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Transcript 
[SHRINE-745] run query adapter not properly handling INCOMPLETE status
from CRC Created: 17/Dec/12 Updated: 19/Jun/14 Resolved: 26/Feb/14
Status:
Project:
Component/s:
Affects
Version/s:
Fix Version/s:
Closed
SHRINE
Adapter
1.14
Type:
Reporter:
Resolution:
Labels:
Remaining
Estimate:
Time Spent:
Original
Estimate:
Bug
Bill Simons
Fixed
None
Not Specified
1.15
Priority:
Assignee:
Votes:
Medium
Clint Gilbert (Inactive)
0
Not Specified
Not Specified
Description
Response from CRC:
<ns5:response xmlns:ns2="http://www.i2b2.org/xsd/hive/pdo/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/cr
xmlns:ns5="http://www.i2b2.org/xsd/hive/msg/1.1/" xmlns:ns6="http://www.i2b2.org/xsd/cell/crc/psm/queryde
<message_header>
<i2b2_version_compatible>1.1</i2b2_version_compatible>
<hl7_version_compatible>2.4</hl7_version_compatible>
<sending_application>
<application_name>edu.harvard.i2b2.crc</application_name>
<application_version>1.5</application_version>
</sending_application>
<sending_facility>
<facility_name>i2b2 Hive</facility_name>
</sending_facility>
<receiving_application>
<application_name>i2b2_QueryTool</application_name>
<application_version>0.2</application_version>
</receiving_application>
<receiving_facility>
<facility_name>i2b2 Hive</facility_name>
</receiving_facility>
<message_control_id>
<instance_num>1</instance_num>
</message_control_id>
<project_id>i2b2</project_id>
</message_header>
<response_header>
<info>Log information</info>
<result_status>
<status type="DONE">DONE</status>
<polling_url interval_ms="100" />
</result_status>
</response_header>
<message_body>
<ns4:response xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:type="ns4:master_instance
<status>
<condition type="RUNNING">RUNNING</condition>
</status>
<query_master>
<query_master_id>2966</query_master_id>
<name>219b2d88-def5-48c0-9000-1d755884c590</name>
<user_id>demo</user_id>
<group_id>i2b2</group_id>
<create_date>2012-12-17T15:19:48.000-05:00</create_date>
<request_xml>&lt;?xml version="1.0" encoding="UTF-8" standalone="yes"?>
&lt;ns2:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
&lt;query_name>219b2d88-def5-48c0-9000-1d755884c590&lt;/query_name>
&lt;specificity_scale>0&lt;/specificity_scale>
&lt;panel>
&lt;panel_number>1&lt;/panel_number>
&lt;panel_accuracy_scale>0&lt;/panel_accuracy_scale>
&lt;invert>0&lt;/invert>
&lt;total_item_occurrences>1&lt;/total_item_occurrences>
&lt;item>
&lt;hlevel>3&lt;/hlevel>
&lt;item_name>\\i2b2\i2b2\Demographics\Gender\Male\&lt;/item_name>
&lt;item_key>\\i2b2\i2b2\Demographics\Gender\Male\&lt;/item_key>
&lt;item_icon>LA&lt;/item_icon>
&lt;tooltip>\\i2b2\i2b2\Demographics\Gender\Male\&lt;/tooltip>
&lt;class>ENC&lt;/class>
&lt;constrain_by_date/>
&lt;item_is_synonym>false&lt;/item_is_synonym>
&lt;/item>
&lt;/panel>
&lt;panel>
&lt;panel_number>2&lt;/panel_number>
&lt;panel_accuracy_scale>0&lt;/panel_accuracy_scale>
&lt;invert>0&lt;/invert>
&lt;total_item_occurrences>1&lt;/total_item_occurrences>
&lt;item>
&lt;hlevel>6&lt;/hlevel>
&lt;item_name>\\i2b2\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-4
&lt;item_key>\\i2b2\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-49
&lt;item_icon>LA&lt;/item_icon>
&lt;tooltip>\\i2b2\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)
&lt;class>ENC&lt;/class>
&lt;constrain_by_date/>
&lt;item_is_synonym>false&lt;/item_is_synonym>
&lt;/item>
&lt;item>
&lt;hlevel>5&lt;/hlevel>
&lt;item_name>\\i2b2\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-4
&lt;item_key>\\i2b2\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-49
&lt;item_icon>LA&lt;/item_icon>
&lt;tooltip>\\i2b2\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)
&lt;class>ENC&lt;/class>
&lt;constrain_by_date/>
&lt;item_is_synonym>false&lt;/item_is_synonym>
&lt;/item>
&lt;item>
&lt;hlevel>6&lt;/hlevel>
&lt;item_name>\\i2b2\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-4
&lt;item_key>\\i2b2\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-49
&lt;item_icon>LA&lt;/item_icon>
&lt;tooltip>\\i2b2\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)
&lt;class>ENC&lt;/class>
&lt;constrain_by_date/>
&lt;item_is_synonym>false&lt;/item_is_synonym>
&lt;/item>
&lt;item>
&lt;hlevel>6&lt;/hlevel>
&lt;item_name>\\i2b2\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-4
&lt;item_key>\\i2b2\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-49
&lt;item_icon>LA&lt;/item_icon>
&lt;tooltip>\\i2b2\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)
&lt;class>ENC&lt;/class>
&lt;constrain_by_date/>
&lt;item_is_synonym>false&lt;/item_is_synonym>
&lt;/item>
&lt;item>
&lt;hlevel>6&lt;/hlevel>
&lt;item_name>\\i2b2\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-4
&lt;item_key>\\i2b2\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-49
&lt;item_icon>LA&lt;/item_icon>
&lt;tooltip>\\i2b2\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)
&lt;class>ENC&lt;/class>
&lt;constrain_by_date/>
&lt;item_is_synonym>false&lt;/item_is_synonym>
&lt;/item>
&lt;item>
&lt;hlevel>6&lt;/hlevel>
&lt;item_name>\\i2b2\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-4
&lt;item_key>\\i2b2\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-49
&lt;item_icon>LA&lt;/item_icon>
&lt;tooltip>\\i2b2\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)
&lt;class>ENC&lt;/class>
&lt;constrain_by_date/>
&lt;item_is_synonym>false&lt;/item_is_synonym>
&lt;/item>
&lt;item>
&lt;hlevel>6&lt;/hlevel>
&lt;item_name>\\i2b2\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-4
&lt;item_key>\\i2b2\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-49
&lt;item_icon>LA&lt;/item_icon>
&lt;tooltip>\\i2b2\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)
&lt;class>ENC&lt;/class>
&lt;constrain_by_date/>
&lt;item_is_synonym>false&lt;/item_is_synonym>
&lt;/item>
&lt;item>
&lt;hlevel>6&lt;/hlevel>
&lt;item_name>\\i2b2\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-4
&lt;item_key>\\i2b2\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-49
&lt;item_icon>LA&lt;/item_icon>
&lt;tooltip>\\i2b2\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)
&lt;class>ENC&lt;/class>
&lt;constrain_by_date/>
&lt;item_is_synonym>false&lt;/item_is_synonym>
&lt;/item>
&lt;item>
&lt;hlevel>6&lt;/hlevel>
&lt;item_name>\\i2b2\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-4
&lt;item_key>\\i2b2\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-49
&lt;item_icon>LA&lt;/item_icon>
&lt;tooltip>\\i2b2\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)
&lt;class>ENC&lt;/class>
&lt;constrain_by_date/>
&lt;item_is_synonym>false&lt;/item_is_synonym>
&lt;/item>
&lt;item>
&lt;hlevel>6&lt;/hlevel>
&lt;item_name>\\i2b2\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-4
&lt;item_key>\\i2b2\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-49
&lt;item_icon>LA&lt;/item_icon>
&lt;tooltip>\\i2b2\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)
&lt;class>ENC&lt;/class>
&lt;constrain_by_date/>
&lt;item_is_synonym>false&lt;/item_is_synonym>
&lt;/item>
&lt;item>
&lt;hlevel>6&lt;/hlevel>
&lt;item_name>\\i2b2\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-4
&lt;item_key>\\i2b2\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-49
&lt;item_icon>LA&lt;/item_icon>
&lt;tooltip>\\i2b2\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)
&lt;class>ENC&lt;/class>
&lt;constrain_by_date/>
&lt;item_is_synonym>false&lt;/item_is_synonym>
&lt;/item>
&lt;item>
&lt;hlevel>6&lt;/hlevel>
&lt;item_name>\\i2b2\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-4
&lt;item_key>\\i2b2\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-49
&lt;item_icon>LA&lt;/item_icon>
&lt;tooltip>\\i2b2\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)
&lt;class>ENC&lt;/class>
&lt;constrain_by_date/>
&lt;item_is_synonym>false&lt;/item_is_synonym>
&lt;/item>
&lt;item>
&lt;hlevel>6&lt;/hlevel>
&lt;item_name>\\i2b2\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-4
&lt;item_key>\\i2b2\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-49
&lt;item_icon>LA&lt;/item_icon>
&lt;tooltip>\\i2b2\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)
&lt;class>ENC&lt;/class>
&lt;constrain_by_date/>
&lt;item_is_synonym>false&lt;/item_is_synonym>
&lt;/item>
&lt;item>
&lt;hlevel>6&lt;/hlevel>
&lt;item_name>\\i2b2\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-4
&lt;item_key>\\i2b2\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-49
&lt;item_icon>LA&lt;/item_icon>
&lt;tooltip>\\i2b2\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)
&lt;class>ENC&lt;/class>
&lt;constrain_by_date/>
&lt;item_is_synonym>false&lt;/item_is_synonym>
&lt;/item>
&lt;/panel>
&lt;/ns2:query_definition>
</request_xml>
</query_master>
<query_instance>
<query_instance_id>2946</query_instance_id>
<query_master_id>2966</query_master_id>
<user_id>demo</user_id>
<group_id>i2b2</group_id>
<start_date>2012-12-17T15:19:48.000-05:00</start_date>
<end_date>2012-12-17T15:19:48.000-05:00</end_date>
<query_status_type>
<status_type_id>5</status_type_id>
<name>INCOMPLETE</name>
<description>INCOMPLETE</description>
</query_status_type>
</query_instance>
<query_result_instance>
<result_instance_id>3126</result_instance_id>
<query_instance_id>2946</query_instance_id>
<query_result_type>
<result_type_id>6</result_type_id>
<name>PATIENT_VITALSTATUS_COUNT_XML</name>
<display_type>CATNUM</display_type>
<visual_attribute_type>LA</visual_attribute_type>
<description>Vital Status patient breakdown</description>
</query_result_type>
<set_size>0</set_size>
<start_date>2012-12-17T15:19:48.000-05:00</start_date>
<query_status_type>
<status_type_id>1</status_type_id>
<name>QUEUED</name>
<description> WAITING IN QUEUE TO START PROCESS</description>
</query_status_type>
</query_result_instance>
<query_result_instance>
<result_instance_id>3127</result_instance_id>
<query_instance_id>2946</query_instance_id>
<query_result_type>
<result_type_id>5</result_type_id>
<name>PATIENT_GENDER_COUNT_XML</name>
<display_type>CATNUM</display_type>
<visual_attribute_type>LA</visual_attribute_type>
<description>Gender patient breakdown</description>
</query_result_type>
<set_size>0</set_size>
<start_date>2012-12-17T15:19:48.000-05:00</start_date>
<query_status_type>
<status_type_id>1</status_type_id>
<name>QUEUED</name>
<description> WAITING IN QUEUE TO START PROCESS</description>
</query_status_type>
</query_result_instance>
<query_result_instance>
<result_instance_id>3128</result_instance_id>
<query_instance_id>2946</query_instance_id>
<query_result_type>
<result_type_id>8</result_type_id>
<name>PATIENT_AGE_COUNT_XML</name>
<display_type>CATNUM</display_type>
<visual_attribute_type>LA</visual_attribute_type>
<description>Age patient breakdown</description>
</query_result_type>
<set_size>0</set_size>
<start_date>2012-12-17T15:19:48.000-05:00</start_date>
<query_status_type>
<status_type_id>1</status_type_id>
<name>QUEUED</name>
<description> WAITING IN QUEUE TO START PROCESS</description>
</query_status_type>
</query_result_instance>
<query_result_instance>
<result_instance_id>3129</result_instance_id>
<query_instance_id>2946</query_instance_id>
<query_result_type>
<result_type_id>4</result_type_id>
<name>PATIENT_COUNT_XML</name>
<display_type>CATNUM</display_type>
<visual_attribute_type>LA</visual_attribute_type>
<description>Number of patients</description>
</query_result_type>
<set_size>0</set_size>
<start_date>2012-12-17T15:19:48.000-05:00</start_date>
<query_status_type>
<status_type_id>1</status_type_id>
<name>QUEUED</name>
<description> WAITING IN QUEUE TO START PROCESS</description>
</query_status_type>
</query_result_instance>
<query_result_instance>
<result_instance_id>3130</result_instance_id>
<query_instance_id>2946</query_instance_id>
<query_result_type>
<result_type_id>7</result_type_id>
<name>PATIENT_RACE_COUNT_XML</name>
<display_type>CATNUM</display_type>
<visual_attribute_type>LA</visual_attribute_type>
<description>Race patient breakdown</description>
</query_result_type>
<set_size>0</set_size>
<start_date>2012-12-17T15:19:48.000-05:00</start_date>
<end_date>2012-12-17T15:19:48.000-05:00</end_date>
<query_status_type>
<status_type_id>2</status_type_id>
<name>PROCESSING</name>
<description>PROCESSING</description>
</query_status_type>
</query_result_instance>
</ns4:response>
</message_body>
</ns5:response>
2012-Dec-17-15:19:58.752 DEBUG [SHRINE][RunQueryAdapter][pool-1-thread-43][] Request to CRC:
<ns6:request xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns8="http://sheriff.shrine.net/" xmln
xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/pdo/1.1/"
xmlns:ns5="http://www.i2b2.org/xsd/hive/plugin/"><message_header><proxy><redirect_url>https://localhost/s
version&gt;&lt;/sending_application&gt;&lt;sending_facility&gt;&lt;facility_name&gt;SHRINE&lt;/facility_na
g_application&gt;&lt;receiving_facility&gt;&lt;facility_name&gt;SHRINE&lt;/facility_name&gt;&lt;/receiving
is_token="false">demouser</password></security><message_type><message_code>Q04</message_code><ev
ssing_id>P</processing_id><processing_mode>I</processing_mode></processing_id><accept_acknowledgem
header><message_body><ns4:psmheader><user login="demo">demo</user><patient_set_limit>0</patient_set
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"><query_result_instance_id>3127</query_result_in
2012-Dec-17-15:19:58.960 DEBUG [SHRINE][RunQueryAdapter][pool-1-thread-43][] Calling the CRC took 2
2012-Dec-17-15:19:58.961 DEBUG [SHRINE][RunQueryAdapter][pool-1-thread-43][] Response from CRC:
<ns5:response xmlns:ns2="http://www.i2b2.org/xsd/hive/pdo/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/cr
xmlns:ns5="http://www.i2b2.org/xsd/hive/msg/1.1/" xmlns:ns6="http://www.i2b2.org/xsd/cell/crc/psm/queryde
<message_header>
<i2b2_version_compatible>1.1</i2b2_version_compatible>
<hl7_version_compatible>2.4</hl7_version_compatible>
<sending_application>
<application_name>edu.harvard.i2b2.crc</application_name>
<application_version>1.5</application_version>
</sending_application>
<sending_facility>
<facility_name>i2b2 Hive</facility_name>
</sending_facility>
<receiving_application>
<application_name>i2b2_QueryTool</application_name>
<application_version>0.2</application_version>
</receiving_application>
<receiving_facility>
<facility_name>i2b2 Hive</facility_name>
</receiving_facility>
<message_control_id>
<instance_num>1</instance_num>
</message_control_id>
<project_id>i2b2</project_id>
</message_header>
<response_header>
<info>Log information</info>
<result_status>
<status type="DONE">DONE</status>
<polling_url interval_ms="100" />
</result_status>
</response_header>
<message_body>
<ns4:response xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:type="ns4:crc_xml_result_
<status>
<condition type="ERROR">Query result instance id 3127 not found</condition>
</status>
</ns4:response>
</message_body>
</ns5:response>
2012-Dec-17-15:19:58.971 DEBUG [SHRINE][RunQueryAdapter][pool-1-thread-43][] Request to CRC:
<ns6:request xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns8="http://sheriff.shrine.net/" xmln
xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/pdo/1.1/"
xmlns:ns5="http://www.i2b2.org/xsd/hive/plugin/"><message_header><proxy><redirect_url>https://localhost/s
version&gt;&lt;/sending_application&gt;&lt;sending_facility&gt;&lt;facility_name&gt;SHRINE&lt;/facility_na
g_application&gt;&lt;receiving_facility&gt;&lt;facility_name&gt;SHRINE&lt;/facility_name&gt;&lt;/receiving
is_token="false">demouser</password></security><message_type><message_code>Q04</message_code><ev
ssing_id>P</processing_id><processing_mode>I</processing_mode></processing_id><accept_acknowledgem
header><message_body><ns4:psmheader><user login="demo">demo</user><patient_set_limit>0</patient_set
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"><query_result_instance_id>3128</query_result_in
2012-Dec-17-15:19:59.142 DEBUG [SHRINE][RunQueryAdapter][pool-1-thread-43][] Calling the CRC took 1
2012-Dec-17-15:19:59.143 DEBUG [SHRINE][RunQueryAdapter][pool-1-thread-43][] Response from CRC:
<ns5:response xmlns:ns2="http://www.i2b2.org/xsd/hive/pdo/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/cr
xmlns:ns5="http://www.i2b2.org/xsd/hive/msg/1.1/" xmlns:ns6="http://www.i2b2.org/xsd/cell/crc/psm/queryde
<message_header>
<i2b2_version_compatible>1.1</i2b2_version_compatible>
<hl7_version_compatible>2.4</hl7_version_compatible>
<sending_application>
<application_name>edu.harvard.i2b2.crc</application_name>
<application_version>1.5</application_version>
</sending_application>
<sending_facility>
<facility_name>i2b2 Hive</facility_name>
</sending_facility>
<receiving_application>
<application_name>i2b2_QueryTool</application_name>
<application_version>0.2</application_version>
</receiving_application>
<receiving_facility>
<facility_name>i2b2 Hive</facility_name>
</receiving_facility>
<message_control_id>
<instance_num>1</instance_num>
</message_control_id>
<project_id>i2b2</project_id>
</message_header>
<response_header>
<info>Log information</info>
<result_status>
<status type="DONE">DONE</status>
<polling_url interval_ms="100" />
</result_status>
</response_header>
<message_body>
<ns4:response xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:type="ns4:crc_xml_result_
<status>
<condition type="ERROR">Query result instance id 3128 not found</condition>
</status>
</ns4:response>
</message_body>
</ns5:response>
2012-Dec-17-15:19:59.153 DEBUG [SHRINE][RunQueryAdapter][pool-1-thread-43][] Request to CRC:
<ns6:request xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns8="http://sheriff.shrine.net/" xmln
xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/pdo/1.1/"
xmlns:ns5="http://www.i2b2.org/xsd/hive/plugin/"><message_header><proxy><redirect_url>https://localhost/s
version&gt;&lt;/sending_application&gt;&lt;sending_facility&gt;&lt;facility_name&gt;SHRINE&lt;/facility_na
g_application&gt;&lt;receiving_facility&gt;&lt;facility_name&gt;SHRINE&lt;/facility_name&gt;&lt;/receiving
is_token="false">demouser</password></security><message_type><message_code>Q04</message_code><ev
ssing_id>P</processing_id><processing_mode>I</processing_mode></processing_id><accept_acknowledgem
header><message_body><ns4:psmheader><user login="demo">demo</user><patient_set_limit>0</patient_set
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"><query_result_instance_id>3126</query_result_in
2012-Dec-17-15:20:00.237 DEBUG [SHRINE][RunQueryAdapter][pool-1-thread-43][] Calling the CRC took 1
2012-Dec-17-15:20:00.237 DEBUG [SHRINE][RunQueryAdapter][pool-1-thread-43][] Response from CRC:
<ns5:response xmlns:ns2="http://www.i2b2.org/xsd/hive/pdo/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/cr
xmlns:ns5="http://www.i2b2.org/xsd/hive/msg/1.1/" xmlns:ns6="http://www.i2b2.org/xsd/cell/crc/psm/queryde
<message_header>
<i2b2_version_compatible>1.1</i2b2_version_compatible>
<hl7_version_compatible>2.4</hl7_version_compatible>
<sending_application>
<application_name>edu.harvard.i2b2.crc</application_name>
<application_version>1.5</application_version>
</sending_application>
<sending_facility>
<facility_name>i2b2 Hive</facility_name>
</sending_facility>
<receiving_application>
<application_name>i2b2_QueryTool</application_name>
<application_version>0.2</application_version>
</receiving_application>
<receiving_facility>
<facility_name>i2b2 Hive</facility_name>
</receiving_facility>
<message_control_id>
<instance_num>1</instance_num>
</message_control_id>
<project_id>i2b2</project_id>
</message_header>
<response_header>
<info>Log information</info>
<result_status>
<status type="DONE">DONE</status>
<polling_url interval_ms="100" />
</result_status>
</response_header>
<message_body>
<ns4:response xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:type="ns4:crc_xml_result_
<status>
<condition type="ERROR">Query result instance id 3126 not found</condition>
</status>
</ns4:response>
</message_body>
</ns5:response>
2012-Dec-17-15:20:00.249 DEBUG [SHRINE][RunQueryAdapter][pool-1-thread-43][] Request to CRC:
<ns6:request xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns8="http://sheriff.shrine.net/" xmln
xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/pdo/1.1/"
xmlns:ns5="http://www.i2b2.org/xsd/hive/plugin/"><message_header><proxy><redirect_url>https://localhost/s
version&gt;&lt;/sending_application&gt;&lt;sending_facility&gt;&lt;facility_name&gt;SHRINE&lt;/facility_na
g_application&gt;&lt;receiving_facility&gt;&lt;facility_name&gt;SHRINE&lt;/facility_name&gt;&lt;/receiving
is_token="false">demouser</password></security><message_type><message_code>Q04</message_code><ev
ssing_id>P</processing_id><processing_mode>I</processing_mode></processing_id><accept_acknowledgem
header><message_body><ns4:psmheader><user login="demo">demo</user><patient_set_limit>0</patient_set
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"><query_result_instance_id>3130</query_result_in
2012-Dec-17-15:20:00.468 DEBUG [SHRINE][RunQueryAdapter][pool-1-thread-43][] Calling the CRC took 2
2012-Dec-17-15:20:00.468 DEBUG [SHRINE][RunQueryAdapter][pool-1-thread-43][] Response from CRC:
<ns5:response xmlns:ns2="http://www.i2b2.org/xsd/hive/pdo/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/cr
xmlns:ns5="http://www.i2b2.org/xsd/hive/msg/1.1/" xmlns:ns6="http://www.i2b2.org/xsd/cell/crc/psm/queryde
<message_header>
<i2b2_version_compatible>1.1</i2b2_version_compatible>
<hl7_version_compatible>2.4</hl7_version_compatible>
<sending_application>
<application_name>edu.harvard.i2b2.crc</application_name>
<application_version>1.5</application_version>
</sending_application>
<sending_facility>
<facility_name>i2b2 Hive</facility_name>
</sending_facility>
<receiving_application>
<application_name>i2b2_QueryTool</application_name>
<application_version>0.2</application_version>
</receiving_application>
<receiving_facility>
<facility_name>i2b2 Hive</facility_name>
</receiving_facility>
<message_control_id>
<instance_num>1</instance_num>
</message_control_id>
<project_id>i2b2</project_id>
</message_header>
<response_header>
<info>Log information</info>
<result_status>
<status type="DONE">DONE</status>
<polling_url interval_ms="100" />
</result_status>
</response_header>
<message_body>
<ns4:response xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:type="ns4:crc_xml_result_
<status>
<condition type="ERROR">Query result instance id 3130 not found</condition>
</status>
</ns4:response>
</message_body>
</ns5:response>
2012-Dec-17-15:20:00.623 ERROR [SHRINE][RunQueryAdapter][pool-1-thread-43][] Couldn't load breakdow
java.lang.Exception: Error unmarshalling an I2b2ResultEnvelope$ from '<ns5:response xmlns:ns8="http://www
xmlns:ns6="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns5="http://www.i2b2.org/xsd/hi
xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns2="http://www.i2b2.org/xsd/hive/pdo/1.1/">
<message_header>
<i2b2_version_compatible>1.1</i2b2_version_compatible>
<hl7_version_compatible>2.4</hl7_version_compatible>
<sending_application>
<application_name>edu.harvard.i2b2.crc</application_name>
<application_version>1.5</application_version>
</sending_application>
<sending_facility>
<facility_name>i2b2 Hive</facility_name>
</sending_facility>
<receiving_application>
<application_name>i2b2_QueryTool</application_name>
<application_version>0.2</application_version>
</receiving_application>
<receiving_facility>
<facility_name>i2b2 Hive</facility_name>
</receiving_facility>
<message_control_id>
<instance_num>1</instance_num>
</message_control_id>
<project_id>i2b2</project_id>
</message_header>
<response_header>
<info>Log information</info>
<result_status>
<status type="DONE">DONE</status>
<polling_url interval_ms="100"></polling_url>
</result_status>
</response_header>
<message_body>
<ns4:response xsi:type="ns4:crc_xml_result_responseType" xmlns:xsi="http://www.w3.org/2001/XMLSch
<status>
<condition type="ERROR">Query result instance id 3127 not found</condition>
</status>
</ns4:response>
</message_body>
</ns5:response>'
at net.shrine.protocol.ReadResultResponse$.envelope$1(ReadResultResponse.scala:61)
at net.shrine.protocol.ReadResultResponse$$anonfun$fromI2b2$1.apply(ReadResultResponse.scala:68)
at net.shrine.protocol.ReadResultResponse$$anonfun$fromI2b2$1.apply(ReadResultResponse.scala:68)
at net.shrine.protocol.ReadResultResponse$.unmarshal(ReadResultResponse.scala:78)
at net.shrine.protocol.ReadResultResponse$.fromI2b2(ReadResultResponse.scala:67)
at net.shrine.protocol.ReadResultResponse$.fromI2b2(ReadResultResponse.scala:42)
at net.shrine.serialization.I2b2Unmarshaller$class.fromI2b2(I2b2Unmarshaller.scala:20)
at net.shrine.protocol.ReadResultResponse$.fromI2b2(ReadResultResponse.scala:42)
at net.shrine.adapter.RunQueryAdapter$$anonfun$attemptToRetrieveBreakdowns$1$$anonfun$apply$5.ap
at net.shrine.adapter.RunQueryAdapter$$anonfun$attemptToRetrieveBreakdowns$1$$anonfun$apply$5.ap
at net.shrine.util.Try$.apply(Try.scala:139)
at net.shrine.adapter.RunQueryAdapter$$anonfun$attemptToRetrieveBreakdowns$1.apply(RunQueryAdap
at net.shrine.adapter.RunQueryAdapter$$anonfun$attemptToRetrieveBreakdowns$1.apply(RunQueryAdap
at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:233)
at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:233)
at scala.collection.LinearSeqOptimized$class.foreach(LinearSeqOptimized.scala:59)
at scala.collection.immutable.List.foreach(List.scala:76)
at scala.collection.TraversableLike$class.map(TraversableLike.scala:233)
at scala.collection.immutable.List.map(List.scala:76)
at net.shrine.adapter.RunQueryAdapter.attemptToRetrieveBreakdowns(RunQueryAdapter.scala:124)
at net.shrine.adapter.RunQueryAdapter.processRequest(RunQueryAdapter.scala:74)
at net.shrine.adapter.RunQueryAdapter.processRequest(RunQueryAdapter.scala:35)
at net.shrine.adapter.Adapter.perform(Adapter.scala:30)
at net.shrine.adapter.Adapter.perform(Adapter.scala:23)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:318)
at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInv
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.
at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:1
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
at $Proxy67.perform(Unknown Source)
at org.spin.node.actions.QueryAdapter.perform(QueryAdapter.java:128)
at org.spin.node.OnlineNodeState.performQuery(OnlineNodeState.java:765)
at org.spin.node.OnlineNodeState.doQueryAction(OnlineNodeState.java:727)
at org.spin.node.QueryOperation.doQueryAction(QueryOperation.java:81)
at org.spin.node.QueryOperation.run(QueryOperation.java:57)
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
at java.lang.Thread.run(Thread.java:662)
2012-Dec-17-15:20:00.624 ERROR [SHRINE][RunQueryAdapter][pool-1-thread-43][] Couldn't load breakdow
java.lang.Exception: Error unmarshalling an I2b2ResultEnvelope$ from '<ns5:response xmlns:ns8="http://www
xmlns:ns6="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns5="http://www.i2b2.org/xsd/hi
xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns2="http://www.i2b2.org/xsd/hive/pdo/1.1/">
<message_header>
<i2b2_version_compatible>1.1</i2b2_version_compatible>
<hl7_version_compatible>2.4</hl7_version_compatible>
<sending_application>
<application_name>edu.harvard.i2b2.crc</application_name>
<application_version>1.5</application_version>
</sending_application>
<sending_facility>
<facility_name>i2b2 Hive</facility_name>
</sending_facility>
<receiving_application>
<application_name>i2b2_QueryTool</application_name>
<application_version>0.2</application_version>
</receiving_application>
<receiving_facility>
<facility_name>i2b2 Hive</facility_name>
</receiving_facility>
<message_control_id>
<instance_num>1</instance_num>
</message_control_id>
<project_id>i2b2</project_id>
</message_header>
<response_header>
<info>Log information</info>
<result_status>
<status type="DONE">DONE</status>
<polling_url interval_ms="100"></polling_url>
</result_status>
</response_header>
<message_body>
<ns4:response xsi:type="ns4:crc_xml_result_responseType" xmlns:xsi="http://www.w3.org/2001/XMLSch
<status>
<condition type="ERROR">Query result instance id 3128 not found</condition>
</status>
</ns4:response>
</message_body>
</ns5:response>'
at net.shrine.protocol.ReadResultResponse$.envelope$1(ReadResultResponse.scala:61)
at net.shrine.protocol.ReadResultResponse$$anonfun$fromI2b2$1.apply(ReadResultResponse.scala:68)
at net.shrine.protocol.ReadResultResponse$$anonfun$fromI2b2$1.apply(ReadResultResponse.scala:68)
at net.shrine.protocol.ReadResultResponse$.unmarshal(ReadResultResponse.scala:78)
at net.shrine.protocol.ReadResultResponse$.fromI2b2(ReadResultResponse.scala:67)
at net.shrine.protocol.ReadResultResponse$.fromI2b2(ReadResultResponse.scala:42)
at net.shrine.serialization.I2b2Unmarshaller$class.fromI2b2(I2b2Unmarshaller.scala:20)
at net.shrine.protocol.ReadResultResponse$.fromI2b2(ReadResultResponse.scala:42)
at net.shrine.adapter.RunQueryAdapter$$anonfun$attemptToRetrieveBreakdowns$1$$anonfun$apply$5.ap
at net.shrine.adapter.RunQueryAdapter$$anonfun$attemptToRetrieveBreakdowns$1$$anonfun$apply$5.ap
at net.shrine.util.Try$.apply(Try.scala:139)
at net.shrine.adapter.RunQueryAdapter$$anonfun$attemptToRetrieveBreakdowns$1.apply(RunQueryAdap
at net.shrine.adapter.RunQueryAdapter$$anonfun$attemptToRetrieveBreakdowns$1.apply(RunQueryAdap
at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:233)
at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:233)
at scala.collection.LinearSeqOptimized$class.foreach(LinearSeqOptimized.scala:59)
at scala.collection.immutable.List.foreach(List.scala:76)
at scala.collection.TraversableLike$class.map(TraversableLike.scala:233)
at scala.collection.immutable.List.map(List.scala:76)
at net.shrine.adapter.RunQueryAdapter.attemptToRetrieveBreakdowns(RunQueryAdapter.scala:124)
at net.shrine.adapter.RunQueryAdapter.processRequest(RunQueryAdapter.scala:74)
at net.shrine.adapter.RunQueryAdapter.processRequest(RunQueryAdapter.scala:35)
at net.shrine.adapter.Adapter.perform(Adapter.scala:30)
at net.shrine.adapter.Adapter.perform(Adapter.scala:23)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:318)
at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInv
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.
at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:1
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
at $Proxy67.perform(Unknown Source)
at org.spin.node.actions.QueryAdapter.perform(QueryAdapter.java:128)
at org.spin.node.OnlineNodeState.performQuery(OnlineNodeState.java:765)
at org.spin.node.OnlineNodeState.doQueryAction(OnlineNodeState.java:727)
at org.spin.node.QueryOperation.doQueryAction(QueryOperation.java:81)
at org.spin.node.QueryOperation.run(QueryOperation.java:57)
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
at java.lang.Thread.run(Thread.java:662)
2012-Dec-17-15:20:00.625 ERROR [SHRINE][RunQueryAdapter][pool-1-thread-43][] Couldn't load breakdow
java.lang.Exception: Error unmarshalling an I2b2ResultEnvelope$ from '<ns5:response xmlns:ns8="http://www
xmlns:ns6="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns5="http://www.i2b2.org/xsd/hi
xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns2="http://www.i2b2.org/xsd/hive/pdo/1.1/">
<message_header>
<i2b2_version_compatible>1.1</i2b2_version_compatible>
<hl7_version_compatible>2.4</hl7_version_compatible>
<sending_application>
<application_name>edu.harvard.i2b2.crc</application_name>
<application_version>1.5</application_version>
</sending_application>
<sending_facility>
<facility_name>i2b2 Hive</facility_name>
</sending_facility>
<receiving_application>
<application_name>i2b2_QueryTool</application_name>
<application_version>0.2</application_version>
</receiving_application>
<receiving_facility>
<facility_name>i2b2 Hive</facility_name>
</receiving_facility>
<message_control_id>
<instance_num>1</instance_num>
</message_control_id>
<project_id>i2b2</project_id>
</message_header>
<response_header>
<info>Log information</info>
<result_status>
<status type="DONE">DONE</status>
<polling_url interval_ms="100"></polling_url>
</result_status>
</response_header>
<message_body>
<ns4:response xsi:type="ns4:crc_xml_result_responseType" xmlns:xsi="http://www.w3.org/2001/XMLSch
<status>
<condition type="ERROR">Query result instance id 3126 not found</condition>
</status>
</ns4:response>
</message_body>
</ns5:response>'
at net.shrine.protocol.ReadResultResponse$.envelope$1(ReadResultResponse.scala:61)
at net.shrine.protocol.ReadResultResponse$$anonfun$fromI2b2$1.apply(ReadResultResponse.scala:68)
at net.shrine.protocol.ReadResultResponse$$anonfun$fromI2b2$1.apply(ReadResultResponse.scala:68)
at net.shrine.protocol.ReadResultResponse$.unmarshal(ReadResultResponse.scala:78)
at net.shrine.protocol.ReadResultResponse$.fromI2b2(ReadResultResponse.scala:67)
at net.shrine.protocol.ReadResultResponse$.fromI2b2(ReadResultResponse.scala:42)
at net.shrine.serialization.I2b2Unmarshaller$class.fromI2b2(I2b2Unmarshaller.scala:20)
at net.shrine.protocol.ReadResultResponse$.fromI2b2(ReadResultResponse.scala:42)
at net.shrine.adapter.RunQueryAdapter$$anonfun$attemptToRetrieveBreakdowns$1$$anonfun$apply$5.ap
at net.shrine.adapter.RunQueryAdapter$$anonfun$attemptToRetrieveBreakdowns$1$$anonfun$apply$5.ap
at net.shrine.util.Try$.apply(Try.scala:139)
at net.shrine.adapter.RunQueryAdapter$$anonfun$attemptToRetrieveBreakdowns$1.apply(RunQueryAdap
at net.shrine.adapter.RunQueryAdapter$$anonfun$attemptToRetrieveBreakdowns$1.apply(RunQueryAdap
at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:233)
at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:233)
at scala.collection.LinearSeqOptimized$class.foreach(LinearSeqOptimized.scala:59)
at scala.collection.immutable.List.foreach(List.scala:76)
at scala.collection.TraversableLike$class.map(TraversableLike.scala:233)
at scala.collection.immutable.List.map(List.scala:76)
at net.shrine.adapter.RunQueryAdapter.attemptToRetrieveBreakdowns(RunQueryAdapter.scala:124)
at net.shrine.adapter.RunQueryAdapter.processRequest(RunQueryAdapter.scala:74)
at net.shrine.adapter.RunQueryAdapter.processRequest(RunQueryAdapter.scala:35)
at net.shrine.adapter.Adapter.perform(Adapter.scala:30)
at net.shrine.adapter.Adapter.perform(Adapter.scala:23)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:318)
at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInv
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.
at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:1
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
at $Proxy67.perform(Unknown Source)
at org.spin.node.actions.QueryAdapter.perform(QueryAdapter.java:128)
at org.spin.node.OnlineNodeState.performQuery(OnlineNodeState.java:765)
at org.spin.node.OnlineNodeState.doQueryAction(OnlineNodeState.java:727)
at org.spin.node.QueryOperation.doQueryAction(QueryOperation.java:81)
at org.spin.node.QueryOperation.run(QueryOperation.java:57)
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
at java.lang.Thread.run(Thread.java:662)
2012-Dec-17-15:20:00.626 ERROR [SHRINE][RunQueryAdapter][pool-1-thread-43][] Couldn't load breakdow
java.lang.Exception: Error unmarshalling an I2b2ResultEnvelope$ from '<ns5:response xmlns:ns8="http://www
xmlns:ns6="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns5="http://www.i2b2.org/xsd/hi
xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns2="http://www.i2b2.org/xsd/hive/pdo/1.1/">
<message_header>
<i2b2_version_compatible>1.1</i2b2_version_compatible>
<hl7_version_compatible>2.4</hl7_version_compatible>
<sending_application>
<application_name>edu.harvard.i2b2.crc</application_name>
<application_version>1.5</application_version>
</sending_application>
<sending_facility>
<facility_name>i2b2 Hive</facility_name>
</sending_facility>
<receiving_application>
<application_name>i2b2_QueryTool</application_name>
<application_version>0.2</application_version>
</receiving_application>
<receiving_facility>
<facility_name>i2b2 Hive</facility_name>
</receiving_facility>
<message_control_id>
<instance_num>1</instance_num>
</message_control_id>
<project_id>i2b2</project_id>
</message_header>
<response_header>
<info>Log information</info>
<result_status>
<status type="DONE">DONE</status>
<polling_url interval_ms="100"></polling_url>
</result_status>
</response_header>
<message_body>
<ns4:response xsi:type="ns4:crc_xml_result_responseType" xmlns:xsi="http://www.w3.org/2001/XMLSch
<status>
<condition type="ERROR">Query result instance id 3130 not found</condition>
</status>
</ns4:response>
</message_body>
</ns5:response>'
at net.shrine.protocol.ReadResultResponse$.envelope$1(ReadResultResponse.scala:61)
at net.shrine.protocol.ReadResultResponse$$anonfun$fromI2b2$1.apply(ReadResultResponse.scala:68)
at net.shrine.protocol.ReadResultResponse$$anonfun$fromI2b2$1.apply(ReadResultResponse.scala:68)
at net.shrine.protocol.ReadResultResponse$.unmarshal(ReadResultResponse.scala:78)
at net.shrine.protocol.ReadResultResponse$.fromI2b2(ReadResultResponse.scala:67)
at net.shrine.protocol.ReadResultResponse$.fromI2b2(ReadResultResponse.scala:42)
at net.shrine.serialization.I2b2Unmarshaller$class.fromI2b2(I2b2Unmarshaller.scala:20)
at net.shrine.protocol.ReadResultResponse$.fromI2b2(ReadResultResponse.scala:42)
at net.shrine.adapter.RunQueryAdapter$$anonfun$attemptToRetrieveBreakdowns$1$$anonfun$apply$5.ap
at net.shrine.adapter.RunQueryAdapter$$anonfun$attemptToRetrieveBreakdowns$1$$anonfun$apply$5.ap
at net.shrine.util.Try$.apply(Try.scala:139)
at net.shrine.adapter.RunQueryAdapter$$anonfun$attemptToRetrieveBreakdowns$1.apply(RunQueryAdap
at net.shrine.adapter.RunQueryAdapter$$anonfun$attemptToRetrieveBreakdowns$1.apply(RunQueryAdap
at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:233)
at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:233)
at scala.collection.LinearSeqOptimized$class.foreach(LinearSeqOptimized.scala:59)
at scala.collection.immutable.List.foreach(List.scala:76)
at scala.collection.TraversableLike$class.map(TraversableLike.scala:233)
at scala.collection.immutable.List.map(List.scala:76)
at net.shrine.adapter.RunQueryAdapter.attemptToRetrieveBreakdowns(RunQueryAdapter.scala:124)
at net.shrine.adapter.RunQueryAdapter.processRequest(RunQueryAdapter.scala:74)
at net.shrine.adapter.RunQueryAdapter.processRequest(RunQueryAdapter.scala:35)
at net.shrine.adapter.Adapter.perform(Adapter.scala:30)
at net.shrine.adapter.Adapter.perform(Adapter.scala:23)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:318)
at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInv
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.
at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:1
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
at $Proxy67.perform(Unknown Source)
at org.spin.node.actions.QueryAdapter.perform(QueryAdapter.java:128)
at org.spin.node.OnlineNodeState.performQuery(OnlineNodeState.java:765)
at org.spin.node.OnlineNodeState.doQueryAction(OnlineNodeState.java:727)
at org.spin.node.QueryOperation.doQueryAction(QueryOperation.java:81)
at org.spin.node.QueryOperation.run(QueryOperation.java:57)
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
at java.lang.Thread.run(Thread.java:662)
2012-Dec-17-15:20:00.925 DEBUG [SHRINE][ShrineService][http-6060-14][] Polling Spin for results took 131
2012-Dec-17-15:20:03.022 DEBUG [SHRINE][ShrineService][http-6060-14][] Aggregating into a net.shrine.pr
Comments
Comment by Clint Gilbert (Inactive) [ 26/Feb/14 ]
Fixed with two additions:
There's now a new enum constant - QueryResult.StatusType.Incomplete - to allow parsing the
INCOMPLETE status. There's a unit test for this using XML from the log dump here.
ErrorResponse.fromI2b2 now handles the alternate error response format from the log dump:
ns5:response \ message_body \ ns4:response \ status \ condition @type="ERROR" \ messagetext. There's a test for this using XML from the log dump. Additionally, CrCAdapter tries
falling back to unmashalling CRC responses as ErrorResponses, which will catch the alternate
format.
Generated at Wed May 10 16:00:54 EDT 2017 using JIRA 7.1.8#71012sha1:d83491778ddf5df967f3c738fa396f8b341ab597.
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