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Curriculum Vitae & Brief Biography Cheng-Wei Li (李征衞) CURRICULUM VITAE Current appointment: Postdoctoral Fellow (2011–) Address: Lab of Control and Systems Biology, National Tsing Hua University, No. 101, Section 2, Kuang-Fu Road, Hsinchu 30013, Taiwan ResearchGate: https://www.researchgate.net/profile/Cheng_Wei_Li3 Tel: +886-3-5715131 Ext. 34057 Cell phone: +886-933-846234 Email: [email protected] EDUCATION Ph.D., Electrical Engineering, National Tsing Hua University (2010/07) Doctoral Dissertation: Robust Sensorimotor Control of Human Arm System under Statedependent Noises, Control-dependent Noises and Additive Noises. B.S., Automatic Control Engineering, Feng Chia University (2003/06) HONOURS & AWARDS Participation in the Lotfi Zadeh Best Paper Award Competition (2016) Selected Publications (2016–) Monograph Chen, B. S., & Li, C. W. (2016) Big Mechanisms in Systems Biology, Big Data Mining, Network Modeling, and Genome-Wide Data Identification. ELSEVIER. Pp. 870. Articles in refereed journals Li, C. W., Lo, C. C., & Chen, B. S. (2016) Estimating Sensorimotor Mapping from Stimuli to Behaviors to Infer C. elegans movements by Neural Transmission Ability through Connectome Databases. IEEE Transactions on Neural Networks and Learning 1 Systems, 27(11), 2229-41. (Top one journal (IF: 4.854) in COMPUTER SCIENCE, HARDWARE & ARCHITECTURE - SCIE) Li, C. W., Wang, W. H., & Chen, B. S. (2016) Investigating the specific core geneticand-epigenetic networks of cellular mechanisms involved in human aging in peripheral blood mononuclear cells. Oncotarget, 7(8):8556-79. (Q1 journal (IF: 5.008) in ONCOLOGY - SCIE) Chen, B. S., & Li, C. W. (2016) Constructing an integrated genetic and epigenetic cellular network for whole cellular mechanism using high-throughput next-generation sequencing data. BMC Systems Biology, 10:18. (Q1 journal (IF: 2.435) in MATHEMATICAL & COMPUTATIONAL BIOLOGY - SCIE) Li, C. W., Lee, Y. L., & Chen, B. S. (2016) Investigating the Genome-wide Genetic-andepigenetic Interspecies Networks for Cross-talk Mechanisms and Multi-molecule Drug Design in Human Macrophages and Dendritic Cells Both Infected with Mycobacterium tuberculosis. Frontiers in Cellular and Infection Microbiology, 6:124. (Q1 journal (IF: 5.218) in MICROBIOLOGY - SCIE) (selected in New perspectives in evolution: The superorganisms, symbiopoiesis and integration of systems. by editor-in-chief Emiliano Salvucci) Li, C. W., Chang, P. Y., & Chen, B. S. (2016) Investigating the Mechanism of Hepatocellular Carcinoma Progression by Constructing Genetic and Epigenetic Networks Using NGS Data Identification and Big Database Mining Method. Oncotarget, 7(48):79453-79473. (Q1 journal (IF: 5.008) in ONCOLOGY - SCIE) Publications Monograph [1]. Chen, B. S., & Li, C. W. (2016) Big Mechanisms in Systems Biology, Big Data Mining, Network Modeling, and Genome-Wide Data Identification. ELSEVIER. Pp. 870. Chapters in books [2]. Chen, B. S., Li, C. W., & Tu, C. T. (2010) Stochastic game theory approach to robust synthetic gene network design. In Qiming Huang (Eds.), Game Theory. SCIYO. Pp. 155177. Articles in refereed journals 2 [3]. Chang, W. C., Li, C. W., & Chen, B. S. (2005) Quantitative inference of dynamic pathways via microarray data. BMC Bioinformatics, 6:44, 1-19. (Q1 journal (IF: 2.435) in MATHEMATICAL & COMPUTATIONAL BIOLOGY - SCIE) [4]. Li, C. W., Chu, Y. H., & Chen, B. S. (2006) Construction and clarification of dynamic gene regulatory network of cancer cell cycle via microarray data. Cancer Informatics, 2, 223-241. [5]. Chen, B. S., & Li, C. W. (2007) Analyzing microarray data in drug discovery using systems biology. Expert Opinion on Drug Discovery, 2(5), 755-768. (Q1 journal (IF: 3.484) in PHARMACOLOGY & PHARMACY - SCIE) [6]. Li, C.W., Chang, W.C. & Chen, B.S. (2009) System identification and robustness analysis of the circadian regulatory network via ARX stochastic interactive model. International Journal of Computational Intelligence in Control, 1(1), 37-55. [7]. Li, C. W., & Chen, B. S. (2009) Stochastic spatio-temporal dynamic model for gene/protein interaction network in early Drosophila development. Gene Regulation and Systems Biology, 3, 191-210. [8]. Chen, B. S., & Li, C. W. (2010) On the noise-enhancing ability of stochastic HodgkinHuxley neuron systems. Neural Computation, 22(7), 1737-1763. (Q2 journal (IF: 1.626) in COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE - SCIE) [9]. Li, C. W., & B. S. Chen (2010) Identifying functional mechanisms of gene and protein regulatory networks in response to a broader range of environmental stresses. Comparative and Functional Genomics, Article ID 408705. (Q3 journal (IF: 2.032) in BIOCHEMISTRY & MOLECULAR BIOLOGY - SCIE) [10]. Chen, B. S., & Li, C. W. (2010) On the interplay between entropy and robustness of gene regulatory networks. Entropy, 12(5), 1071-1101. (Q2 journal (IF: 1.743) in PHYSICS, MULTIDISCIPLINARY - SCIE) [11]. Li, C. W., & Chen, B. S. (2010) Robust observer-based tracking control of HodgkinHuxley neuron systems under environmental disturbances. Neural Computation, 22(12), 3143-3178. (Q2 journal (IF: 1.626) in COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE - SCIE) [12]. Li, C. W., Lo, C. C., & Chen, B. S. (2015) Robust Sensorimotor Control of Human Arm Model under State-dependent Noises, Control-dependent Noises and Additive Noises. Neurcomputing, 167, 61-75. (Q1 journal (IF: 2.392) in COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE - SCIE) [13]. Chen, B. S., & Li, C. W. (2015) Measuring information flow in cellular networks by the systems biology method through microarray data. Frontiers in Plant Science, 6:390. (Top 10% journal (IF: 4.495) in PLANT SCIENCES - SCIE) 3 [14]. Chen, B. S., Tsai, K. W., & Li, C. W. (2015) Using Nonlinear Stochastic Evolutionary Game Strategy to Model an Evolutionary Biological Network of Organ Carcinogenesis Under a Natural Selection Scheme. Evolutionary Bioinformatics, 11, 155-178. (Q3 journal (IF: 1.404) in MATHEMATICAL & COMPUTATIONAL BIOLOGY - SCIE) [15]. Li, C. W., Lo, C. C., & Chen, B. S. (2016) Estimating Sensorimotor Mapping from Stimuli to Behaviors to Infer C. elegans movements by Neural Transmission Ability through Connectome Databases. IEEE Transactions on Neural Networks and Learning Systems, 27(11), 2229-41. (Top one journal (IF: 4.854) in COMPUTER SCIENCE, HARDWARE & ARCHITECTURE - SCIE) [16]. Chen, B. S., Wong, S. W., & Li, C. W. (2015) On the Calculation of System Entropy in Nonlinear Stochastic Biological Networks. Entropy, 17(10), 6801-33. (Q2 journal (IF: 1.743) in PHYSICS, MULTIDISCIPLINARY - SCIE) [17]. Wong, Y. H., Lin, C. L., Chen, T. S., Chen, C. A., Jiang, P. S., Lai, Y. H., Chu, L. J., Li, C. W., Chen, J., & Chen, B. S. (2015) Multiple target drug cocktail design for attacking the core network markers of four cancers using ligand-based and structurebased virtual screening methods. BMC Medical Genomics, 8(Suppl 4): S4. (Q2 journal (IF: 2.726) in GENETICS & HEREDITY - SCIE) [18]. Li, C. W. & Chen, B. S. (2016) Network biomarkers of bladder cancer based on a genome-wide genetic and epigenetic network derived from next-generation sequencing data. Disease Markers, Article ID 4149608. (Q2 journal (IF: 2.137) in PATHOLOGY SCIE) [19]. Li, C. W., Wang, W. H., & Chen, B. S. (2016) Investigating the specific core genetic-and-epigenetic networks of cellular mechanisms involved in human aging in peripheral blood mononuclear cells. Oncotarget, 7(8):8556-79. (Q1 journal (IF: 5.008) in ONCOLOGY - SCIE) [20]. Chen, B. S., & Li, C. W. (2016) Constructing an integrated genetic and epigenetic cellular network for whole cellular mechanism using high-throughput next-generation sequencing data. BMC Systems Biology, 10:18. (Q1 journal (IF: 2.435) in MATHEMATICAL & COMPUTATIONAL BIOLOGY - SCIE) 4 [21]. Li, C. W. & Chen, B. S. (2016) Investigating Core Genetic-and-epigenetic Cell Cycle Networks for Stemness and Carcinogenic Mechanisms, and Cancer Drug Design using Big Database Mining and Genome-wide Next-generation Sequencing Data. Cell Cycle, 15(19):2593-2607. (Q2 journal (IF: 3.952) in CELL BIOLOGY - SCIE) [22]. Li, C. W., Lee, Y. L., & Chen, B. S. (2016) Investigating the Genome-wide Genetic-and-epigenetic Interspecies Networks for Cross-talk Mechanisms and Multimolecule Drug Design in Human Macrophages and Dendritic Cells Both Infected with Mycobacterium tuberculosis. Frontiers in Cellular and Infection Microbiology, 6:124. (Q1 journal (IF: 5.218) in MICROBIOLOGY - SCIE) (selected in New perspectives in evolution: The superorganisms, symbiopoiesis and integration of systems. by editor-inchief Emiliano Salvucci) [23]. Li, C. W., Chang, P. Y., & Chen, B. S. (2016) Investigating the Mechanism of Hepatocellular Carcinoma Progression by Constructing Genetic and Epigenetic Networks Using NGS Data Identification and Big Database Mining Method. Oncotarget, 7(48):79453-79473. (Q1 journal (IF: 5.008) in ONCOLOGY - SCIE) Articles in conference [24]. Li, C. W., Chang, W. C., & Chen, B. S. (2006) System identification and robustness analysis of the circadian regulatory network via microarray data in Arabidopsis thaliana. Proceedings of the 4th Asia-Pacific Bioinformatics Conference, 13-16 Feb., Taipei, Taiwan. [25]. Li, C. W., & Chen, B. S. (2007) Spatio-temporal dynamic model in Drosophila early development via protein data and microarray data“, The 8th International Conference on Systems Biology, Oct. 1-6, Long Beach, California. [26]. Li, C. W., & Chen, B. S. (2016) Identification of Core Neural Network in Response to Combinatorial Stimuli Based on Transmission Ability of the Caenorhabditis elegans Connectome”, The International Conference on Machine Learning and Cybernetics (ICMLC) & Wavelet Analysis and Pattern Recognition (ICWAPR), 10-13 July, Jeju Island, South Korea. Brief Biography Cheng-Wei Li received the Ph.D. degree in electrical engineering from the National Tsing Hua University (NTHU), Hsinchu, Taiwan, in 2010. He currently joins Dr. Bor-Sen Chen's 5 lab at NTHU (2011-now) to conduct postdoctoral research in systems biology, and computational neuroscience. Until now, he has published 1 book, 1 book chapter, 3 articles in conference and 21 articles in refereed journals, including 9 articles in Q1 journals, 7 articles in Q2 journals, and 2 articles in Q3 journals according to the 2015 Journal Citation Reports ®. His research interests focus on the neural and molecular mechanisms of Caenorhabditis elegans behavior based on the complete neural connectome. 6