Download Helicobacter cetorum MIT 99-5656

Putative Helicobacter cetorum MIT 99-5656 RM systems
Ref: Kersulyte,D. and Berg,D.E. unpublished
REBASE ref # 14430
Complete sequence: 1,833,666 bp
GenBank #: CP003481
REBASE acronym: Hce99
Org_num: 8769
All begin HCD_
Type I
ORF Gene Most similar
2100
2105
2110
2115
4125
4130
4135
4140
4145
4150
4155
S
M
M
S
R
Specificity
298 aa hypothetical protein
S.Hce7128ORF4560P (0% identity)
M.Hce7128ORF4560P (0% identity)
Holliday junction resolvase-like protein
Name
S.Hce99ORF2110P
M.Hce99ORF2110P
copper efflux system membrane protein CusA
M.HpyPORF1509P (0% identity)
87 aa hypothetical protein
RelB protein
S.HpyFD568ORFD1P (0% identity)
HpyNCI57ORFVP (0% identity)
235 aa hypothetical protein
M.Hce99ORF4130P
S.Hce99ORF4130P
Hce99ORF4130P
4170
4175
4180
S
467 aa hypothetical protein
S.Hpy355ORF3610P (0% identity)
replicative DNA helicase
S.Hce99ORF4175P
4775
4780
4785
4790
4795
R
S
M
NADP-dependent malic enzyme (NADP-me)
Udi49782ORF2280P (0% identity)
S.Bpi2904ORF1471P (0% identity)
M.FnuVORFDP (0% identity)
prephenate dehydrogenase
Hce99ORF4790P
S.Hce99ORF4790P
M.Hce99ORF4790P
7760
7765
7770
M
L-serine deaminase
M.Gsp5420ORF15165P (0% identity)
IS606 transposase
M.Hce99ORF7765P
7775
7780
7785
M
IS200 insertion sequence from SARA17
Gsp3708ORF777P (0% identity)
67 aa hypothetical protein
M.Hce99ORF7780P
Type II
ORF Gene Most similar
Specificity
Name
525
???
540
M
670
675
680
685
M
R
1150
1155
1160
RM
227 aa hypothetical protein
Hce7128ORF7495P (0% identity)
135 aa hypothetical protein
1510
1515
1520
1525
R
M
outer membrane protein 8
Hpy26A1ORF2365P (0% identity)
M.HpyNAB47ORFC1P (0% identity)
DNA gyrase subunit B
1905
1910
1915
1920
1925
M
M
R
336 aa hypothetical protein
M.Hce7128ORF1440P (0% identity)
M.Hce7128ORF1440P (0% identity)
Hce7128ORF1440P (0% identity)
adenine specific DNA methyltransferase
1920
1925
1930
M
AlwI restriction endonuclease family protein
M.Hce7128ORF7450P (0% identity)
ATP-dependent DNA helicase
1930
???
1950
1955
1960
1965
1970
2050
2055
2060
R
M
M
M
2395
2400
2405
2410
2740
2745
2750
M
R
M
366 aa hypothetical protein
M.Hpy120ORF7775P (0% identity)
anthranilate synthase component I
lipopolysaccharide 1,2-glucosyltransferase
M.Hpy1786ORF4860P (0% identity)
Hpy271ORFC1P (0% identity)
UDP-N-acetylenolpyruvoylglucosamine
reductase
ATP-dependent DNA helicase
Hpy5004ORF5305P (0% identity)
M.HpyB8ORF1059P (0% identity)
IS606 transposase
IS200 insertion sequence from SARA17
M.Hpy340ORF2215P (0% identity)
integral membrane protein
151 aa hypothetical protein
M.HpyOki112ORF2045P (0% identity)
GTP-binding protein LepA
ATP-dependent Clp protease, ATP-binding
subunit
M.Hce7128ORF4940P (0% identity)
Hce7128ORF4940P (0% identity)
IS606 transposase
498 aa hypothetical protein
M.Hce7128ORF6445P (0% identity)
purine-nucleoside phosphorylase
M.Hce99ORF530P
GAATTC
GAATTC
M.Hce99ORF675P
Hce99ORF675P
Hce99ORF1155P
GTAC
GTAC
Hce99ORF1520P
M.Hce99ORF1520P
M1.Hce99ORF1910P
M2.Hce99ORF1910P
Hce99ORF1910P
GTNNAC
M.Hce99ORF1925P
GGCC
GGCC
Hce99ORF1950P
M.Hce99ORF1950BP
GGCC
M.Hce99ORF1950AP
GCNGC
M.Hce99ORF2055P
CCGG
CCGG
M.Hce99ORF2400P
Hce99ORF2400P
M.Hce99ORF2745P
3635
3640
3645
3650
3655
M
R
Symporter, SSS family (Proline Permease),
M.Hpy94ORF275P (0% identity)
27 aa hypothetical protein
Hpy328ORF3605P (0% identity)
4-hydroxythreonine-4-phosphate dehydrogenase
CCTTC
M.Hce99ORF3640P
CCTTC
Hce99ORF3640P
GATATC
GATATC
Hce99ORF3920P
M.Hce99ORF3920P
3905
???
3920
3925
R
M
45 aa hypothetical protein
Hpy135ORF7015P (0% identity)
M.HpyNCI26ORFCP (0% identity)
site-specific DNA-methyltransferase
3920
3925
3930
M
DNA adenine methylase
M.Hce99ORF530P (0% identity)
208 aa hypothetical protein
3930
3935
3940
M
208 aa hypothetical protein
M.Hce7128ORF600P (0% identity)
50S ribosomal protein L17
CATG
M.Hce99ORF3935P
4225
4230
4235
4240
M
R
79 aa hypothetical protein
M.HpyNCI23IV (0% identity)
Hpy10165ORFAP (0% identity)
165 aa hypothetical protein
GANTC
GANTC
M.Hce99ORF4225P
Hce99ORF4225P
4285
???
4300
4305
S
RM
cagY like protein
S.Hpy17874ORF3814P (0% identity)
Hpy99XXII (0% identity)
191 aa hypothetical protein
S.Hce99ORF4290P
Hce99ORF4290P
4445
4450
???
4465
M
R
581 aa hypothetical protein
M.Hpy20ORF2270P (0% identity)
Hce7128ORF3445P (0% identity)
outer membrane protein HopK
M.Hce99ORF4450P
Hce99ORF4450P
4535
4540
???
???
4565
M
M
R
transcription elongation factor NusA
M1.HpyMKF10ORF75P (0% identity)
M2.HpySA20ORF1651P (0% identity)
Hpy5056ORF8915P (0% identity)
type III restriction enzyme
GAAGA
GAAGA
GAAGA
M1.Hce99ORF4540P
M2.Hce99ORF4540P
Hce99ORF4540P
4675
???
4690
4695
R
M
branched-chain amino acid aminotransferase
Hpy1786ORF5060P (0% identity)
M.Hpy300II (0% identity)
67 aa hypothetical protein
TGCA
TGCA
Hce99ORF4690P
M.Hce99ORF4690P
4835
???
4850
RM
rod shape-determining protein MreC
HpyNCI40ORFZP (0% identity)
115 aa hypothetical protein
5160
5165
R
IS200 insertion sequence from SARA17
HpyNCI34ORFHP (0% identity)
M.Hce99ORF3925P
Hce99ORFAP
GGNNCC
Hce99ORF5170P
5170
5175
M
M.HpyNCI22ORFYP (0% identity)
267 aa hypothetical protein
GGNNCC
M.Hce99ORF5170P
5495
???
5510
5515
R
M
dihydrodipicolinate reductase
Hce99ORF6290P (0% identity)
M.Hce99ORF6290P (0% identity)
FAD linked oxidase-like protein
5945
5950
5955
5960
R
M
GTP-binding protein TypA
Hce7128ORF6055P (0% identity)
M.HpyMKM6ORF479P (0% identity)
outer membrane protein (omp22)
6270
???
6290
6295
R
M
285 aa hypothetical protein
Hce99ORF5510P (0% identity)
M.Hce99ORF5510P (0% identity)
sec-independent translocase
Hce99ORF6290P
M.Hce99ORF6290P
6630
???
6660
M
flagellar hook protein FlgE
M.HfeORF8960P (0% identity)
iron(III) dicitrate transporter, ATP-binding
M.Hce99ORF6650P
7280
7285
7290
7295
R
M
144 aa hypothetical protein
HpySS1DORF1065P (0% identity)
M.HpySS1DORF1065P (0% identity)
FlgM protein
GCGC
GCGC
Hce99ORF7290P
M.Hce99ORF7290P
7400
7405
7410
7415
M
R
429 aa hypothetical protein
M.Hce7128ORF8615P (0% identity)
Hce7128ORF8615P (0% identity)
excinuclease ABC subunit B
TCNNGA
TCNNGA
M.Hce99ORF7405P
Hce99ORF7405P
7465
7470
7475
M
GCSGC
M.Hce99ORF7470P
8460
8465
8470
8475
M
R
glucokinase
M.Hpy99XI (0% identity)
Hpy7ORF2175P (0% identity)
tetracycline resistance protein tetA(P)
ACGT
ACGT
M.Hce99ORF8465P
Hce99ORF8465P
8540
8545
8550
8555
R
M
protein-export membrane protein SecD
HpySA7ORF5765P (0% identity)
M.Hpy7ORF5865P (0% identity)
hydrogenase expression/formation protein
TCNGA
TCNGA
Hce99ORF8550P
M.Hce99ORF8550P
CCTC
CCTC
CCTC
M1.Hce99ORF8570P
M2.Hce99ORF8570P
Hce99ORF8570P
8565
8570
8575
???
M
M
R
IS200 insertion sequence from SARA17
M.Hpy86ORF3810P (0% identity)
UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate
330 aa hypothetical protein
M1.Hpy102ORF505P (0% identity)
M2.Hce7128ORF2255P (0% identity)
Hce7128ORF2255P (0% identity)
Hce99ORF5510P
M.Hce99ORF5510P
ATTAAT
ATTAAT
Hce99ORF5955P
M.Hce99ORF5955P
8590
UGMP family protein
8590
8595
8600
M
UGMP family protein
M.Hce7128ORF1270P (0% identity)
183 aa hypothetical protein
8615
???
8630
8635
8640
M
M
R
337 aa hypothetical protein
M1.HpyNCI16ORFUP (0% identity)
M1.Hpy180ORF7435P (0% identity)
Hpy180ORF7435P (0% identity)
247 aa hypothetical protein
GATC
M.Hce99ORF8595P
M1.Hce99ORF8620P
M2.Hce99ORF8620P
Hce99ORF8620P
Type III
ORF Gene Most similar
Specificity
Name
???
4565
4570
4575
R
M
DNA -methyltransferase
HpySA7ORF7260P (0% identity)
M.Hpy1786ORF3090P (0% identity)
ATP-dependent DNA helicase RecG
Hce99ORF4570P
M.Hce99ORF4570P
4650
4655
4660
4665
M
R
161 aa hypothetical protein
M.SspS23ORF15300P (0% identity)
SspS23ORF15300P (0% identity)
DNA polymerase I
M.Hce99ORF4655P
Hce99ORF4655P