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Additional file table S3: Annotated and putative function of the genes included in the atypical regions Gene AC # AFUA_1G01020 AFUA_1G01490 AFUA_1G01660 AFUA_1G01670 AFUA_1G01680 AFUA_1G01690 AFUA_1G04400 AFUA_1G05200 AFUA_1G05850 AFUA_1G05960 AFUA_1G06800 AFUA_1G06810 AFUA_1G11280 AFUA_1G11300 AFUA_1G11320 AFUA_1G11330 AFUA_1G11340 AFUA_1G11350 AFUA_1G11360 AFUA_1G11370 AFUA_1G14520 AFUA_1G14530 AFUA_1G14540 AFUA_2G00720 AFUA_2G00750 AFUA_2G04480 AFUA_2G04490 AFUA_2G04520 AFUA_2G04533 AFUA_2G05150 AFUA_2G06205 AFUA_2G06330 AFUA_2G07440 AFUA_2G07710 AFUA_2G08670 AFUA_2G09490 AFUA_2G10360 AFUA_2G10370 AFUA_2G12710 AFUA_2G13295 AFUA_2G17610 AFUA_2G17620 AFUA_2G18070 AFUA_3G01280 AFUA_3G01290 AFUA_3G03540 AFUA_3G04300 AFUA_3G07850 Function Pfs, NACHT and Ankyrin domains protein NACHT domain protein alpha-L-rhamnosidase A, putative formaldehyde dehydrogenase, putative branched-chain amino acid aminotransferase cytochrome P450 alkane hydroxylase, putative 37S ribosomal protein Mrp10, mitochondrial eukaryotic translation initiation factor 3 subunit EifCa, putative erythromycin esterase, putative Peptidase M28 family Fe-containing alcohol dehydrogenase, putative aconitate hydratase, mitochondrial oxidoreductase, putative methyltransferase, putative class II DAHP synthetase family protein lactonohydrolase, putative glycosyl hydrolase family 88, putative MFS transporter of unkown specificity aldehyde reductase II versicolorin B synthase, putative pyridine nucleotide-disulphide oxidoreductase, putative general amidase, putative oxidoreductase, short-chain dehydrogenase/reductase family aldehyde dehydrogenase, putative oxidoreductase, 2OG-Fe(II) oxygenase family, putative xylosidase/arabinosidase, putative D-3-phosphoglycerate dehydrogenase Fe-containing alcohol dehydrogenase, putative Bys1 family protein cell wall galactomannoprotein Mp2/allergen F17-like yippee family protein ubiquitin C-terminal hydrolase, putative thioesterase family protein mRNA splicing factor RNA helicase (Cdc28), putative acetyl-CoA carboxylase eukaryotic translation initiation factor subunit eIF-4F, putative kynureninase iron-sulfur cluster assembly accessory protein Isa2, putative MFS monocarboxylate transporter, putative aminotransferase family protein (LolT), putative sulfatase domain protein cellobiose dehydrogenase metalloproteinase, putative alpha/beta hydrolase, putative AMID-like mitochondrial oxidoreductase, putative PKS-like enzyme, putative actin cytoskeleton organization and biogenesis protein, putative pheromone maturation dipeptidyl aminopeptidase DapB AFUA_3G07860 AFUA_3G08120 AFUA_3G09450 AFUA_3G11840 AFUA_3G14680 AFUA_3G14690 AFUA_3G15300 AFUA_3G15350 AFUA_3G15390 AFUA_4G00610 AFUA_4G00620 AFUA_4G03510 AFUA_4G04820 AFUA_4G06420 AFUA_4G07710 AFUA_4G09420 AFUA_4G09440 AFUA_4G09560 AFUA_4G13770 AFUA_4G13780 AFUA_4G13800 AFUA_4G14130 AFUA_4G14560 AFUA_5G01680 AFUA_5G01700 AFUA_5G01710 AFUA_5G03960 AFUA_5G04440 AFUA_5G06800 AFUA_5G06840 AFUA_5G07510 AFUA_5G07570 AFUA_5G07580 AFUA_5G09980 AFUA_5G09990 AFUA_5G10120 AFUA_5G13190 AFUA_6G00440 AFUA_6G00450 AFUA_6G01860 AFUA_6G01900 AFUA_6G03480 AFUA_6G03630 AFUA_6G05350 AFUA_6G06350 AFUA_6G08640 AFUA_6G09590 AFUA_6G09600 AFUA_6G09610 AFUA_6G09650 AFUA_6G09660 AFUA_6G09720 glycosyl transferase, putative PWI domain mRNA processing protein, putative alpha/beta fold family hydrolase, putative NAD binding Rossmann fold oxidoreductase, putative lysophospholipase Plb3 aminotransferase, putative amine transporter, putative short chain dehydrogenase family protein, putative MFS transporter, putative aryl-alcohol dehydrogenase, putative cell wall glycosyl hydrolase Dfg5, putative amino acid permease family protein, putative C-4 methyl sterol oxidase Erg25, putative fungal specific transcription factor, putative pyruvate carboxylase, putative carbonic anhydrase, putative sodium P-type ATPase, putative ZIP Zinc transporter, putative glycosyl hydrolase, putative polyphenol monooxygenase, putative extracellular sialidase/neuraminidase, putative ABC multidrug transporter, putative polyketide synthase, putative MFS transporter, putative C6 transcription factor, putative cytochrome P450 phenylacetate 2-hydroxylase, putative class V chitinase Chi100 nucleolar RNAse III, putative C6 transcription factor, putative class V chitinase, putative C6 transcription factor AlcR pyruvate carboxylase, putative methylmalonyl-CoA decarboxylase, alpha subunit, putative acyl-CoA dehydrogenase, putative C6 transcription factor, putative NRPS-like enzyme, putative kinesin family protein cation diffusion facilitator, putative feruloyl esterase, putative MFS lactose permease, putative flavin-binding monooxygenase-like protein nonribosomal peptide synthase, putative very-long-chain acyl-CoA synthetase family protein (CefD1), putative aspartic-type endopeptidase (OpsB), putative proteasome subunit alpha type 3, putative metallopeptidase Mip1 zinc alcohol dehydrogenase, putative zinc metallopeptidase, putative nonribosomal peptide synthase, putative membrane dipeptidase GliJ nonribosomal peptide synthase GliP methyltransferase GliN AFUA_6G09730 AFUA_6G09740 AFUA_6G10100 AFUA_6G10120 AFUA_6G11580 AFUA_6G11630 AFUA_6G11910 AFUA_6G11920 AFUA_6G13120 AFUA_6G13450 AFUA_6G14550 AFUA_7G00160 AFUA_7G01810 AFUA_7G01820 AFUA_7G02290 AFUA_7G02310 AFUA_7G05080 AFUA_7G05090 AFUA_7G05100 AFUA_7G06140 AFUA_7G06900 AFUA_7G08340 AFUA_7G08350 AFUA_8G02060 AFUA_8G02200 AFUA_8G02260 AFUA_8G02810 AFUA_8G02820 AFUA_8G02860 AFUA_8G06470 AFUA_8G06820 cytochrome P450 oxidoreductase GliF thioredoxin reductase GliT MFS monocarboxylate transporter, putative zinc-binding oxidoreductase ToxD, putative carboxy-cis,cis-muconate cyclase, putative FAD-dependent isoamyl alcohol oxidase, putative glycosyl hydrolase family 3, putative MFS alpha-glucoside transporter, putative filament-forming protein (Tpr/p270), putative nitrilase xylosidase/arabinosidase, putative polyketide synthase, putative C6 transcription factor, putative C6 transcription factor, putative ER glycosyl hydrolase (Edem), putative adenine phosphoribosyltransferase 1 C6 transcription factor, putative glucuronyl hydrolase, putative hexose transporter protein beta-D-glucoside glucohydrolase branched-chain amino acid aminotransferase, putative subtilisin-like alkaline protease, putative alpha-1,3-glucanase, putative glycan biosynthesis protein (PigL), putative proline permease, putative neutral amino acid permease ELMO/CED-12 family protein cell cycle checkpoint protein Rad17, putative AMP deaminase Amd1, putative N,N-dimethylglycine oxidase, putative dihydrofolate reductase family protein
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