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SUPPLEMENTAL TABLE: The 100 class-defining gene probes. Affymeterix # 1555419_a_at 1557675_at 1557718_at 1558135_at 1558732_at 1565703_at 1568943_at 200605_s_at 200958_s_at Genbank BC016828 BI496583 AL834350 BQ709323 AK074900 AL832789 BC027960 NM_002734 NM_005625 Gene Symbol ASAH1 RAF1 PPP2R5C TAF11 --SMAD4 INPP5D PRKAR1A SDCBP 201179_s_at 201603_at 202395_at J03005 AI817061 NM_006178 GNAI3 PPP1R12A NSF 202625_at 202789_at 203140_at 203266_s_at 203561_at 203837_at 204225_at 204297_at 204780_s_at 204859_s_at 204924_at 204949_at 205456_at 205841_at 205931_s_at 206011_at 206854_s_at 207238_s_at 207387_s_at 208200_at 209310_s_at 209685_s_at 210031_at AI356412 AL022394 NM_001706 NM_003010 NM_021642 NM_005923 NM_006037 NM_002647 AA164751 NM_013229 NM_003264 NM_002162 NM_000733 NM_004972 NM_004904 AI719655 NM_003188 NM_002838 NM_000167 NM_000575 U25804 M13975 J04132 LYN PLCG1 BCL6 MAP2K4 FCGR2A MAP3K5 HDAC4 PIK3C3 FAS APAF1 TLR2 ICAM3 CD3E JAK2 CREB5 CASP1 MAP3K7 PTPRC GK IL1A CASP4 PRKCB1 CD247 210162_s_at 210176_at 210992_x_at 211157_at 211583_x_at 211711_s_at 211963_s_at 212612_at 212669_at U08015 AL050262 U90939 AF119878 AF031136 BC005821 AL516350 D31888 AI093569 NFATC1 TLR1 FCGR2C --NCR3 PTEN ARPC5 RCOR1 CAMK2G Description N-acylsphingosine amidohydrolase (acid ceramidase) 1 V-raf-1 murine leukemia viral oncogene homolog 1 protein phosphatase 2, regulatory subunit B (B56), TAF11 RNA polymerase II --SMAD, mothers against DPP homolog 4 (Drosophila) inositol polyphosphate-5-phosphatase, 145kDa protein kinase, cAMP-dependent, regulatory, type I, syndecan binding protein (syntenin) guanine nucleotide binding protein, inhibiting activity polypeptide 3 protein phosphatase 1, regulatory (inhibitor) subunit 12A N-ethylmaleimide-sensitive factor v-yes-1 Yamaguchi sarcoma viral related oncogene homolog phospholipase C, 1 B-cell CLL/lymphoma 6 mitogen-activated protein kinase kinase 4 Fc fragment of IgG, low affinity IIa, receptor (CD32) mitogen-activated protein kinase kinase kinase 5 histone deacetylase 4 phosphoinositide-3-kinase, class 3 Fas (TNF receptor superfamily, member 6) apoptotic peptidase activating factor toll-like receptor 2 intercellular adhesion molecule 3 CD3e molecule, (CD3-TCR complex) Janus kinase 2 (a protein tyrosine kinase) cAMP responsive element binding protein 5 caspase 1 mitogen-activated protein kinase kinase kinase 7 protein tyrosine phosphatase, receptor type, C glycerol kinase interleukin 1, caspase 4 protein kinase C, 1 CD247 molecule nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1 toll-like receptor 1 Fc fragment of IgG, low affinity IIc, receptor for (CD32) --natural cytotoxicity triggering receptor 3 phosphatase and tensin homolog actin related protein 2/3 complex, subunit 5, 16kDa REST corepressor 1 calcium/calmodulin-dependent protein kinase II 212982_at 213044_at 213333_at 213579_s_at 214032_at 214322_at 214329_x_at 214980_at 215605_at 215668_s_at 215719_x_at 216033_s_at AI621223 N22548 AL520774 AI459462 AI817942 AA284757 AW474434 AF037219 AU145806 AJ011414 X83493 S74774 ZDHHC17 LOC651633 MDH2 EP300 ZAP70 CAMK2G TNFSF10 UBE3A NCOA2 PLXNB1 FAS FYN 216997_x_at 217478_s_at 218323_at 218806_s_at 219290_x_at 220078_at AL358975 X76775 NM_018307 AF118887 NM_014395 NM_018391 TLE4 HLA-DMA RHOT1 VAV3 DAPP1 USP48 220778_x_at 220832_at 221500_s_at 221581_s_at 221616_s_at 223679_at 224203_at 224621_at 224754_at NM_020241 NM_016610 BE782754 AF257135 AF077053 AF130085 AF222345 AA129773 BG431266 SEMA6B TLR8 STX16 LAT2 TAF9B CTNNB1 SUFU MAPK1 SP1 224902_at 224994_at 225927_at 226878_at 226929_at 227131_at 227817_at 228173_at 228343_at 228363_at 229228_at 229560_at 230086_at 230337_at 230761_at 231873_at BE644918 AA777512 AA541479 AL581873 AA524272 BG231756 R51324 AA810695 AA805754 BF109251 AI819043 AW872374 AA937109 AW241962 AI972599 AL046696 PDPR CAMK2D MAP3K1 HLA-DOA MTHFR MAP3K3 PRKCB1 --POU2F2 BIRC4 CREB5 TLR8 FNBP1 SOS1 USP7 BMPR2 233539_at 234714_x_at AK000801 U15688 NAPE-PLD ATP2B2 zinc finger, DHHC-type containing 17 similar to Rho-associated protein kinase 1 Malate dehydrogenase 2, NAD (mitochondrial) E1A binding protein p300 zeta-chain (TCR) associated protein kinase 70kDa calcium/calmodulin-dependent protein kinase II tumor necrosis factor (ligand) superfamily, member 10 Ubiquitin protein ligase E3A Nuclear receptor coactivator 2 plexin B1 Fas (TNF receptor superfamily, member 6) FYN oncogene related to SRC, FGR, YES transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila) major histocompatibility complex, class II, DM ras homolog gene family, member T1 vav 3 oncogene dual adaptor of phosphotyrosine and phosphoinositides Ubiquitin specific peptidase 48 sema domain, transmembrane domain (TM), and cytoplasmic domain, 6B toll-like receptor 8 syntaxin 16 linker for activation of T cells family, member 2 TAF9B RNA polymerase II Catenin (cadherin-associated protein), 1, 88kDa suppressor of fused homolog (Drosophila) mitogen-activated protein kinase 1 Sp1 transcription factor pyruvate dehydrogenase phosphatase regulatory subunit calcium/calmodulin-dependent protein kinase II mitogen-activated protein kinase kinase kinase 1 major histocompatibility complex, class II, DO 5,10-methylenetetrahydrofolate reductase (NADPH) mitogen-activated protein kinase kinase kinase 3 Protein kinase C, 1 --POU domain, class 2, transcription factor 2 baculoviral IAP repeat-containing 4 cAMP responsive element binding protein 5 toll-like receptor 8 formin binding protein 1 son of sevenless homolog 1 (Drosophila) Ubiquitin specific peptidase 7 bone morphogenetic protein receptor, type II N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D ATPase, Ca++ transporting, plasma membrane 2 235374_at 235526_at 236283_x_at 236492_at 236561_at 239585_at 240221_at 241905_at 242482_at 244687_at 244801_at AW952547 BE748802 AA287921 AI934447 AV700621 AV735100 AV704610 AA579047 AI682905 AI632010 AI248671 MDH1 SOX6 PAK2 PPP2R2A TGFBR1 --CSNK1A1 PIK3C2A PRKAR1A DBT PSMB7 Malate dehydrogenase 1, NAD (soluble) SRY (sex determining region Y)-box 6 P21 (CDKN1A)-activated kinase 2 protein phosphatase 2, regulatory subunit B, Transforming growth factor, receptor I --Casein kinase 1, 1 Phosphoinositide-3-kinase, class 2, polypeptide protein kinase, cAMP-dependent, regulatory, type I, Dihydrolipoamide branched chain transacylase E2 Proteasome (prosome, macropain) subunit, type, 7
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