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Transcript
Medical Image Analysis
Medical Imaging Modalities
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.

Anatomical or structural
◦ X-ray radiology, X-ray mammography, X-ray
CT, ultrasound, Magnetic Resonance Imaging

Functional or metabolic
◦ Functional MRI, (Single Photon Emission
Computed Tomography) SPECT, (Positron
Emission Tomography) PET, fluorescence
imaging
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
X-ray Imaging
Figure comes from the Wikipedia, www.wikipedia.org.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Ejected
Electron
39 P
50N
K
L
N
O
X-ray
Photon
Incident
Electron
Figure 4.1. Atomic structure of a tungsten atom. An incident electron with
energy greater than K-shell binding energy is shown interacting with a K-shell
electron for the emission of an X-ray photon.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
X-ray Imaging

Tungsten
◦ K-shell binding energy level: 69.5 keV
◦ L-shell binding energy level: 10.2 keV
◦ An emision of X-ray photon of 59.3 keV

X-ray generation
◦ Electrons are released by the source cathode
and are accelerated toward the target anode
in a vacuum under the potential difference
ranging from 20,000 to 150,000 volts
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Figure comes from the Wikipedia, www.wikipedia.org.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
X-ray 2-D Projection Imaging

Diagnostic radiology
◦ 2-D projection of the three-dimensional
anatomical structure of the human body
◦ Localized sum of attenuation coefficients of
material: air, blood, tissue, bone
◦ Film or 2-D array of detectors

Digital radiographic system
◦ Use scintillation crystals optically coupled
with photomultiplier
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
X-ray Source
3-D Object or
Patient
Anti-scatter Grid
X-ray Screen
Film
X-ray Screen
2-D Projection
Image
Figure 4.2. (a). A schematic diagram of a 2-D X-ray film-screen radiography
system. A 2-D projection image of the 3-D object is shown at the bottom. (b).
X-ray radiographic image of a normal male chest.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
X-ray 2-D Projection Imaging

Scattering
◦ Create artifacts and artificial structures

Reduce scattering
◦ Anti-scattered grids and collimators
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
X-ray Mammography

Target material
◦ Molybdenum: K-, L-, M-shell binding energies
levels are 20, 2.8, 0.5 keV. The characteristic
X-ray radiation is around 17 keV.
◦ Phodium: K-, L-, M-shell binding energies levels
are 23, 3.4, 0.6 keV. The characteristic X-ray
radiation is around 20 keV.

A small focal spot of the order of 0.1mm
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
X-ray Source
Compression
Device
Compressed
Breast
Moving
Anti-scatter Grid
X-ray Screen
Film
X-ray Screen
Figure 4.3. A film-screen X-ray mammography imaging system.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Figure 4.4. X-ray film-screen mammography image of a normal
breast.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
X-ray Computed Tomography

3-D
I out ( y; x, z )  I in ( y; x, z )e 
  ( x , y , z ) dx
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Figure comes from the Wikipedia, www.wikipedia.org.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
y
x
z
X-Y Slices
Figure 4.5. 3-D object representation as a stack of 2-D x-y slices.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
y
x
(x,y; z)
15
z
12
Iin(x; y,z)
22
42
52
62
72
82
92
Iout(x; y,z)
11
Figure 4.6. Source-Detector pair based translation method to scan a
selected 2-D slice of a 3-D object to give a projection along the y-direction.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Figure 4.7: The translate-rotate parallel-beam geometry of first generation
CT scanners.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
X-ray Computed Tomography

Generations
◦ First: an X-ray source-detector pair that was
translated in parallel-beam geometry
◦ Second: a fan-beam geometry with a
divergent X-ray source and a linear array of
detectors. Use translation to cover the
object and rotation to obtain additional views
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.

Generations
◦ Third: a fan-beam geometry with a divergent
X-ray source and an arc of detectors.
Without translation. Additional views are
obtained by simultaneous rotation of the Xray source and detector assembly. “Rotate
only”
◦ Fourth: use a detector ring around the
object. The X-ray source provides a divergent
fan-beam of radiation to cover the object
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Figure 4.8. The first generation X-ray CT scanner
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Ring of Detectors
Source
Rotation Path
Source
X-rays
Object
Figure 4.9. The fourth generation X-ray CT scanner geometry.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Figure 4.10. X-ray CT image of a selected slice of cardiac cavity of a
cadaver.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Figure 4.11. The pathological image of the selected slice shown with the Xray CT image in Figure 4.10
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Magnetic Resonance Imaging

Nuclear magnetic resonance
◦ The selected nuclei of the matter of the
object
◦ Blood flow and oxygenation
◦ Different parameters: T1 weighted, T2
weighted, Spin-density
◦ Advance: MR Spectroscopy and Functional
MRI
◦ Fast signal acquisition of the order of a
fraction of a second
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Figure comes from the Wikipedia, www.wikipedia.org.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Figure 4.12. MR images of a selected cross-section that are obtained
simultaneously using a specific imaging technique. The images show (from left
to right), respectively, the T1-weighted, T-2 weighted and the Spin-Density
property of the hydrogen protons present in the brain.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Magnetic Resonance Imaging
 1H: high
sensitivity and vast occurrence in
organic compounds
 13C: the key component of all organic
 15N: a key component of proteins and
DNA
 19F: high relative sensitivity
 31P: frequent occurrence in organic
compounds and moderate relative
sensitivity
Adapted from the Wikipedia, www.wikipedia.org.
MR Spectroscopy
Figure comes from the Wikipedia, www.wikipedia.org.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
MR Spectroscopy
Figure comes from the Wikipedia, www.wikipedia.org.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Functional MRI
Figure comes from the Wikipedia, www.wikipedia.org.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
MRI Principles
: spin-lattice relaxation time
T2 : spin-spin relaxation time
 : the spin density
 T1


Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
MRI Principles
1.
Great web sites
1. Simulations from BIGS - Lernhilfe für Physik
und Technik
2. http://www.cis.rit.edu/class/schp730/bmri/b
mri.htm
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
MRI Principles

Spin
◦ A fundamental property of nuclei with odd
atomic numbers is the possession of angular
moment

Magnetic moment
◦ The charged protons create a magnetic field
around them and thus act like tiny magnets
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
MRI Principles
: the spin angular moment
 : the magnetic moment
 : a gyromagnetic ratio, MHz/T
 J


  J

A hydrogen atom
◦

:42.58 MHz/T
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.

N
J
J
S
Figure 4.13. Left: A tiny magnet representation of a charged proton with
angular moment, J. Right: A symbolic representation of a charged proton with
angular moment, J and a magnetic moment, μ.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
MRI Principles

Precession of a spinning proton
◦ The interaction between the magnetic
moment of nuclei with the external magnetic
field
◦ Spin quantum number of a spinning proton: ½
◦ The energy level of nuclei aligning themselves
along the external magnetic field is lower than
the energy level of nuclei aligned against the
external magnetic field
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Figure 4.14 (a) A symbolic representation of a proton with precession that is
experienced by the spinning proton when it is subjected to an external
magnetic field. (b) The random orientation of protons in matter with the net
zero vector in both longitudinal and transverse directions.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
MRI Principles

Equation of motion for isolated spin



dJ  
   H 0    H 0k
dt


  J



d
   H 0 k
dt

Solution: 0   H 0
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Longitudinal Vector
OX at the transverse
position X
Net Longitudinal
Vector: Zero
Net Transverse
Vector: Zero
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
S
Lower Energy
Level
H0
Higher Energy
Level
N
Figure 4.15 (a). Nuclei aligned under thermal equilibrium in the
presence of an external magnetic field. (b). A non-zero net longitudinal
vector and a zero transverse vector provided by the nuclei precessing
in the presence of an external magnetic field.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
z
z
H0
Net Zero Transverse
Vector
Non-zero Net
Longitudinal Vector
y
x
y
x
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
MRI Principles

The precession frequency
◦ Depends on the type of nuclei with a specific
gyromagnetic ratio and the intensity of the
external magnetic field
◦ This is the frequency on which the nuclei can
receive the Radio Frequency (RF) energy to
change their states for exhibiting nuclear
magnetic resonance
◦ The excited nuclei return to the thermal
equilibrium through a process of relaxation
emitting energy at the same precession
frequency
MRI Principles

90-degree pulse
◦ Upon receiving the energy at the Larmor
frequency, the transverse vector also changes
as nuclei start to precess in phase
◦ Form a net non-zero transverse vector that
rotates in the x-y plane perpendicular to the
direction of the external magnetic field
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
S
z

y
N
x
Figure 4.16. The 90-degree pulse causing nuclei to precess in phase
with the longitudinal vector shifted clockwise by 90-degrees as a result
of the absorption of RF energy at the Larmor frequency.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
MRI Principles

180-degree pulse
◦ If enough energy is supplied, the longitudinal
vector can be completely flipped over with a
180-degree clockwise shidf in the direction
against the external magnetic field
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
S
z

y
N
x
Figure 4.17. The 180-degree pulse causing nuclei to precess in phase with
the longitudinal vector shifted clockwise by 180-degrees as a result of the
absorption of RF energy at the Larmor frequency.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
MRI Principles

Relaxation
◦ The energy emitted during the relaxation
process induces an electrical signal in a RF coil
tuned at the Larmor frequency
◦ The free induction decay of the
electromagnetic signal in the PF coil is the
basic signal that is used to create MR images
◦ The nuclear excitation forces the net
longitudinal and transverse magnetization
vectors to move
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
MRI Principles

A stationary magnetization vector
N


M   n
n 1

The total response of the spin system




0
  M x i  M y j ( M z  M z )k
dM
 M H 

dt
T2
T1
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
RF Pulse
In Phase Spin
Relaxation
Random Phase
(Zero Transverse Vector)
Dephasing
Figure 4.18. The transverse relaxation process of spinning nuclei.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
MRI Principles

The longitudinal and transverse
magnetization vectors with respect to the
relaxation times
M x, y (t )  M x, y (0)et / T2 ei0t
M z (t )  M z0 (1  e t / T1 )  M z (0)e t / T1

where
M x, y (0)  M x ', y ' (0)e
 i0 p
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Mx,y (t)
t
Mz (t)
t
Figure 4.19. (a) Transverse and (b) longitudinal magnetization relaxation
after the RF pulse.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
MRI Principles
The RF pulse causes nuclear excitation
changing the longitudinal and transverse
magnetization vectors
 After the RF pulse is turned off, the
excited nuclei go through the relaxation
phase emitting the absorbed energy at
the same Larmor frequency that can be
detected as an electrical signal, called the
Free Induction Decay (FID)

Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
MRI Principles

The NMR spin-echo signal (FID signal)

 i (  x x  y y  z z )
S ( x ,  y ,  z )  M 0   ( x, y, z )e
dxdydz

i (  x x  y y   z z )
 ( x, y, z )  M 0  S ( x ,  y ,  z )e
d x d y d z
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
MR Instrumentation

The stationary external magnetic field
◦ Provided by a large superconducting magnet
with a typical strength of 0.5 T to 1.5 T
◦ Housing of gradient coils
◦ Good field homogeneity, typically on the
order of 10-50 parts per million
◦ A set of shim coils to compensate for the
field inhomogeneity
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Gradient
Coils
Gradient
Coils
RF
Coils
Magnet
Patient
Platform
Monitor
Data-Acquisition
System
Figure 4.20. A general schematic diagram of a MR imaging system.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Figure comes from the Wikipedia, www.wikipedia.org.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Figure comes from the Wikipedia, www.wikipedia.org.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
MR Instrumentation

An RF coil
◦ To transmit time-varying RF pulses
◦ To receive the radio frequency emissions
during the nuclear relaxation phase
◦ Free Induction Decay (FID) in the RF coil
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
MR Pulse Sequences

NMR signal
◦ The frequency and the phase

Spatial encoding in MR imaging
◦ Frequency encoding and phase encoding
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Sagital
y
z
y
Axial
y
z
x
x
Coronal
x
z
Figure 4.21 (a). Three-dimensional object coordinate system with axial,
sagittal and coronal image views. (b): From top left to bottom right:
Axial, coronal and sagittal MR images of a human brain.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
MR Pulse Sequences
Z Gradient
X Gradient
Z Gradient
Y Gradient
90 RF Pulse
(Slice Selection)
Phase-Encoding
(x-scan selection)
180 RF Pulse
(Slice Echo Formation)
Frequency Encoding
(Read-Out Pulse)
Figure 4.22. (a): Three-dimensional spatial encoding for spin-echo MR
pulse sequence. (b): A linear gradient field for frequency encoding. (c). A
step function based gradient field for phase encoding.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
S
External Magnet
Linear Gradient
Varying Spatially Dependent
Larmor Frequency

Precessing Nuclei
N
Phase Encoding
Gradient
Step
Positive
Phase
Change
Negative
Phase
Change
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
MR Pulse Sequences

The phase-encoding gradient
◦ Applied in steps with repeated cycles
◦ If 256 steps are to be applied in the phaseencoding gradient, the readout cycle is
repeated 256 times, each time with a specific
amount of phase-encoding gradient
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Spin Echo Imaging
 TE
:
◦ Between the application of the 90 degree
pulse and the formation of echo (rephasing of
nuclei
 TE / 2
:
◦ Between the 90 degree pulse and 180 degree
pulse
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
RF Energy: 90 Deg Pulse
Relaxation
Dephasing
Zero Net Vector:
Random Phase
In Phase
In Phase
Rephasing
RF Energy: 180 Deg Pulse
Echo -Formation
Figure 4.23. The transverse relaxation and echo formation of the spin
echo MR pulse sequence.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Spin Echo Imaging

K-space
◦ The placement of raw frequency data
collected through the pulse sequences in a
multi-dimensional space
◦ By taking the inverse Fourier transform of the
k-space data, an image about the object can
be reconstructed in the spatial domain
◦ The NMR signals collected as frequencyencoded echoes can be placed as horizontal
lines in the corresponding 2-D k-space
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Figure comes from the Wikipedia, www.wikipedia.org.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Spin Echo Imaging
: the cycle repetition time
T2 weighted
 TR

◦ A long TR and a long TE
 T1
weighted
◦ A short TR and a short TE

Spin-density
◦ A long TR and a short TE
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
TE /2
180 deg
RF pulse
90 deg
RF pulse
RF pulse
Transmitter
Gz: Slice Selection
Frequency Encoding
Gradient
TE /2
Gx: Phase Encoding
Gradient
Gy: Readout
Frequency Encoding
Gradient
TE
NMR
RF FID
Signal
Figure 4.24. A spin echo pulse sequence for MR imaging.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Spin Echo Imaging
T
 R 
  TTE 
T1 
2
 ( x, y, z )   0 ( x, y, z )e 1  e 




The effective transverse relaxation time
from the field inhomogeneities
1
1  H
 
*
T2 T2
2
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Spin Echo Imaging

The effective transverse relaxation time
from a spatial encoding gradient
1
1  Gd
 *
**
T2
T2
2
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Echo Planar Imaging
A single-shot fast-scanning method
 Spiral Echo Planar Imaging (SEPI)

1 d
Gx (t ) 
 x (t )
 dt
1 d
G y (t ) 
 y (t )
 dt
◦ where
x (t )  t cos t
 y (t )  t sin t
90 deg
RF pulse
90 deg
RF pulse
RF pulse
Transmitter
Gz: Slice Selection
Frequency Encoding
Gradient

2
2
2
2
Gx: Oscillating
Gradient
2
2
2
2
Gy: Readout
Gradient
NMR
RF FID
Signal
Figure 4.25. A single shot EPI pulse sequence.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
y
gy 2
x
gx
Figure 4.26. The k-space representation of the EPI scan trajectory.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
y
SEPI
Trajectory
Data
Sampling
Points
x
Figure 4.27. The spiral scan trajectory of SEPI pulse sequence in the
k-space.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
TE /2
180 deg
RF pulse
90 deg
RF pulse
RF pulse
Transmitter
Gz: Slice Selection
Frequency Encoding
Gradient
TE /2
Gx Gradient
Gy Gradient
TE
NMR
RF FID
Signal
TD
Figure 4.28. The SEPI pulse sequence
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Figure 4.29. MR images of a human brain acquired
through SEPI pulse sequence.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Gradient Echo Imaging

Fast low angle shot (FLASH) imaging
◦ Utilize low-flip angle RF pulses to create
multiple echoes in repeated cycles to collect
the data required for image reconstruction
◦ A low-flip angle (as low as 20 degrees)
◦ The readout gradient is inverted to re-phase
nuclei leading to the gradient echo during the
data acquisition
◦ The entire pulse sequence time is much
shorter than the spin echo pulse sequence
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Low Flip Angle
RF pulse
RF pulse
Transmitter
Gz: Slice Selection
Frequency Encoding
Gradient
Gx: Phase Encoding
Gradient
Gy: Readout
Frequency Encoding
Gradient
TE
NMR
RF FID
Signal
Figure 4.30. The FLASH pulse sequence for fast MR imaging.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Flow Imaging

Tracking flow
◦ Diffusion (incoherent flow) and perfusion
(partially coherent flow)
◦ The FID signal generated in the RF receiver
coil by the moving nuclei and velocitydependent factors

MR angiography
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
TE /2
180 deg
(selective)
RF pulse
90 deg
RF pulse
RF pulse
Transmitter
Gz: Slice Selection
Frequency Encoding
Gradient
Gx: Phase Encoding
Gradient
Gy: Readout
Frequency Encoding
Gradient
TE
NMR
RF FID
Signal
Figure 4.31. A flow imaging pulse sequence with spin echo.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Figure 4.32: Left: A proton density image of a human brain.
Right: The corresponding perfusion image.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Next 90 degree
RF pulse
90 degree
RF pulse
RF pulse
Transmitter
Gz: Slice Selection
Frequency Encoding
Gradient
Gx: Phase Encoding
Gradient
Gy: Readout
Frequency Encoding
Gradient
TE
NMR
RF FID
Signal
TR
Figure 4.33. Gradient echo based MR pulse sequence for 3-D MR
volume angiography.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Figure 4.34. An MR angiography image.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Nuclear Medicine Imaging
Modalities

Radioactivity decay
N (t )  N (0)e

 t
Half-life of a radionuclide decay
Thalf 
0.693

Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Nuclear Medicine Imaging
Modalities

The radioactivity of a radionuclide
◦ The average decay rate
dN

 N
dt
◦ Curie (CI)
 3.7 1010 disintegrations per second (dps)
◦ Becquerel (Bq)
 One dps
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Single Photon Emission Computed
Tomography

Radioisotope
◦ The radioisotopes are injected in the body
through administration of
radiopharmaceutical drugs that metabolize
with the tissue

Gamma rays
◦ The gamma rays from the tissue pass through
the body and are captured by the detectors
surrounding the body to acquire raw data for
defining projections
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Figure comes from the Wikipedia, www.wikipedia.org.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Single Photon Emission Computed
Tomography

Radionuclides
◦
◦
◦
◦

Thallium
Technetium
Iodine
Gallium
Gamma ray
◦ Decay by emitting gamma rays with photon
energy ranging from 135 keV to 511 keV

Attenuation
I d  I 0 e  x
Object Emitting
Gamma Photons
Scintillation
Detector Arrays Coupled with
Photomultiplier Tubes
Figure 4.35. A schematic diagram of detector arrays of SPECT
scanner surrounding the patient area.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Single Photon Emission Computed
Tomography

Scintillation detector
◦ Barium fluoride
◦ Cesium iodide
◦ Bismuth germinate BGO

Photomultiplier tube
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Figure 4.36. A 99Tc SPECT image of a human brain
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Single Photon Emission Computed
Tomography

Attenuation and scattering
◦ Photoelectric absorption and Compton
scattering

Poor in structural information
◦ Attenuation and scattering
Assessment of metastases or
characterization of a tumor
 Lower cost than PET

Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Positron Emission Tomography

Concept
◦ Simultaneous detection of two 511keV energy
photons traveling in the opposite direction

Radionuclides
◦ Decay by emitting positive charged particles
called positrons
◦ Fluorine 18-F
◦ Oxygen 15-O
◦ Nitrogen 13-N
◦ Carbon 11-C
Detector
Ring
Point of Positron
Emission
Object Emitting
Positrons
Coincidence
Detection
System
Computer
Point of Positron
Annihilation
Display
Scintillation
Detector Arrays
Position Dependent
Photomultiplier Tubes
Figure 4.37. A schemtaic diaggram of PET scanner.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Figure comes from the Wikipedia, www.wikipedia.org.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Positron Emission Tomography

After emission
◦ Travel typically for 1-3 mm, losing some of its
kinetic energy
◦ The annihilation of the positron with the
electron
◦ Cause the formation of two gamma photons
with 511keV traveling in opposite directions
◦ Coincidence detection
◦ The point of emission of a positron is
different from the point of annihilation with
an electron
Positron Emission Tomography

Radiopharmaceutical
◦ Fluorodeoxyglucose (FDG)
◦ Resolution and sensitivity of PET imaging is
significantly better than SPECT
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Figure 4.38: Serial images of a human brain with FDG PET imaging.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Ultrasound Imaging

Diagnostic imaging
◦ Anatomical structures, blood flow
measurements and tissue characterization
◦ Safety, portability, low-cost
Figure comes from the Wikipedia, www.wikipedia.org.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Figure comes from the Wikipedia, www.wikipedia.org.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Ultrasound Imaging

Velocity
c  

Relative intensity in dB
10 log 10

I1
I2
Shorter waves
◦ Better imaging resolution

Frequencies: 2 MHz to 5 MHz are
common
Reflection and Transmission

Acoustic impedance
Z0   c
R1, 2
Z 2  Z1

Z1  Z 2
2Z 2
T1, 2 
Z1  Z 2
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Z1
Z3
Z2
Z4
Z5
I0
T1,2
T2,3
T3,4
T5,4
T4,3
T3,2
T2,1
R0
x1
x2
x3
Figure 4.39. A path of a reflected sound wave in a multilayered
structure.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Refraction

Snell’s law
c2
sin  t  sin  i
c1
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Pulse
Generation and
Timing
Acoustic absorbers
Blockers
Transmitter/
Receiver
Circuit
Control
Circuit
Piezoelectric crystal
Imaging
Object
DataAcquisition
Analog to
Digital
Converter
Computer
Imaging Storage
and Processing
Display
Figure 4.40. A schematic diagram of a conventional ultrasound
imaging system.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Figure comes from the Wikipedia, www.wikipedia.org.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Ultrasound Imaging

A-mode
◦ Records the amplitude of returning echoes
from the tissue boundaries with respect to
time
◦ Perpendicular incident angle
◦ Basic method
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Ultrasound Imaging

M-mode
◦ Variations in signal amplitude due to object
motion
◦ X-axis represents the time, while the y-axis
indicates the distance of the echo from the
transducer
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Figure 4.41. M-Mode display of mitral valve leaflet of a beating heart.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Ultrasound Imaging

B-mode
◦ Two-dimensional images representing the
changes in acoustic impedance of the tissue
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Figure 4.42. The “B-Mode” image of a beating heart with mitral stenosis.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Ultrasound Imaging

Doppler ultrasound imaging
2 cos  f
f doppler 
c
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.
Figure 4.43. A Doppler image of the mitral valve area of a beating heart.
Figures 4.4.3-5 are taken from the website
http://www2.umdnj.edu/~shindler/ms.html.
Figures come from the textbook: Medical Image Analysis, by Atam P.
Dhawan, IEEE Press, 2003.