Download Genetic Screening: Carriers and Affected Individuals

Genetic Screening: Carriers and Affected Individuals
Linda L. McCabe1,2 and Edward R.B. McCabe1,2,3
1
Departments of Human Genetics and Pediatrics, David Geffen School of Medicine at
UCLA
2
UCLA Center for Society, the Individual and Genetics
3
Mattel Children’s Hospital at UCLA
Linda L. McCabe, Ph.D.
Department of Human Genetics
David Geffen School of Medicine at UCLA
695 Charles Young Drive South, 4506 Gonda
Los Angeles, California 90095
[email protected]
Edward R.B. McCabe, M.D., Ph.D.
Department of Pediatrics
David Geffen School of Medicine at UCLA
10833 Le Conte Ave., 22-412 MDCC
Los Angeles, California 90095-1752
[email protected]
Key words: genetic screening; technology; newborn screening; carrier; affected
Proofs should be sent to:
Edward R.B. McCabe, M.D., Ph.D.
Department of Pediatrics
David Geffen School of Medicine at UCLA
10833 Le Conte Ave., 22-412 MDCC
Los Angeles, California 90095-1752
Telephone: 310-825-5095
Fax: 310-206-4584
[email protected]
ABSTRACT
Genetic screening utilizes analytical approaches adapted for high throughput to
identify carrier and affected individuals in a targeted population. Genetic screening is
focused currently on carrier screening, prenatal screening, and newborn screening.
Newborn screening should serve as a model for all genetic screening, with more than
forty years of experience and numerous lessons learned. Just as in all of genetic
screening, there are policy concerns in newborn screening regarding which disorders and
technologies should be selected, and how centralized or decentralized should be the
process to set policy. The need to share experiences and develop databases transcends all
of genetic screening. The future will see population-based screening for adult onset
disorders. However, there will need to be extensive research to define predictive risk for
various ethno-cultural groups and to determine effective interventions. Ethical concerns
regarding the timing of population screening will need to be resolved if genomic
medicine will achieve its promise of a predictive, preventive, and personalized medicine.
Genetic screening involves identification of individuals affected with a disease, at
risk for developing disease, or at risk for having a child affected with a disease. It
involves a population-based approach, and populations are selected with specific goals
and strategies in mind. Because testing of entire populations is involved, the analytical
methodologies used in genetic screening are adapted for high throughput, maximum
efficiency, and lowest cost. Decisions regarding test selection must be consistent with
optimized ascertainment of true positives, while keeping false negatives to absolute
lowest possible frequency, and minimizing false positives (41, 50)
Currently genetic screening in the United States involves carrier screening within
selected populations, prenatal screening of women who receive prenatal care and are
willing to participate, and newborn screening for nearly all newborns. In the future,
genetic screening will move the practice of medicine from acute responses at the time of
a medical emergency, to a public health, predictive strategy. In the era of predictive
medicine, entire populations, or targeted groups, will be screened for common disorders,
(e.g. cancer, diabetes, heart disease), using genetic tests. The goal will be to prevent
these disorders in those at risk, through the use of diet, exercise, or medication, and to
ensure increased monitoring of those at risk (25).
If genetic screening for disease is successful, then it will identify individuals with
a disease, or at risk for disease, before the onset of symptoms, and at a time that
interventions will be effective. Screening intended to identify unaffected carriers has the
goal of providing information to individuals so that they will understand their
reproductive options. Carrier screening, however, may be a by-product of disease
screening, e.g., heterozygotes in the course of hemoglobinopathy. In that case, the
carriers may be ascertained without specifically requesting this information, and at a time
and/or under circumstances when knowledge of, interest in, or access to genetic
counseling is low.
Newborn screening serves as a model for all of genetic screening (25, 37).
Newborn screening identifies affected individuals and carriers. Since an individual’s
carrier status will not be useful to them until they reach reproductive age, concern has
been raised about the maintenance and fidelity of the carrier information, so that it will be
available and accurate for reproductive decision-making.
History of Newborn Screening
Newborn screening was developed as a “low tech” enterprise, and its origins
demonstrate that a single individual, Robert Guthrie, M.D., Ph.D., can make a difference
(26). Guthrie was an investigator who utilized a bacterial inhibition assay for the
measurement of amino acid concentrations. This methodology, the bacterial inhibition
assay (BIA), involved measuring the growth zone of bacteria around a paper disc,
containing the amino acid of interest. The size of the growth zone was proportional to
the concentration of the analyte, and the BIA was “turned” to the concentrations
anticipated in the sample by use of an inhibitor that competed with the natural analyte
and could not be used by the bacteria to support growth and cell division. He showed
that phenylalanine in a dried blood spot could be measured by the BIA (21).
Motivated by a son with mental retardation and a niece with phenylketonuria
(PKU), Guthrie organized parents in state Associations for Retarded Citizens (ARCs), in
the 1960s, to lobby their state legislators to establish newborn screening for PKU. The
goal was to prevent mental retardation in children with PKU by initiation of a special diet
that was restricted in phenylalanine.
In addition to developing the BIA to screen for hyperphenylaninemia and other
amino acidopathies, Guthrie also recognized the value of dried blood specimens, now
known as “Guthrie cards”, for transport of samples from the birthing hospital to a
centralized newborn screening laboratory. When testing for a rare disorder like PKU,
(estimated frequency at that time of 1/10,000 – 1/12,000 live births), the average hospital
would only identify an affected patient once over several years or longer. A centralized,
dedicated laboratory would have more experience, better quality assurance, and this
would decrease the risk of false negatives.
Newborn screening dried blood specimens have a number of additional
advantages. Once the blood is dry, the analytes (small molecules, proteins and DNA) are
stable. They are easily transported and stored. Most pathogens are killed when dry. The
drawbacks to this form of sample are the specialized equipment required for sample
handling and the systems required for storage and retrieval. However, dried blood
samples will continue to be used since newborn screening systems find them so easy to
work with. Because DNA and protein are stable in these specimens, the states’ collection
of newborn screening blood blotters represent a biobank. The fact that few states have
laws governing the use and disposition of newborn screening samples is concerning (29).
With the addition of new disorders came new newborn screening technologies.
Technologies currently used for newborn screening, in addition to the Guthrie test (BIA),
include: enzyme assays; immunoassays (RIAs and EIAs); electrophoresis; high
performance liquid chromatography (HPLC); tandem mass spectrometry (MS/MS); and
DNA confirmatory testing. The addition of the newer methodologies shows that the
formerly low-tech enterprise of newborn screening is moving into the high tech world.
Tandem Mass Spectrometry (MS/MS)
The addition of MS/MS to newborn screening has greatly increased the number of
disorders tested (8, 43). Mass spectrometry involves ionization and adsorption of excess
energy by individual molecules, resulting in fragmentation (dissociation), and then mass
analysis. MS/MS provides serial fragmentation that with computerized analysis permits
identification of signature metabolites for individual inborn errors of metabolism.
MS/MS is used to screen for amino acid disorders including PKU, hypertyrosinemia,
Maple Syrup Urine Disease (MSUD), homocystinemia, hyperargininemia, citrullinemia,
and argininosuccinic acidemia. Organic acid disorders such as methylmalonic acidemia,
propionic acidemia, isovaleric acidemia, and the glutaric acidemias are also detected.
MS/MS can also screen for fatty acid oxidation disorders like medium chain acyl CoA
dehydrogenase deficiency (MCAD). MS/MS has the potential for expanded applications
in screening for steroids, such as cholesterol and steroid precursors, hormones, purines
and pyrimidines, fatty acids, and toxins.
Wilcken et al. (56) compared rate of detection of amino acid, organic acid, and
fatty acid oxidation disorders, before (1974-1998) and after (1998-2002) the introduction
of MS/MS to the newborn screening program in New South Wales, Australia. MS/MS
increased the rate of detection for MCAD and other fatty acid oxidation disorders. The
costs of tandem mass spectrometry were $.70/newborn, $217/ confirmed diagnosis, and
$2,519/ case detected.
The experience with MS/MS in Germany was described by Schulze et al. (49).
They screened 250,000 newborns for 23 disorders using MS/MS. The false positive rate
was 0.33%. They found 106 true positives after confirmatory tests. MS/MS screening
benefited 61 of the 106 true positives and increased the detection rate by two-fold.
Chace et al. (8) investigated 793 deaths of children under the age of three, in
Virginia, in a study carried out in collaboration with the state’s medical examiners.
Eight, or one percent, had an inborn error of metabolism diagnosed by MS/MS, using
dried blood specimens obtained postmortem. Four had fatty acid oxidation disorders
(two were MCAD) and four had organic acid disorders. While one of these eight
children died on the second day of life, the authors conducted that the other seven would
have benefited from newborn screening with MS/MS.
In a similar study, Wilcox and et al. (57) tested newborn blood spots from Oregon
infants who experienced sudden unexpected death for fatty acid oxidation disorders,
using MS/MS. One percent of the infants had fatty acid oxidation disorders: two had
MCAD and one had VLCAD.
Schoen et al. (48) performed a cost-benefit analysis of MS/MS newborn screening
at Kaiser in Northern California. The cost was $5,827 per quality-adjusted life year
saved by MS/MS screening. The authors concluded that this compared favorably with
screening for adult disorders such as breast cancer and prostate cancer.
Insinga et al. (23) analyzed cost effectiveness of MS/MS in the Wisconsin
newborn screening program. They found a cost of $6,008 per quality adjusted life year
saved by testing for 14 fatty acid oxidation and organic acid disorders. This technology
remained cost-effective if the cost to add the tests was less than $13.05 per test.
From this research we conclude that ascertainment of infants with inherited
metabolic disorders increases with MS/MS. Without MS/MS these affected infants
would die, many without an antemortem diagnosis. MS/MS is cost-effective. Newborn
screening is more than the test, but rather a system including, for example: in the
preanalytic phase, education, sample procurement, and transport; in the analytic phase,
accessioning, testing, and result posting; and in post-analytic phase, result distribution,
diagnostic confirmation, therapeutic intervention, genetic counseling, long-term followup, and programmatic quality assurance (44). Organized, protocol-driven, long-term
follow-up of affected infants is required (32).
DNA Confirmatory Testing
McCabe et al (34) found that DNA could be extracted from the dried blood spot
on a newborn screening blotter for Southern blot analysis. This led to the military “DNA
dog tag” for identification and specimen collection for criminal forensics. It also made
possible 2nd tier DNA follow-up and confirmation from the original newborn screening
specimen and the possibility of primary DNA screening for specific mutations.
Applying the polymerase chain reaction (PCR) to DNA from newborn screening
blood blotters, Jinks et al. (24) demonstrated the feasibility of molecular genetic
diagnosis of sickle cell disease. They argued that this methodology would decrease
follow-up costs, because the original blotter could be used, and that more timely
information could be provided because the persistence of fetal hemoglobin that
complicated the electrophoretic analysis was not an issue for DNA diagnosis. Rubin et
al. (47) showed that the DNA in the newborn screening sample was stable for up to one
year, facilitating DNA analysis for sickle cell disease. Williams et al. (58), showed DNA
stability in a newborn screening specimen for more than 15 years. Methods were
improved to decrease time and cost of DNA follow-up (33).
Descartes (13) demonstrated the feasibility of using DNA follow-up as part of a
newborn screening program. Zhang and McCabe (60) showed that RNA could be
extracted from the dried blood blotter, enabling diagnosis of other hemoglobinopathies,
such as the β-thalassemias. Zhang et al. (61) showed that DNA follow-up halved the age
at confirmed diagnosis, reducing the age from four months to two months. At the time, it
was recommended that infants with sickle cell disease begin penicillin prophylaxis by
four months of age to prevent the morbidity and mortality associated with infection (14).
The cost of the DNA follow-up testing for hemoglobinopathies was estimated to be $10 –
25 per newborn (61), though another group carrying out second tier DNA testing for CF
estimated their costs to be lower, at $2-3 (17).
Use of DNA follow-up provides information regarding carrier status in addition to
identifying the affected infants. If an infant is a carrier, one or both parents must be
carriers. This information is immediately useful to the parents if they did not know about
their own carrier status. Preserving this information regarding a newborn and providing
it at the appropriate time for reproductive decision-making can be a concern.
DNA testing has been used for newborn screening confirmation for a number of
disorders including the hemoglobinopathies, cystic fibrosis, MCAD deficiency, and
congenital adrenal hypoplasia (37).
A variety of molecular genetic technologies are being used for neonatal
hemoglobinopathy screening (5). These include restriction enzyme analysis, dot blot
with allele specific oligonucleotide (ASO) hybridization, reverse dot blot, amplification
refractory mutation system (ARMS), gap-PCR, SSCP and heteroduplex analysis,
denaturing gradient gel electrophoresis (DGGE), automated sequencing, real-time PCR,
and oligonucleotide microarray analysis.
Need for Standardization of the Tests and Technologies of Newborn Screening
According to the Government Accounting Office (16) all states screening for
PKU and congenital hypothyroidism. Beyond these two tests, there is not programmatic
uniformity. States test for four to 36 disorders. Most states screen for eight or fewer
disorders.
The Newborn Screening Task Force Report (44) called for a national agenda for
state newborn screening programs regarding the disorders screened and the technologies
utilized. The report emphasized that newborn screening is a system of care, not simply
the analytical phase.
There is a need to modernize the methodologies for newborn screening. There
should be one platform, or at least a limited number of platforms, for analytes. The
technology should be transparent to the user and the cost should be low. Nanotechnology
will provide possible platforms, with microfluidic sample preparation and chip-based
analyses, including amperometric measurements of DNA, proteins, and metabolites (15),
and MS, MS/MS and MALDI-TOF on a chip (55).
In addition to standardization of technologies, new screening programs should
borrow from the successful newborn screening programs. When newborn hearing
screening was developed during the 1990s, it developed independently in many hospitals
and states, from established newborn screening programs (38). Newborn hearing
screening is hospital-based, while newborn screening programs are centralized through
the state newborn screening program. Hospitals do not have experience with follow-up
for an initial positive hearing screen. There is a lack of audiologists trained in newborn
hearing testing and diagnosis. Association of newborn hearing screening with the longstanding state newborn screening programs would provide needed infrastructure for
diagnostic follow-up testing. Software programs, including digital data communications
protocols, exist that would permit centralized quality assurance of hospital-based hearing
screening. In addition, linkage of hearing screening to state heelstick screening programs
would also enable a link between the hearing test and the newborn screening blood
blotter that would facilitate DNA testing for a major cause of hearing loss, connexin-26
mutations. Mutations in the connexin-26 gene occur in 3% of the population and are
responsible for 40% of all cases of childhood hearing loss (9). A single mutation is
responsible for most of these cases in a mixed U.S. population (9), though, for example,
among Ashkenazi Jews, a different mutation predominates (40). Additional mutations
need to be assessed in either population in order to assure access to this technology by all
populations (10, 11, 30). Hearing screening followed by DNA testing of the newborn
screening blotter could prove to be more rapid and cost-effective than hearing screening
followed by diagnostic audiometry, but requires linkage of these programs that in many
states operate completely independently.
Newborn Screening is the Model for Genomic Medicine
Genomic medicine promises a medical paradigm that will be proactive, rather
than reactive, and will provide care that is predictive, preventive, and personalized.
Newborn screening has been guided by these principles from its beginning and is the
laboratory for genomic medicine. We must move newborn screening into the modern era
technologically, with expansion of MS/MS and other MS-related capabilities, and
incorporation of nanotechnology solutions to sample preparation and analyses.
To extend genetic screening beyond the newborn period will require careful
development of programs, in addition to technologies. Mitchell et al. (39) described a
long-standing program in Montreal that provided targeted screening of carrier status for
Tay-Sachs disease and beta-thalassemias among high school students. As part of their
biology coursework, students learned about these two disorders. They were offered
carrier testing, and retained and used the information in their reproductive decisionmaking. High school, like the newborn period provides an opportunity to offer screening
programs to a broad segment, if not 100% of the population. In the United States we
would need to change our approach to age at independence for health care decisionmaking in order for screening to be effective in high schools (36). We would also need to
reinforce legislative protections against the possibility of genetic discrimination. The
American Academy of Pediatrics (AAP) Committee on Bioethics (1) argued against
carrier testing in individuals under 18 years of age, unless pregnant or planning a
pregnancy. They also opposed to predictive screening for adult-onset disorders before 18
years of age. The AAP Committee on Genetics (3) stated that those under 18 years of
age should have molecular genetic testing if they would receive immediate medical
benefits, or if another family member would benefit and there would be no harm to the
person being tested. This AAP committee also stressed the importance of genetic
counseling before and after the test.
Population-Based Screening Beyond the Newborn Period
Hereditary hemochromatosis can be improved with phlebotomy (59). However, a
Center for Disease Control-National Human Genome Research Institute Expert Panel (6)
concluded that DNA testing should not be used to screen for hereditary
hemochromatosis. The Panel was concerned that there was a need to obtain more data on
prevalence and penetrance of the mutations, and to evaluate the benefits of treatment for
those with mutations. The Panel raised the possibility of genetic discrimination against
those with mutations. A recent study (4) showed a very low penetrance. Only one of 152
individuals, who was homozygous for the mutation with the highest risk of hereditary
hemochromatosis, showed any symptoms.
A mutation that leads to Factor V Leiden, results in thrombophilia, i.e., an
increased tendency to form blood clots. Vandenbroucke et al. (52) found that the Factor
V Leiden mutation led to a seven-fold increase in the risk of venous thrombosis. They
observed that the use of oral contraceptives led to a four-fold increased risk; however,
women with the mutation, taking oral contraceptives, had their risk increased 30-fold.
Since the absolute risk of venous thrombosis is low (28/10,000 person years),
Vandenbroucke et al. (53) concluded that 500,000 women would need to be screened for
Factor V Leiden, and tens of thousands would be denied oral contraceptives to prevent a
single death. The American College of Medical Genetics found that there was no
consensus on screening women before prescribing oral contraceptives (20). They did not
recommend Factor V Leiden screening for healthy women planning to use oral
contraceptives.
A National Institutes of Health Consensus Development Conference on cystic
fibrosis screening (42) recommended that the following individuals undergo mutation
screening for cystic fibrosis: adult family members of patients with cystic fibrosis;
partners of patients with cystic fibrosis; couples planning a pregnancy; and couples
seeking prenatal care. With more than 900 mutations reported (19), a decision needed to
be made whether to screen for all identified mutations or to screen for the most prevalent
mutations. In either case, some cystic fibrosis carriers would be missed. An American
College of Medical Genetics/American College of Obstetricians and
Gynecologists/National Institutes of Health committee made recommendations for carrier
screening for cystic fibrosis (18). The committee recommended screening for 25
mutations, selecting the recommended mutations as those that had a frequency of 0.1%.
Members of ethnocultural groups should be told of the limitations of this test to detect
carriers in their groups (e.g., African-Americans and Latinos) or of the low frequency of
cystic fibrosis in their group (e.g., Asians and Native Americans). Mutations in the
cystic fibrosis gene may be associated with phenotypes distinct from the classical
pulmonary and nutritional manifestations, including azoospermia in men (31) and chronic
sinusitis (45, 54).
Prevention is one goal of screening for adult onset disorders such as Type 2
diabetes mellitus (46). One form of Type 2 diabetes is maturity onset diabetes of the
young (MODY) (27). A diagnosis of MODY relies on three generations with autosomal
dominant diabetes and two patients with onset 25 years of age. Lehto et al. (28)
screened family members of Scandinavian patients with MODY for four genes. Thirteen
percent had a mutation in one of these genes. If this screening could be performed before
adolescence, there would be the opportunity to prevent the obesity associated with
MODY through diet and exercise.
Many of the interventions for disorders, like diabetes mellitus, obesity, heart
disease, and even some forms of cancer, will involve lifestyle changes (32). These will
included exercise and diet, and will involve changes in patterns of behavior throughout
the individual’s life. This will represent a significant therapeutic challenge to successful
screening programs for adult-onset disorders. Just as newborn screening is a system in
which the screening test will be only one small part, so too will screening programs for
later onset disorders be systems, and not simply the tests.
Summary and Conclusions
Informed population screening applies technology for the benefit of populations
and the individuals composing those populations, and avoids health care disparities (37).
There must be adequate information for each ethno-cultural group regarding mutation
frequency and penetrance. In the absence of such information, there cannot be effective
genetic counseling concerning the clinical utility of the test results. To avoid health care
disparities, screening should be offered at a reasonable price or as part of a free public
health program (51).
The public needs to be educated regarding the risks and benefits of population
screening (37). An understanding of the difference between carrier status and diagnosis
as an affected individual must be a goal in preparing the public adequately for screening.
Members of the public and health care professionals must be offered the opportunity to
be educated regarding the predictive nature of genetic information, since that is so
different from the usual absolute positive or negative result from a medical test. They
should understand that the storage of their screening samples represents a DNA database
(37). Since information in genetics and genomics is continuing to undergo development,
participants in screening programs should be assured that they will receive information in
the future, regarding unexpected disease associations related to the condition for which
they are screened. The public should understand that a guiding principle of screening is
that the participants benefit from presymptomatic testing. Members of the public should
be actively involved in establishing screening policy (44).
Health care providers also need education regarding genetic screening. They need
to understand that screening programs will miss carriers and affected individuals (2). A
negative screening result should never outweigh clinical acumen. If an individual has
symptoms of a disorder, they should receive a diagnostic test. Screening test results are
not infallible due to biologic, clerical and laboratory errors (12, 22, 35).
Successful genetic screening to identify carriers and affected individuals will
require reliance on principles derived from the most frequent genetic testing to date – the
screening of the 4 million newborns each year in the U.S. and even more around the
world. Extensive research will be required to determine the penetrance of mutations and
the relative risks to different ethnocultural groups. The age of participants and the venue
of the screening will have to be considered to ensure that screening is cost-effective and
available to as many members of the target group as possible. Finally, research to
determine effective prevention strategies, treatments, and/or effective focused screening
for those at risk will be required to justify genetic screening.
Disclosure: One of the authors (ERB McCabe) is an advisor to the nanotechnology
company, GeneFluidics.
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