Download Gene number

Table S3. Main features of genes accumulating transcripts in the mat+ strain.
Gene numbera
Pa_2_2310
Pa_4_3858 (Δ)
Pa_1_24410 (Δ)
Pa_4_1380 (Δ)
Pa_5_3435 (Δ)
Pa_7_4100 (Δ)
Pa_3_3210 (Δ)
Pa_5_9770 (Δ)
Pa_5_6960 (Δ)
Pa_1_9625 (Δ)
Pa_3_1710
Pa_5_12980
Pa_1_540 (Δ)
Pa_4_3160
Pa_6_515
Pa_1_18670
Pa_2_13290
Pa_1_16335
Pa_4_1370
Pa_4_7760 (Δ)
Pa_7_9690
Pa_7_1820
Pa_1_20140
Pa_5_4585
Pa_4_9360
Pa_2_8800
Pa_4_7450
Pa_6_540
Pa_6_9760
Pa_1_19170
Pa_6_9980
Pa_7_2860 (Δ)
Pa_5_820
Pa_6_350
Pa_2_5500
Pa_2_9145 (Δ)
Pa_5_7250
Pa_0_690
Pa_2_7170
Pa_6_11620
Pa_2_4810
Pa_2_7180 (Δ)
Pa_5_9600
Pa_4_80
Pa_5_12470
Pa_3_8590
Pa_2_9500 (Δ)
Pa_1_30
Pa_5_9790 (Δ)
Pa_5_11640
Pa_5_11460
Pa_7_2870
Pa_0_1270
Pa_1_20590
Pa_4_860
Pa_1_5530 (Δ)
Pa_2_6010
Pa_2_6830 (Δ)
Pa_5_7750
Pa_1_10600
Pa_1_12800
Pa_7_950
Pa_1_8280
Pa_1_15470
Pa_3_1990
Pa_2_3690 (Δ)
FC
144.05
48.16
27.87
11.23
7.76
7.5
7.2
5.96
5.94
5.08
4.58
3.64
3.6
3.54
3.52
3.43
3.42
3.28
3.06
3,03
2,95
2,79
2,77
2,73
2,67
2,64
2,62
2,61
2,56
2,54
2,53
2,5
2,49
2,48
2,48
2,46
2,45
2,42
2,4
2,4
2,4
2,39
2,39
2,37
2,36
2,36
2,36
2,35
2,35
2,34
2,32
2,31
2,29
2,27
2,27
2,27
2,26
2,26
2,25
2,25
2,24
2,24
2,23
2,23
2,22
2,22
Gene name or function
MFP
unknown function
SAM-dependent methyltransferase
PRE2
unknown function
unknown function
unknown function
Asp protease
unknown function
unknown function
AOX
unknown function
unknown function
phosphoenolpyruvate carboxykinase
unknown function
unknown function
unknown function
unknown function
amidohydrolase
farnesyltransferase subunit beta
protein-S-isoprenylcysteine O-methyltransferase
mitochondrial NADH-ubiquinone oxidoreductase 1
unknown function
unknown function
fructose-1,6-bisphosphatase
unknown function
ketopantoate hydroxymethyltransferase
unknown function
nonribosomal peptide synthetase
unknown function
unknown function
cyclic-nucleotide phosphodiesterase
unknown function
plasma membrane proteolipid 3
cation-transporting ATPase
unknown function
unknown function
acyl CoA thioesterase
glycosyltransferase
methionine permease
unknown function
unknown function
isovaleryl-CoA dehydrogenase
unknown function
unknown function
cytochrome c
unknown function
unknown function
unknown function
ABC transporter
abhydrolase
unknown function
MSF superfamily
FPR1
unknown function
unknown function
cholesterol oxidase
C6 transcription factor
polyketide synthase
mitochondrial deoxynucleotide carrier
unknown function
unknown function
unknown function
laccase
polyketide synthase
unknown function
mat+
specific
expression
+
+
+
+
+
+
+
+
+
+
+
Class
4
4
4
4
4
4
4
4
4
4
4
4
4
4
7
1
4
5
4
4
8
4
8
4
8
4
4
8
4
1
8
4
1
4
3
4
4
4
4
4
4
4
4
1
1
4
4
1
4
8
4
4
3
1
4
4
4
4
4
4
4
8
8
4
8
2
FPR1b
A
A
A
A
A
A
A
A
A
A
A
A
A
A
A
0
A
0
A
A
A
A
A
A
0
A
A
0
A
0
A
A
0
A
A
A
A
A
A
A
A
A
A
0
0
A
A
0
A
0
A
A
A
0
A
A
A
A
A
A
A
0
0
A
0
A
FMR1c
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
R
0
0
R
0
0
0
0
0
0
0
0
0
0
0
0
0
R
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
A
0
0
0
0
0
0
0
0
0
0
0
0
R
Pa_0_1190
Pa_2_10220
Pa_7_3250
Pa_4_5450 (Δ)
Pa_5_3130
Pa_4_9520 (Δ)
Pa_1_1230
Pa_4_3860
Pa_2_1170 (Δ)
Pa_2_11120
Pa_1_15590
Pa_6_3770 (Δ)
Pa_1_15330
Pa_2_50
Pa_1_20510
Pa_4_230
Pa_5_570
Pa_1_22300
Pa_4_3210
Pa_2_7590
Pa_3_720
Pa_2_5340
a
2,2
2,19
2,18
2,17
2,16
2,16
2,14
2,09
2,09
2,08
2,08
2,06
2,06
2,05
2,05
2,04
2,04
2,03
2,03
2,02
2,01
2,01
molybdenum cofactor sulfurase
Glutamine synthetase
unknown function
unknown function
esterase/lipase
copper fist DNA binding domain protein
unknown function
esterase/lipase
unknown function
malic enzyme
unknown function
C6 transcription factor
membrane transport protein
mannose-6-phosphate isomerase
sugar transporter
unknown function
unknown function
glycine dehydrogenase
unknown function
unknown function
unknown function
esterase/lipase
+
+
6
4
4
2
4
4
8
8
4
8
4
4
4
4
2
1
8
8
4
8
4
4
0
A
A
A
A
A
0
A
A
A
A
A
A
A
A
0
0
A
A
0
A
A
Genes selected for deletion are marked with Δ.
b
A: gene induced by FPR1; R: gene repressed by FPR1; 0: gene not controlled by FPR1.
c
A: gene induced by FMR1; R: gene repressed by FMR1; 0: gene not controlled by FMR1.
A
0
0
R
0
0
0
0
0
0
0
0
0
0
R
0
0
0
0
0
0
0