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Biosequences, Proteins, and Enzymes
BRENDA – Enzyme database http://www.brenda.uni-koeln.de
45,000 enzymes from 4,100 Enzyme Classification (E.C.) numbers
See the Enzyme Structures Database for an example of the use of E.C. numbers.
http://www.ebi.ac.uk/thornton-srv/databases/enzymes
PDB – Protein Data Bank http://www.rcsb.org/pdb
45,000 Protein crystal structures and some NMR solution structures
3D Viewers and Tools
Swiss PDB Viewer – Recommended free tool and viewer.
http://www.expasy.ch/spdbv/
Cn3D – Also a free tool and viewer.
RasMol
NCBI – National Center for Biotechnology Information http://www.ncbi.nlm.nih.gov
Literature Databases
PubMed – Medline http://www.ncbi.nlm.nih.gov/PubMed/
OMIM – Online Mendelian Inheritance in Man
http://www.ncbi.nlm.nih.gov/sites/entrez?db=omim
Molecular Databases
GenBank – nucleotide sequences
Protein – protein sequences
MMDB (Molecular Modeling Database) – structures
Gene – genes
Tools
BLAST – Basic Local Alignment Search Tool
EBI – European Bioinformatics Institute http://www.ebi.ac.uk
Molecular Databases
Tools
EMBL-Bank – genomics
UniProt – nucleotide sequences
ArrayExpress – protein sequences
Ensembl – macromolecules
ExPASy: Proteomics Server http://expasy.org
Expert Protein Analysis System
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