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Software for genetic marker data
A comprehensive list of genetic analysis software can be found at
http://linkage.rockefeller.edu/soft/
POWERMARKER (http://statgen.ncsu.edu/powermarker/ )- A user-friendly
comprehensive set of programs for genetic marker data and population genetic data
analyses.
MEGA (http://www.megasoftware.net/) - An integrated tool for automatic and manual
sequence alignment, phylogenetic tree construction, mining web-based databases,
estimating rates of molecular evolution, and testing evolutionary hypotheses.
ARLEQUIN (http://lgb.unige.ch/arlequin/) – A suite for statistical methods for
population genetics data analysis.
PHYLIP (http://evolution.genetics.washington.edu/phylip.html) – A package of programs
for inferring phylogenies.
CONVERT
(http://www.agriculture.purdue.edu/fnr/html/faculty/Rhodes/Students%20and%20Staff/gl
aubitz/software.htm) – A program that converts the format of co-dominant, diploid
genotypic data for commonly used population genetic software packages.
TASSEL
http://www.maizegenetics.net/index.php?option=com_content&task=view&id=89&Itemi
d=119 - This application evaluates linkage disequilibrium, nucleotide diversity, and trait
associations.
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