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BIOL 3046: Molecular evolution Key terms: Genetic drift Mutation Bottleneck Founder effect Sampling error Substitution Review material Genetic drift (PopGen T4) Fixation Polymorphism Founder effect speciation hypothesis Review questions: 1. Explain how the relationship between genetic drift of allele frequencies and binomial sampling of gametes. 2. What is the fate of polymorphism in a population of infinite size? What about a population of finite size? 3. Consider two populations with the following census sizes: Popn1 = 50 and Popn2 = 5000. The number of individuals that reproduce each generation for popn1 = 50 and for popn2 = 5. What is the magnitude of genetic drift over time within these two populations? What is the expected effect on genetic diversity as a function of time? Explain the basis for any differences between these two populations? 4. Explain why Ne is actually a measure of the reproductive sample size. 5. What controls the rate of change in allele frequencies under genetic drift? What determines the probability that an allele is ultimately fixed or lost? Consider two populations each with the frequency of A allele = 0.5: Popn1 has Ne = 100000, and popn2 has Ne = 100. What can you say about the fate of the A allele over time? What can you say about how long it will take? 6. Explain why inbreeding and genetic drift are not independent in natural populations. What are the combined effects of inbreeding and drift? 7. What is the relationship between mutation, polymorphism and substitution under genetic drift. 8. Comment on those aspects of genetic drift that are predictable and those that are unpredictable. 9. Consider the genetic effects of a severe bottleneck on two species; one species recovers with no difficulties while the other species exhibits increased frequencies of individuals exhibiting deleterious recessive traits. Explain how two species subjected to bottlenecks of the same magnitude can be affected so differently. Understand the “keynotes” for genetic drift.