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Anna Yershova Curriculum Vitae Post-Doctoral Research Associate Department of Computer Science Duke University Durham, NC 27707, USA Office: Phone: Email: URL: LSRC D224 1-919-660-6553 [email protected] www.cs.duke.edu/∼yershova Research Interests Geometric problems arising in conformational spaces of molecules and configuration spaces in robotics, NMR structural biology, motion planning, robotics. Education Ph.D. Aug 2003 - Aug 2008 Department of Computer Science, University of Illinois, USA Dissertation: Sampling and Searching Methods for Practical Motion Planning Algorithms Research advisor: Prof. Steven M. LaValle M.S. Jan 2001 - Aug 2003 Department of Computer Science, Iowa State University, USA Thesis: A Multi-Relational Decision Tree Learning Algorithm - Implementation and Experiments Research advisor: Prof. Vasant Honavar B.S. Sep 1994 - June 1999 Department of Mathematics and Mechanical Engineering, Kharkiv National University, Ukraine Research advisor: Prof. Igor Chudinovich Academic Employment Sep 2008 - Present projects: advisor: Aug 2003 - Aug 2008 projects: advisor: June 2004 - Jul 2004 projects: advisor: Post-Doctoral Research Associate Donald Lab, Department of Computer Science, Duke University Development and implementation of the algorithms for protein structure determination from various NMR data; protein design. Prof. Bruce R. Donald Research Assistant Motion Strategy Laboratory, Department of Computer Science, University of Illinois Development and implementation of efficient sampling-based motion planning algorithms for problems with kinematic and differential constraints. Prof. Steven M. LaValle Visiting Scholar Laboratory for Analysis and Architecture of Systems, Toulouse, France Integration of the nearest-neighbor searching techniques into Move3D software package; development of the Dynamic-Domain RRT planner. Prof. Nicola Simeon 1 June 2002 - Aug 2003 Research Assistant AI Research Laboratory, Department of Computer Science, Iowa State University Development, implementation and testing of a decision tree learning algorithm for large relational databases. Prof. Vasant Honavar projects: advisor: Jan 2001 - Aug 2001 projects: advisor: Research Assistant Robotics and Computational Geometry Group, Department of Computer Science, Iowa State University Development of an efficient algorithm for nearest-neighbor searching in topological spaces that arise in the context of motion planning; integrating it into Motion Strategy Library. Prof. Steven M. LaValle Teaching Experience Jan 2002 - May 2002 Teaching Assistant for Theory of Computation graduate course Iowa State University Sep 2001 - Dec 2001 Teaching Assistant for Theory of Computation undergraduate course Iowa State University Jan 2001 - May 2001 Teaching Assistant for Design and Analysis of the Algorithms undergraduate course Iowa State University Sep 1998 - Dec 1999 Teacher of algebra, introduction to mathematical calculus, and geometry Kharkiv Gymnasium ”Veresen” Honors and awards 2006 Dave & Jane Liu Award (exceptional research promise) Department of Computer Science, University of Illinois 2002 - 2003 Research Fellowship Iowa State University Graduate College 2002 Graduate Teaching Excellence Award Iowa State University 2002 - 2003 John Vincent Atanasoff Graduate Award Department of Computer Science at Iowa State University 1999 Diploma with Honor Kharkiv National University Open Source Software • MPNN: Nearest Neighbor Library for Motion Planning http://www.cs.duke.edu/∼yershova/software/MPNN/MPNN.htm Anna Yershova, 2005 2 • Library for Uniform Deterministic Sequences/Sets of Samples over 2-sphere and SO(3) http://www.cs.duke.edu/∼yershova/software/so3sampling/so3sampling.htm Swati Jain, Anna Yershova, Julie Mitchell, 2009 Journal Papers • Mapping and Pursuit-Evasion Strategies For a Simple Wall-Following Robot Anna Yershova, Benjamin Tovar, Robert Ghrist, and Steven M. LaValle IEEE Transactions on Robotics, 2009, under review • Generating Uniform Incremental Grids on SO(3) Using the Hopf Fibration Anna Yershova, Swati Jain, Steven M. LaValle, and Julie C. Mitchell The International Journal of Robotics Research, 29: 801-812, Jun 01, 2010; • Improving Motion Planning Algorithms by Efficient Nearest-Neighbor Searching Anna Yershova, and Steven M. LaValle IEEE Transactions on Robotics, 23(1):151–157, February 2007 Invited Papers • Extracting Visibility Information by Following Walls Anna Yershova, Benjamin Tovar, and Steven M. LaValle, In Sandor Fekete and Rudolf Fleischer and Rolf Klein and Alejandro Lopez-Ortiz, editors, Dagstuhl Seminar Proceedings, 06421 Internationales Begegnungs- und Forschungszentrum fuer Informatik (IBFI), Schloss Dagstuhl, Germany, 2007. • Information Spaces for Mobile Robots Benjamin Tovar, Anna Yershova, Jason M. O’Kane, and Steven M. LaValle, Fifth International Workshop on Robot Motion and Control (RoMoCo 2005) Refereed Conference and Workshop Papers • Motion Planning in Highly Constrained Spaces Anna Yershova and Steven M. LaValle In Proc. Ninth International Workshop on Robot Motion and Control (RoMoCo 2009) • Generating Uniform Incremental Grids on SO(3) Using the Hopf Fibration Anna Yershova, Steven M. LaValle, and Julie C. Mitchell In Proc. Eighth International Workshop on the Algorithmic Foundations of Robotics (WAFR 2008) • Bitbots: Simple Robots Solving Complex Tasks Anna Yershova, Benjamin Tovar, Robert Ghrist, and Steven M. LaValle In Proc. The Twentieth National Conference on Artificial Intelligence (AAAI 2005) • Adaptive Tuning of the Sampling Domain for Dynamic-Domain RRTs L. Jaillet, A. Yershova, S. M. LaValle, and T. Simeon In Proc. IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS 2005) • Dynamic-Domain RRTs: Efficient Exploration by Controlling the Sampling Domain A. Yershova, L. Jaillet, T. Simeon, and S. M. LaValle In Proc. IEEE International Conference on Robotics and Automation (ICRA 2005) • Incremental Grid Sampling Strategies in Robotics Stephen R. Lindemann, Anna Yershova, and Steven M. LaValle In Proc. Sixth International Workshop on the Algorithmic Foundations of Robotics (WAFR 2004) 3 • Deterministic sampling methods for spheres and SO(3) Anna Yershova and Steven M. LaValle In Proc. IEEE International Conference on Robotics and Automation (ICRA 2004) • A Multi-Relational Decision Tree Learning Algorithm - Implementation and Experiments Anna Atramentov, Hector Leiva, Vasant Honavar In Proc. of the 13th International Conference on Inductive Logic Programming, pages 38-56 (ILP 2003) • Speeding Up Multi-Relational Data Mining Anna Atramentov and Vasant Honavar In Workshop on Learning Statistical Models from Relational Data at 2003 International Joint Conference on Artificial Intelligence (IJCAI 2003) • Experiments with MRDTL – A Multirelational Decision Tree Learning Algorithm H. Leiva, A. Atramentov, and V. Honavar In Workshop on Multi-Relational Data Mining at 2002 International Conference on Knowledge Discovery and Data Mining (KDD 2002) • Efficient Nearest Neighbor Searching for Motion Planning Anna Atramentov and Steven M. LaValle In Proc. IEEE International Conference on Robotics and Automation, pages 632-637 (ICRA 2002) Theses, Posters, and Technical Reports • Protein Structure Determination using Sparse Orientational Restraints from NMR Data C. Tripathy, A. Yershova, P. Zhou, and B. R. Donald, Biochemistry Department Retreat, NC Biotechnology Center, RTP, NC, September 26, 2009. Winner of Best Poster Award. • Sampling and Searching Methods for Practical Motion Planning Algorithms Anna Yershova Ph.D. Dissertation, UIUC, 2008 • A Multi-Relational Decision Tree Learning Algorithm - Implementation and Experiments Anna Atramentov M.S. Thesis, Iowa State University, 2003 Textbooks for High School • Dictionary on Algebra and Introduction to Mathematical Calculus for High School Students (in Russian) L. Gendenshtein, A. Yershova and A. Yershova (1997) • Exercise Materials on Mathematics for High School Students (in Russian) A. Yershova, D. Goloborodko and A. Yershova (1998) Invited Talks • Mapping and Pursuit-Evasion Strategies For a Simple Wall-Following Robot Algorithms Seminar Series, Duke University, April 20, 2010 • Automated High-Resolution Protein Structure Determination using Residual Dipolar Couplings Distinguished Seminar Series at ECE department, NC State University, February 5, 2010 • Sampling and Searching Methods in Robotics and Computational Biology NIFP Workshop, Rice University, October 20, 2009 4 • Sampling and Searching Methods for Practical Motion Planning Algorithms Algorithms Seminar at Computer Science Department, Duke University, September 17, 2007 • Sampling and Searching Methods for Practical Motion Planning Algorithms Preliminary examination, UIUC, August 29, 2007 • Progress with Dynamic Domain RRTs Toyota Motor Corporation, Japan, March 8, 2006 • Sampling based Motion Planning Introduction to Robotics, ECE 470, The University of Illinois at Urbana-Champaign, November 10, 2005 • Deterministic sampling methods for spheres and SO(3) American Mathematical Society/Northwestern University Math. Dept. meeting, Evanston, IL, October 23-24, 2004 • Sampling Methods in Robot Motion Planning LAAS-CNRS/RIA Research Group Seminar, Toulouse, France, June 15, 2004 • The Recent Impact of QMC Methods on Robot Motion Planning International Conference on Monte Carlo and Quasi-Monte Carlo Methods in Scientific Computing (MC2QMC 2004), Juan-les-Pins, France, June 8, 2004 Professional and Scientific Activities • Reviewer for SIAM Review journal (SIREV), International Journal of Robotics Research (IJRR), Transactions on Robotics Journal (TRO), International Conference on Robotics and Automation (ICRA), International Conference on Intelligent Robots and Systems (IROS), Workshop on the Algorithmic Foundations of Robotics (WAFR), Uncertainty in Artificial Intelligence (UAI) References Bruce Randall Donald (Post-Doc advisor) William and Sue Gross Professor Departments of Computer Science and Biochemistry Duke University Steven M. LaValle (Ph.D. advisor) Professor Department of Computer Science University of Illinois Julie C. Mitchell Associate Professor Departments of Mathematics and Biochemistry University of Wisconsin-Madison Robert W. Ghrist Professor, Departments of Mathematics and Electrical / Systems Engineering University of Pennsylvania 5