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S1_Table. Fold change in expression of 28 ISGs in cDCs after HIV-1 infection.
Gene ID
ADAR*
AIM2*
IFI6
IFI27
IFI30
IFI35
IFI44
IFI44L
IFIT1
IFIT2
IFIT3
IFITM1
IFITM2
IFITM3
IFIH1
IRF1
IRF2*
IRF3
IRF4
IRF7
ISG15
MX1
MX2
OAS1
PSME1*
SP110
SUN2
TRIM5
Median Rq
HIVneg DC
1.25
0.67
1.23
1.36
0.91
1.50
1.14
5.97
4.42
1.62
2.78
1.03
1.01
1.77
2.40
1.59
1.59
1.00
1.03
1.92
4.86
1.94
1.57
2.63
0.94
1.28
1.24
1.10
P value
0.31
1.00
0.06
0.43
0.56
0.03
0.68
0.22
0.09
0.22
0.03
0.68
0.68
0.16
0.03
0.31
0.31
1.00
0.56
0.03
0.03
0.03
0.16
0.03
0.56
0.56
0.56
0.56
Median Rq
CP DC
1.37
1.55
3.76
3.21
0.73
2.39
3.30
4.53
2.05
2.75
5.44
4.50
1.35
2.68
2.60
1.92
1.29
1.39
1.72
2.35
4.09
2.47
2.69
3.68
0.99
1.67
0.80
1.11
P value
0.09
0.22
0.06
0.03
0.22
0.06
0.06
0.06
0.15
0.16
0.06
0.16
0.31
0.06
0.06
0.15
0.31
0.43
0.03
0.09
0.06
0.06
0.11
0.06
1.00
0.06
0.40
0.69
Median Rq
EC DC
3.09
6.89
3.10
18.19
0.93
5.08
22.31
11.78
4.28
2.96
5.18
6.71
1.36
2.76
3.71
4.13
3.14
2.01
1.88
5.47
9.36
8.97
4.30
2.63
1.83
2.77
1.71
3.16
P value
0.03
0.03
0.09
0.06
1.00
0.09
0.06
0.06
0.15
0.31
0.09
0.09
0.43
0.09
0.06
0.06
0.03
0.15
0.09
0.09
0.06
0.06
0.16
0.06
0.03
0.16
0.09
0.16
* represents significant differentially expressed genes between EC and HIV negative
individuals.
1
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