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Supplemental Data: Supplemental Table S1: The entire dataset of the relative contents of metabolites in growing time 1. Supplemental Table S2: The entire dataset of the relative content of metabolites in growing time 2. Supplemental Table S3: The entire dataset of the p-values of the Two Way ANOVA of the data sets from the different seed growing times. Supplemental Table S4: Expression levels of genes whose mRNA levels were significantly different between WT and KD during seeds maturation (data is presented in log2 values). Supplemental Table S5: An elaboration of the overrepresentation analysis of genes whose mRNA levels were significantly different between WT and KD during seeds maturation. Supplemental Table S6: Complete microarray results of expression levels in the WT and KD seeds during seed maturation (data is presented in log2 values). Supplemental Table S7: Calculated ratios of transcript levels of KD vs WT genes whose mRNA levels were significantly different between WT and KD seeds Supplemental Table S8: Abbreviation of the network metabolites of Fig. 4. Supplemental Figure S1: Principal-component analysis (PCA) of metabolite profiles of distinct maturation stages of seeds of the WT and KD genotype. Supplemental Figure S2: Effect of altered Lys metabolism in the KD genotype on the levels and deposition of the 12S cruciferin storage proteins.