Download Dr. Cheng

Curriculum Vitae & Brief Biography
Cheng-Wei Li (李征衞)
CURRICULUM VITAE
Current appointment: Postdoctoral Fellow (2011–)
Address:
Lab of Control and Systems Biology, National Tsing Hua
University, No. 101, Section 2, Kuang-Fu Road, Hsinchu 30013,
Taiwan
ResearchGate:
https://www.researchgate.net/profile/Cheng_Wei_Li3
Tel:
+886-3-5715131 Ext. 34057
Cell phone:
+886-933-846234
Email:
[email protected]
EDUCATION
Ph.D., Electrical Engineering, National Tsing Hua University (2010/07)
Doctoral Dissertation: Robust Sensorimotor Control of Human Arm System under Statedependent Noises, Control-dependent Noises and Additive Noises.
B.S., Automatic Control Engineering, Feng Chia University (2003/06)
HONOURS & AWARDS
Participation in the Lotfi Zadeh Best Paper Award Competition (2016)
Selected Publications (2016–)
Monograph
Chen, B. S., & Li, C. W. (2016) Big Mechanisms in Systems Biology, Big Data Mining,
Network Modeling, and Genome-Wide Data Identification. ELSEVIER. Pp. 870.
Articles in refereed journals
Li, C. W., Lo, C. C., & Chen, B. S. (2016) Estimating Sensorimotor Mapping from
Stimuli to Behaviors to Infer C. elegans movements by Neural Transmission Ability
through Connectome Databases. IEEE Transactions on Neural Networks and Learning
1
Systems, 27(11), 2229-41. (Top one journal (IF: 4.854) in COMPUTER SCIENCE,
HARDWARE & ARCHITECTURE - SCIE)
Li, C. W., Wang, W. H., & Chen, B. S. (2016) Investigating the specific core geneticand-epigenetic networks of cellular mechanisms involved in human aging in peripheral
blood mononuclear cells. Oncotarget, 7(8):8556-79. (Q1 journal (IF: 5.008) in
ONCOLOGY - SCIE)
Chen, B. S., & Li, C. W. (2016) Constructing an integrated genetic and epigenetic
cellular network for whole cellular mechanism using high-throughput next-generation
sequencing data. BMC Systems Biology, 10:18. (Q1 journal (IF: 2.435) in
MATHEMATICAL & COMPUTATIONAL BIOLOGY - SCIE)
Li, C. W., Lee, Y. L., & Chen, B. S. (2016) Investigating the Genome-wide Genetic-andepigenetic Interspecies Networks for Cross-talk Mechanisms and Multi-molecule Drug
Design in Human Macrophages and Dendritic Cells Both Infected with Mycobacterium
tuberculosis. Frontiers in Cellular and Infection Microbiology, 6:124. (Q1 journal (IF:
5.218) in MICROBIOLOGY - SCIE) (selected in New perspectives in evolution: The
superorganisms, symbiopoiesis and integration of systems. by editor-in-chief Emiliano
Salvucci)
Li, C. W., Chang, P. Y., & Chen, B. S. (2016) Investigating the Mechanism of
Hepatocellular Carcinoma Progression by Constructing Genetic and Epigenetic Networks
Using NGS Data Identification and Big Database Mining Method. Oncotarget,
7(48):79453-79473. (Q1 journal (IF: 5.008) in ONCOLOGY - SCIE)
Publications
Monograph
[1]. Chen, B. S., & Li, C. W. (2016) Big Mechanisms in Systems Biology, Big Data
Mining, Network Modeling, and Genome-Wide Data Identification. ELSEVIER. Pp. 870.
Chapters in books
[2]. Chen, B. S., Li, C. W., & Tu, C. T. (2010) Stochastic game theory approach to robust
synthetic gene network design. In Qiming Huang (Eds.), Game Theory. SCIYO. Pp. 155177.
Articles in refereed journals
2
[3]. Chang, W. C., Li, C. W., & Chen, B. S. (2005) Quantitative inference of dynamic
pathways via microarray data. BMC Bioinformatics, 6:44, 1-19. (Q1 journal (IF: 2.435)
in MATHEMATICAL & COMPUTATIONAL BIOLOGY - SCIE)
[4]. Li, C. W., Chu, Y. H., & Chen, B. S. (2006) Construction and clarification of dynamic
gene regulatory network of cancer cell cycle via microarray data. Cancer Informatics,
2, 223-241.
[5]. Chen, B. S., & Li, C. W. (2007) Analyzing microarray data in drug discovery using
systems biology. Expert Opinion on Drug Discovery, 2(5), 755-768. (Q1 journal (IF:
3.484) in PHARMACOLOGY & PHARMACY - SCIE)
[6]. Li, C.W., Chang, W.C. & Chen, B.S. (2009) System identification and robustness
analysis of the circadian regulatory network via ARX stochastic interactive model.
International Journal of Computational Intelligence in Control, 1(1), 37-55.
[7]. Li, C. W., & Chen, B. S. (2009) Stochastic spatio-temporal dynamic model for
gene/protein interaction network in early Drosophila development. Gene Regulation
and Systems Biology, 3, 191-210.
[8]. Chen, B. S., & Li, C. W. (2010) On the noise-enhancing ability of stochastic HodgkinHuxley neuron systems. Neural Computation, 22(7), 1737-1763. (Q2 journal (IF: 1.626)
in COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE - SCIE)
[9]. Li, C. W., & B. S. Chen (2010) Identifying functional mechanisms of gene and protein
regulatory networks in response to a broader range of environmental stresses.
Comparative and Functional Genomics, Article ID 408705. (Q3 journal (IF: 2.032) in
BIOCHEMISTRY & MOLECULAR BIOLOGY - SCIE)
[10]. Chen, B. S., & Li, C. W. (2010) On the interplay between entropy and robustness of
gene regulatory networks. Entropy, 12(5), 1071-1101. (Q2 journal (IF: 1.743) in
PHYSICS, MULTIDISCIPLINARY - SCIE)
[11]. Li, C. W., & Chen, B. S. (2010) Robust observer-based tracking control of HodgkinHuxley neuron systems under environmental disturbances. Neural Computation, 22(12),
3143-3178. (Q2 journal (IF: 1.626) in COMPUTER SCIENCE, ARTIFICIAL
INTELLIGENCE - SCIE)
[12]. Li, C. W., Lo, C. C., & Chen, B. S. (2015) Robust Sensorimotor Control of Human
Arm Model under State-dependent Noises, Control-dependent Noises and Additive
Noises. Neurcomputing, 167, 61-75. (Q1 journal (IF: 2.392) in COMPUTER SCIENCE,
ARTIFICIAL INTELLIGENCE - SCIE)
[13]. Chen, B. S., & Li, C. W. (2015) Measuring information flow in cellular networks by
the systems biology method through microarray data. Frontiers in Plant Science, 6:390.
(Top 10% journal (IF: 4.495) in PLANT SCIENCES - SCIE)
3
[14]. Chen, B. S., Tsai, K. W., & Li, C. W. (2015) Using Nonlinear Stochastic Evolutionary
Game Strategy to Model an Evolutionary Biological Network of Organ Carcinogenesis
Under a Natural Selection Scheme. Evolutionary Bioinformatics, 11, 155-178. (Q3
journal (IF: 1.404) in MATHEMATICAL & COMPUTATIONAL BIOLOGY - SCIE)
[15]. Li, C. W., Lo, C. C., & Chen, B. S. (2016) Estimating Sensorimotor Mapping from
Stimuli to Behaviors to Infer C. elegans movements by Neural Transmission Ability
through Connectome Databases. IEEE Transactions on Neural Networks and Learning
Systems, 27(11), 2229-41. (Top one journal (IF: 4.854) in COMPUTER SCIENCE,
HARDWARE & ARCHITECTURE - SCIE)
[16]. Chen, B. S., Wong, S. W., & Li, C. W. (2015) On the Calculation of System
Entropy in Nonlinear Stochastic Biological Networks. Entropy, 17(10), 6801-33. (Q2
journal (IF: 1.743) in PHYSICS, MULTIDISCIPLINARY - SCIE)
[17]. Wong, Y. H., Lin, C. L., Chen, T. S., Chen, C. A., Jiang, P. S., Lai, Y. H., Chu, L.
J., Li, C. W., Chen, J., & Chen, B. S. (2015) Multiple target drug cocktail design for
attacking the core network markers of four cancers using ligand-based and structurebased virtual screening methods. BMC Medical Genomics, 8(Suppl 4): S4. (Q2 journal
(IF: 2.726) in GENETICS & HEREDITY - SCIE)
[18]. Li, C. W. & Chen, B. S. (2016) Network biomarkers of bladder cancer based on a
genome-wide genetic and epigenetic network derived from next-generation sequencing
data. Disease Markers, Article ID 4149608. (Q2 journal (IF: 2.137) in PATHOLOGY SCIE)
[19]. Li, C. W., Wang, W. H., & Chen, B. S. (2016) Investigating the specific core
genetic-and-epigenetic networks of cellular mechanisms involved in human aging in
peripheral blood mononuclear cells. Oncotarget, 7(8):8556-79. (Q1 journal (IF: 5.008) in
ONCOLOGY - SCIE)
[20]. Chen, B. S., & Li, C. W. (2016) Constructing an integrated genetic and epigenetic
cellular network for whole cellular mechanism using high-throughput next-generation
sequencing data. BMC Systems Biology, 10:18. (Q1 journal (IF: 2.435) in
MATHEMATICAL & COMPUTATIONAL BIOLOGY - SCIE)
4
[21]. Li, C. W. & Chen, B. S. (2016) Investigating Core Genetic-and-epigenetic Cell
Cycle Networks for Stemness and Carcinogenic Mechanisms, and Cancer Drug Design
using Big Database Mining and Genome-wide Next-generation Sequencing Data. Cell
Cycle, 15(19):2593-2607. (Q2 journal (IF: 3.952) in CELL BIOLOGY - SCIE)
[22]. Li, C. W., Lee, Y. L., & Chen, B. S. (2016) Investigating the Genome-wide
Genetic-and-epigenetic Interspecies Networks for Cross-talk Mechanisms and Multimolecule Drug Design in Human Macrophages and Dendritic Cells Both Infected with
Mycobacterium tuberculosis. Frontiers in Cellular and Infection Microbiology, 6:124.
(Q1 journal (IF: 5.218) in MICROBIOLOGY - SCIE) (selected in New perspectives in
evolution: The superorganisms, symbiopoiesis and integration of systems. by editor-inchief Emiliano Salvucci)
[23]. Li, C. W., Chang, P. Y., & Chen, B. S. (2016) Investigating the Mechanism of
Hepatocellular Carcinoma Progression by Constructing Genetic and Epigenetic Networks
Using NGS Data Identification and Big Database Mining Method. Oncotarget,
7(48):79453-79473. (Q1 journal (IF: 5.008) in ONCOLOGY - SCIE)
Articles in conference
[24]. Li, C. W., Chang, W. C., & Chen, B. S. (2006) System identification and robustness
analysis of the circadian regulatory network via microarray data in Arabidopsis thaliana.
Proceedings of the 4th Asia-Pacific Bioinformatics Conference, 13-16 Feb., Taipei,
Taiwan.
[25]. Li, C. W., & Chen, B. S. (2007) Spatio-temporal dynamic model in Drosophila
early development via protein data and microarray data“, The 8th International
Conference on Systems Biology, Oct. 1-6, Long Beach, California.
[26]. Li, C. W., & Chen, B. S. (2016) Identification of Core Neural Network in Response
to Combinatorial Stimuli Based on Transmission Ability of the Caenorhabditis elegans
Connectome”, The International Conference on Machine Learning and Cybernetics
(ICMLC) & Wavelet Analysis and Pattern Recognition (ICWAPR), 10-13 July, Jeju
Island, South Korea.
Brief Biography
Cheng-Wei Li received the Ph.D. degree in electrical engineering from the National Tsing
Hua University (NTHU), Hsinchu, Taiwan, in 2010. He currently joins Dr. Bor-Sen Chen's
5
lab at NTHU (2011-now) to conduct postdoctoral research in systems biology, and
computational neuroscience. Until now, he has published 1 book, 1 book chapter, 3 articles
in conference and 21 articles in refereed journals, including 9 articles in Q1 journals, 7
articles in Q2 journals, and 2 articles in Q3 journals according to the 2015 Journal Citation
Reports ®. His research interests focus on the neural and molecular mechanisms of
Caenorhabditis elegans behavior based on the complete neural connectome.
6