Download Table S3. Transcription regulatory element abbreviations ZFXY

Table S3. Transcription regulatory element abbreviations
LHXF
ABDB Abdominal-B type homeodomain transcription factors
AHRR AHR-arnt heterodimers and AHR-related factors
MAZF
AIRE Autoimmune regulatory element binding factor
MEF2
AP1R MAF and AP1 related factors
MOKF
AP2F Activator protein 2
MYBL
AP4R AP4 and related proteins
MYOD
ARID AT rich interactive domain factor
MYT1
BCDF Bicoid-like homeodomain transcription factors
MZF1
BCL6 POZ domain zinc finger expressed in B-Cells
NEUR
BRAC Brachyury gene, mesoderm developmental factor
NF1F
BRN5 Brn-5 POU domain factors
NFAT
BRNF Brn POU domain factors
NFKB
CAAT CCAAT binding factors
NKX6
CART Cart-1 (cartilage homeoprotein 1)
NKXH
CDEF Cell cycle regulators: Cell cycle dependent element
NOLF
CDXF Vertebrate caudal related homeodomain protein
NR2F
CEBP Ccaat/Enhancer Binding Protein
NRF1
CIZF CAS interating zinc finger protein
NRSF
CLOX CLOX and CLOX homology (CDP) factors
OCT1
CP2F CP2-erythrocyte Factor related to drosophila Elf1
OVOL
CREB cAMP-responsive element binding proteins
PARF
CSEN Calsenilin, presenilin binding protein, EF hand transcription factor
PAX2
CTCF and BORIS gene family, transcriptional regulators with 11 highly PAX3
CTCF conserved zinc finger domains
PAX6
Homolog to deformed epidermal autoregulatory factor-1 from D.
PAX8
DEAF melanogaster
PBXC
DMRT DM domain-containing transcription factors
PDX1
E2FF E2F-myc activator/cell cycle regulator
PIT1
Ubiquitous GLI - Krueppel like zinc finger involved in cell cycle
PLAG
E4FF regulation
PRDF
EBOX E-box binding factors
PREB
EGRF EGR/nerve growth factor induced protein C & related factors
PTF1
ETSF Human and murine ETS1 factors
RBPF
EVI1 EVI1-myleoid transforming protein
RORA
FAST FAST-1 SMAD interacting proteins
RP58
FKHD Fork head domain factors
RU49
FXRE Farnesoid X - activated receptor response elements
RUSH
GATA GATA binding factors
GCMF Chorion-specific transcription factors with a GCM DNA binding domain RXRF
GFI1 Growth factor independence transcriptional repressor
SIXF
GLIF GLI zinc finger family
SNAP
GREF Glucocorticoid responsive and related elements
SORY
GRHL Grainyhead-like transcription factors
SP1F
GTBX GT box
SPZ1
GZF1 GDNF-inducible zinc finger gene 1
SRFF
HAML Human acute myelogenous leukemia factors
STAT
HAND Twist subfamily of class B bHLH transcription factors
TALE
HBOX Homeobox transcription factors
TCFF
HEAT Heat shock factors
TEAF
HESF Vertebrate homologues of enhancer of split complex
TF2B
HIFF Hypoxia inducible factor, bHLH/PAS protein family
TF2D
HMTB Human muscle-specific Mt binding site
VSMA
HNF1 Hepatic Nuclear Factor 1
VTBP
HNF6 Onecut homeodomain factor HNF6
XBBF
HOMF Homeodomain transcription factors
XCPE
HOXC HOX - PBX complexes
HOXF Paralog hox genes 1-8 from the four hox clusters A, B, C, D
YBXF
HOXH HOX - MEIS1 heterodimers
HZIP Homeodomain-leucine zipper transcription factors
IKRS Ikaros zinc finger family
YY1F
INRE Core promoter initiator elements
ZBPF
INSM Insulinoma associated factors
ZFHX
IRFF Interferon regulatory factors
ZFXY
KLFS Krueppel like transcription factors
LEFF LEF1/TCF
ZNFP
Lim homeodomain factors
Myc associated zinc fingers
MEF2, myocyte-specific enhancer binding factor
Mouse Krueppel like factor
Cellular and viral myb-like transcriptional regulators
Myoblast determining factors
MYT1 C2HC zinc finger protein
Myeloid zinc finger 1 factors
NeuroD, Beta2, HLH domain
Nuclear factor 1
Nuclear factor of activated T-cells
Nuclear factor kappa B/c-rel
NK6 homeobox transcription factors
NKX homeodomain factors
Neuron-specific-olfactory factor
Nuclear receptor subfamily 2 factors
Nuclear respiratory factor 1
Neuron-restrictive silencer factor
Octamer binding protein
OVO homolog-like transcription factors
PAR/bZIP family
PAX-2 binding sites
PAX-3 binding sites
PAX-4/PAX-6 paired domain binding sites
PAX-2/5/8 binding sites
PBX1 - MEIS1 complexes
Pancreatic and intestinal homeodomain transcription factor
GHF-1 pituitary specific pou domain transcription factor
Pleomorphic adenoma gene
Positive regulatory domain I binding factor
PREB core-binding element
Pancreas transcription factor 1, heterotrimeric transcription factor
RBPJ - kappa
v-ERB and RAR-related orphan receptor alpha
RP58 (ZFP238) zinc finger protein
Zinc finger transcription factor RU49, zinc finger proliferation 1 - Zipro1
SWI/SNF related nucleophosphoproteins with a RING finger DNA binding
motif
RXR heterodimer binding sites
Sine oculis (SIX) homeodomain factors
snRNA-activating protein complex
SOX/SRY-sex/testis determinig and related HMG box factors
GC-Box factors SP1/GC
Testis-specific bHLH-Zip transcription factors
Serum response element binding factor
Signal transducer and activator of transcription
TALE homeodomain class recognizing TG motifs
TCF11 transcription factor
TEA/ATTS DNA binding domain factors
RNA polymerase II transcription factor II B
General transcription factor IID, GTF2D
Vertebrate SMAD family of transcription factors
Vertebrate TATA binding protein factor
X-box binding factors
Activator-, mediator- and TBP-dependent core promoter element for RNA
polymerase II transcription from TATA-less promoters
Y-box binding transcription factors, multifunctional proteins involved in
transcriptional and translational regulation, mRNA splicing, DNA
replication and repair
Activator/repressor binding to transcription initiation site
Zinc binding protein factors
Two-handed zinc finger homeodomain transcription factors
Zfx and Zfy - transcription factors implicated in mammalian sex
determination
Zinc finger proteins