stimulation of pancreatic secretions and gastrin Aid in the diagnosis of pancreatic exocrine dysfunction or gastrinoma; facilitates identification of the ampulla of Vater and accessory papilla during endoscopic retrograde cholangiopancreatography Thyroid stimulating hormone (TSH), thyrotropin105,106 Thyrogen Stimulates thyroid epithelial cells or welldifferentiated thyroid cancer tissue to take up iodine and produce and secrete thyroglobulin, triiodothyronine and thyroxine Adjunctive diagnostic for serum thyroglobulin testing in the follow-up of patients with well-differentiated thyroid cancer Capromab pendetide108 ProstaScint Imaging agent; indium-111-labelled anti-PSA antibody; recognizes intracellular PSA Prostate cancer detection § Indium-111-octreotide292 OctreoScan Imaging agent; indium-111-labelled octreotide Neuroendocrine tumour and lymphoma detection Satumomab pendetide293 OncoScint Imaging agent; indium-111-labelled mAb specific for tumour-associated glycoprotein (TAG-72) Colon and ovarian cancer detection Arcitumomab294,295 CEA-scan Imaging agent; technetium-labelled antiCEA antibody Colon and breast cancer detection Nofetumomab296 Verluma Imaging agent; technetium-labelled antibody Small-cell lung cancer detection and specific for small-cell lung cancer staging § Apcitide107 Acutect Imaging agent; technetium-labelled synthetic peptide; binds GPIIb/IIIa receptors on activated platelets Imciromab pentetate297 Myoscint Imaging agent; indium-111-labelled antibody Detects presence and location of specific for human cardiac myosin myocardial injury in patients with suspected myocardial infarction Technetium fanolesomab298 NeutroSpec Imaging agent; technetium-labelled antiCD15 antibody; binds neutrophils that infiltrate sites of infection Diagnostic agent (used in patients with equivocal signs and symptoms of appendicitis) Detects human antibodies to HIV (enzyme immunoassay, western blot) Diagnosis of HIV infection In vivo infectious disease diagnostics Recombinant purified protein derivative (DPPD)100–102 Hormones Imaging agents, cancer Imaging agents, other Imaging of acute venous thrombosis Examples of in vitro diagnostics HIV antigens109–111 Enzyme immunoassay, OraQuick, Uni-Gold Hepatitis C antigens112,113 Recombinant immuno- Detects human antibodies to hepatitis C virus Diagnosis of hepatitis C exposure blot assay (RIBA) Protein diagnostics are recombinant unless otherwise stated. *Also classed in Group Ib. ‡Also classed in Group Ia. §Synthetic. CEA, carcinoembryonic antigen; mAb, monoclonal antibody; PSA, prostate-specific antigen. 34 | january 2008 | volume 7 www.nature.com/reviews/drugdisc © 2008 Nature Publishing Group Perspectives engineered to secrete protein in their milk, and transgenic chickens that lay eggs filled with recombinant protein are anticipated in the future129. Transgenic plants can inexpensively produce vast quantities of protein without waste or bioreactors130, and potatoes can be engineered to express recombinant proteins and thereby make edible vaccines9. Finally, by using fluid-shaking bioreactors, microlitre-sized culture systems might be able to predict the success of large-scale culture systems and thereby provide substantial cost savings by focusing investment on systems that are more likely to succeed131. A fourth important challenge is the costs involved in developing protein therapies. For example, switching to recombinant methodology from laborious purification of placentally derived protein has allowed the production of sufficient β-glucocerebrosidase to treat Gaucher’s disease in many patients. Even so, the cost of the recombinant protein can be greater than US$ 100,000 per patient per year132. The example of Gaucher’s disease also illustrates aspects of a fifth issue associated with protein therapeutics: ethics (although these ethical issues are not exclusive to protein therapeutics). For example, the possibility of efficacious but expensive protein therapeutics for small but severely ill patient populations, such as patients with Gaucher’s disease, can present a dilemma with respect to allocation of financial resources of health-care systems132. In addition, the definition of illness or disease could be challenged by protein therapeutics that can ‘improve upon’ conditions previously viewed as variants of normal. For example, the definition of short stature may begin to change with the possibility of using growth hormone to increase the height of a child133–137. Conclusion and future directions Medicine is approaching a new era in which approaches to manage disease are being made at the level of the genetic and protein information that underlies all biology, and protein therapeutics are playing an increasingly important role. Already, recombinant human proteins make up the majority of FDAapproved biotechnology medicines, which include monoclonal antibodies, natural interferons, vaccines, hormones, modified natural enzymes and various cell therapies. The future potential for such therapies is huge, given the thousands of proteins produced by the human body and the many thousands of proteins produced by other organisms. Furthermore, recombinant proteins not only provide alternative (or the only) treatments for particular diseases, but can also be used in combination with smallmolecule drugs to provide additive or synergistic benefit. Treatment of EGFR-positive colon cancer is illustrative of this point: combination therapy with the small-molecule drug irinotecan, which prevents DNA repair by inhibiting DNA topoisomerase, and the recombinant monoclonal antibody cetuximab, which binds to and inhibits the extracellular domain of the EGFR, results in increased survival in patients with colorectal cancer. The therapeutic synergy between irinotecan and cetuximab may be due to the fact that both drugs inhibit the same EGFR signalling pathway, with one drug (cetuximab) inhibiting the initiation of the pathway and the other drug (irinotecan) inhibiting a target downstream in the pathway82,138–140. The early success of recombinant insulin production in the 1970s created an atmosphere of enthusiasm and hope, which was unfortunately followed by an era of disappointment when the vaccine attempts, non-humanized monoclonal antibodies and cancer trials in the 1980s were largely unsuccessful. Despite these setbacks, significant progress has been made recently. As well as the major successes with protein therapeutics described in this article, new production methods are changing the scale, cost and even route of administration of recombinant protein therapeutics. With the large number of protein therapeutics both in current clinical use and in clinical trials for a range of disorders, one can confidently predict that protein therapeutics will have an expanding role in medicine for years to come. Benjamin Leader is at the Department of Emergency Medicine, Brown Medical School, 593 Eddy Street, Providence, Rhode Island 02093, USA. Quentin J. Baca and David E. 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Product Approval Information: Thrombin, Topical (Human), Updated October 23, 2007. FDA web site [online], <http:// www.fda.gov/cber/products/evithrom.htm> (2007). Acknowledgements We thank A. H. Tashjian Jr for many helpful discussions and expert review of the manuscript. D.E.G. is supported by NIH grants R37HL032854 and U54HL070819. Q.J.B. is supp orted by NIH grant T32GM07753. Portions of this article have been published in abbreviated form (Golan, D. E. et al. Principles of Pharmacology: The Pathophysiologic Basis of Drug Therapy (Lippincott Williams & Wilkins, 2004); Golan, D.E. et al. Principles of Pharmacology: The Pathophysiologic Basis of Drug Therapy, 2nd edn (Lippincott Williams & Wilkins, 2007)), and are adapted with permission. 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