Download Supplemental Table 3. Previously defined 344 gene atherosclerosis

Supplemental Table 3. Previously defined 344 gene atherosclerosis gene signature
Gene
Symbol
FCGR2A
Gene Name
Fc fragment of IgG, low affinity IIa, receptor (CD32)
KCNJ2
STX3
TLR8
ACSL1
CLEC4E
TLR8
TLR4
TM6SF1
CASP4
NAMPT
FPRL1
LOC399744
QPCT
MCL1
P2RY13
TNFSF14
IL1R2
TGFA
LOC730820
ABLIM1
GK
GPR97
VNN2
STX11
CA4
TLR2
MME
FLJ20273
RAB24
TNFRSF10B
IL1RN
IL1B
FAM126B
TLR6
CPD
MGAM
ENTPD1
potassium inwardly-rectifying channel, subfamily J, member 2
syntaxin 3
toll-like receptor 8
acyl-CoA synthetase long-chain family member 1
C-type lectin domain family 4, member E
toll-like receptor 8
toll-like receptor 4
transmembrane 6 superfamily member 1
caspase 4, apoptosis-related cysteine peptidase
nicotinamide phosphoribosyltransferase
formyl peptide receptor 2
hypothetical LOC399744
glutaminyl-peptide cyclotransferase
myeloid cell leukemia sequence 1 (BCL2-related)
purinergic receptor P2Y, G-protein coupled, 13
tumor necrosis factor (ligand) superfamily, member 14
interleukin 1 receptor, type II
transforming growth factor, alpha
NA
actin binding LIM protein 1
glycerol kinase
G protein-coupled receptor 97
vanin 2
syntaxin 11
carbonic anhydrase IV
toll-like receptor 2
membrane metallo-endopeptidase
RNA binding motif protein 47
RAB24, member RAS oncogene family
tumor necrosis factor receptor superfamily, member 10b
interleukin 1 receptor antagonist
interleukin 1, beta
family with sequence similarity 126, member B
toll-like receptor 6
carboxypeptidase D
maltase-glucoamylase (alpha-glucosidase)
ectonucleoside triphosphate diphosphohydrolase 1
LRG1
NFIL3
FFAR2
SMARCD3
ROPN1L
LAMP2
FAIM3
B4GALT5
MYBPC3
EIF4E3
CREB5
LIMK2
CSF2RB
LILRA5
MAPK14
KCNJ15
STEAP4
NCF4
GNG10
PILRA
SIRPB1
CDC25B
FRAT1
RAB24
CEACAM3
NCF4
TLR1
CCDC64
MEFV
MOSC1
SNAP23
WDFY3
GAB2
ABHD5
EGLN1
BEST1
PHC2
LOC339745
IL6R
ZNF438
KBTBD7
leucine-rich alpha-2-glycoprotein 1
nuclear factor, interleukin 3 regulated
free fatty acid receptor 2
SWI/SNF related, matrix associated, actin dependent regulator of chromatin,
subfamily d, member 3
ropporin 1-like
lysosomal-associated membrane protein 2
Fas apoptotic inhibitory molecule 3
UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5
myosin binding protein C, cardiac
eukaryotic translation initiation factor 4E family member 3
cAMP responsive element binding protein 5
LIM domain kinase 2
colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)
leukocyte immunoglobulin-like receptor, subfamily A (with TM domain),
member 5
mitogen-activated protein kinase 14
potassium inwardly-rectifying channel, subfamily J, member 15
STEAP family member 4
neutrophil cytosolic factor 4, 40kDa
guanine nucleotide binding protein (G protein), gamma 10
paired immunoglobin-like type 2 receptor alpha
signal-regulatory protein beta 1
cell division cycle 25 homolog B (S. pombe)
frequently rearranged in advanced T-cell lymphomas
RAB24, member RAS oncogene family
carcinoembryonic antigen-related cell adhesion molecule 3
neutrophil cytosolic factor 4, 40kDa
toll-like receptor 1
coiled-coil domain containing 64
Mediterranean fever
MOCO sulphurase C-terminal domain containing 1
synaptosomal-associated protein, 23kDa
WD repeat and FYVE domain containing 3
GRB2-associated binding protein 2
abhydrolase domain containing 5
egl nine homolog 1 (C. elegans)
bestrophin 1
polyhomeotic homolog 2 (Drosophila)
speckle-type POZ protein-like
interleukin 6 receptor
zinc finger protein 438
kelch repeat and BTB (POZ) domain containing 7
FRAT1
PLXNC1
UBE2L6
NTNG2
CD27
RCN3
LOC729021
NAMPT
SIPA1L2
FAM53C
PIK3IP1
REM2
HCG27
GPR97
CLEC7A
MAG1
MANSC1
EMR3
PELI1
MAP4K1
IL8RB
CSF3R
KIAA0125
DYSF
CREB5
HK2
KLHL2
SELM
ST8SIA4
LDLRAP1
IL1R2
PLAUR
RAB11FIP1
ELL
TSEN34
IDS
OSM
BTBD14A
TIMP2
DKFZp761E
198
NCF1
MAPK14
frequently rearranged in advanced T-cell lymphomas
plexin C1
ubiquitin-conjugating enzyme E2L 6
netrin G2
CD27 molecule
reticulocalbin 3, EF-hand calcium binding domain
hypothetical protein LOC729021
nicotinamide phosphoribosyltransferase
signal-induced proliferation-associated 1 like 2
family with sequence similarity 53, member C
phosphoinositide-3-kinase interacting protein 1
RAS (RAD and GEM)-like GTP binding 2
HLA complex group 27
G protein-coupled receptor 97
C-type lectin domain family 7, member A
1-acylglycerol-3-phosphate O-acyltransferase 9
MANSC domain containing 1
egf-like module containing, mucin-like, hormone receptor-like 3
pellino homolog 1 (Drosophila)
mitogen-activated protein kinase kinase kinase kinase 1
interleukin 8 receptor, beta
colony stimulating factor 3 receptor (granulocyte)
KIAA0125
dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)
cAMP responsive element binding protein 5
hexokinase 2
kelch-like 2, Mayven (Drosophila)
selenoprotein M
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4
low density lipoprotein receptor adaptor protein 1
interleukin 1 receptor, type II
plasminogen activator, urokinase receptor
RAB11 family interacting protein 1 (class I)
elongation factor RNA polymerase II
tRNA splicing endonuclease 34 homolog (S. cerevisiae)
iduronate 2-sulfatase
oncostatin M
NACC family member 2, BEN and BTB (POZ) domain containing
TIMP metallopeptidase inhibitor 2
DKFZp761E198 protein
neutrophil cytosolic factor 1
mitogen-activated protein kinase 14
PLAUR
MOSPD2
NPL
DOCK5
IKIP
ACOX1
HIATL1
ZDHHC18
PILRA
KIAA0319L
RNF122
CSF2RA
IRAK3
IL8RA
ST3GAL4
PTGS2
MAGED1
FAM113B
ST6GALNA
C2
USP32
TSHZ3
SLC22A4
C3orf62
C16orf57
KIAA0746
ATP6V0E2
TLR5
ABHD3
ADM
HPCAL4
LST1
ST8SIA4
STAT3
DIRC2
NADK
DUSP1
LAT2
TNFSF14
C14orf138
ANXA3
plasminogen activator, urokinase receptor
motile sperm domain containing 2
N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)
dedicator of cytokinesis 5
IKK interacting protein
acyl-Coenzyme A oxidase 1, palmitoyl
hippocampus abundant transcript-like 1
zinc finger, DHHC-type containing 18
paired immunoglobin-like type 2 receptor alpha
KIAA0319-like
ring finger protein 122
colony stimulating factor 2 receptor, alpha, low-affinity (granulocytemacrophage)
interleukin-1 receptor-associated kinase 3
interleukin 8 receptor, alpha
ST3 beta-galactoside alpha-2,3-sialyltransferase 4
prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and
cyclooxygenase)
melanoma antigen family D, 1
family with sequence similarity 113, member B
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-Nacetylgalactosaminide alpha-2,6-sialyltransferase 2
ubiquitin specific peptidase 32
teashirt zinc finger homeobox 3
solute carrier family 22 (organic cation/ergothioneine transporter), member 4
chromosome 3 open reading frame 62
chromosome 16 open reading frame 57
KIAA0746 protein
ATPase, H+ transporting V0 subunit e2
toll-like receptor 5
abhydrolase domain containing 3
adrenomedullin
hippocalcin like 4
leukocyte specific transcript 1
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4
signal transducer and activator of transcription 3 (acute-phase response factor)
disrupted in renal carcinoma 2
NAD kinase
dual specificity phosphatase 1
linker for activation of T cells family, member 2
tumor necrosis factor (ligand) superfamily, member 14
chromosome 14 open reading frame 138
annexin A3
PTPRCAP
PLCG1
C20orf3
GPR109B
C9orf72
DGKA
DENND3
REPS2
PYGL
PTAFR
SKAP2
TMEM157
FAM102A
LOC728014
MAK
GPR109A
CENTD3
BIN1
PLXDC2
PANX2
PSG3
E2F3
SIPA1L1
SLC43A2
MMP25
INADL
SLCO3A1
IRS2
BCL11B
RP2
EDG4
HSPA6
IL6R
TREM1
CASP8
SEC14L1
GNAQ
Rgr
C10orf38
TCF4
TTC27
IBRDC2
EVA1
protein tyrosine phosphatase, receptor type, C-associated protein
phospholipase C, gamma 1
chromosome 20 open reading frame 3
niacin receptor 2
chromosome 9 open reading frame 72
diacylglycerol kinase, alpha 80kDa
DENN/MADD domain containing 3
RALBP1 associated Eps domain containing 2
phosphorylase, glycogen, liver
platelet-activating factor receptor
src kinase associated phosphoprotein 2
family with sequence similarity 174, member A
family with sequence similarity 102, member A
NA
male germ cell-associated kinase
niacin receptor 1
ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3
bridging integrator 1
plexin domain containing 2
pannexin 2
pregnancy specific beta-1-glycoprotein 3
E2F transcription factor 3
signal-induced proliferation-associated 1 like 1
solute carrier family 43, member 2
matrix metallopeptidase 25
InaD-like (Drosophila)
solute carrier organic anion transporter family, member 3A1
insulin receptor substrate 2
B-cell CLL/lymphoma 11B (zinc finger protein)
retinitis pigmentosa 2 (X-linked recessive)
lysophosphatidic acid receptor 2
heat shock 70kDa protein 6 (HSP70B')
interleukin 6 receptor
triggering receptor expressed on myeloid cells 1
caspase 8, apoptosis-related cysteine peptidase
SEC14-like 1 (S. cerevisiae)
guanine nucleotide binding protein (G protein), q polypeptide
ral guanine nucleotide dissociation stimulator-like 4
family with sequence similarity 171, member A1
transcription factor 4
tetratricopeptide repeat domain 27
ring finger protein 144B
myelin protein zero-like 2
SPTAN1
CRISPLD2
CXCL16
TMCC3
RAB20
COBLL1
CDR2
ECHDC2
SUSD3
GIMAP5
WSB1
VNN3
C9orf164
RAB11FIP1
DPEP3
BCAS4
AMD1
ITM2C
GPR177
SASP
SKAP1
CXXC5
GNAI3
LY9
RRAGD
SLC9A8
CCR7
KLHL3
ARRDC3
C5AR1
FCGR3B
CLIC1
ITPR3
MGC4093
C3orf34
ATG16L2
DKFZp434K
1815
CUEDC1
RASGRP3
PSTPIP2
PROK2
spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)
cysteine-rich secretory protein LCCL domain containing 2
chemokine (C-X-C motif) ligand 16
transmembrane and coiled-coil domain family 3
RAB20, member RAS oncogene family
COBL-like 1
cerebellar degeneration-related protein 2, 62kDa
enoyl Coenzyme A hydratase domain containing 2
sushi domain containing 3
GTPase, IMAP family member 5
WD repeat and SOCS box-containing 1
vanin 3
NA
RAB11 family interacting protein 1 (class I)
dipeptidase 3
breast carcinoma amplified sequence 4
adenosylmethionine decarboxylase 1
integral membrane protein 2C
G protein-coupled receptor 177
aspartic peptidase, retroviral-like 1
src kinase associated phosphoprotein 1
CXXC finger 5
guanine nucleotide binding protein (G protein), alpha inhibiting activity
polypeptide 3
lymphocyte antigen 9
Ras-related GTP binding D
solute carrier family 9 (sodium/hydrogen exchanger), member 8
chemokine (C-C motif) receptor 7
kelch-like 3 (Drosophila)
arrestin domain containing 3
complement component 5a receptor 1
Fc fragment of IgG, low affinity IIIb, receptor (CD16b)
chloride intracellular channel 1
inositol 1,4,5-triphosphate receptor, type 3
B9 protein domain 2
chromosome 3 open reading frame 34
ATG16 autophagy related 16-like 2 (S. cerevisiae)
leucine-rich repeats and WD repeat domain containing 1
CUE domain containing 1
RAS guanyl releasing protein 3 (calcium and DAG-regulated)
proline-serine-threonine phosphatase interacting protein 2
prokineticin 2
PADI4
ZNF467
LOC340527
ARID3A
SMPDL3A
DUSP6
BLR1
C9orf45
STXBP5
C5orf32
FCER2
PKN2
F5
MAN2C1
HSDL2
DOCK10
ITK
ZAP70
RNF141
ID3
NOTCH1
AFF3
TIMP2
DSC2
GBP2
WWC3
ALPL
CD79A
TMEM127
C11orf75
CYP4F3
NLRP12
ADARB1
ERGIC1
PARP9
CD6
PXN
CEACAM1
PISD
C13orf15
LOC728776
USP15
PGLYRP1
peptidyl arginine deiminase, type IV
zinc finger protein 467
NHS-like 2
AT rich interactive domain 3A (BRIGHT-like)
sphingomyelin phosphodiesterase, acid-like 3A
dual specificity phosphatase 6
chemokine (C-X-C motif) receptor 5
NA
syntaxin binding protein 5 (tomosyn)
chromosome 5 open reading frame 32
Fc fragment of IgE, low affinity II, receptor for (CD23)
protein kinase N2
coagulation factor V (proaccelerin, labile factor)
mannosidase, alpha, class 2C, member 1
hydroxysteroid dehydrogenase like 2
dedicator of cytokinesis 10
IL2-inducible T-cell kinase
zeta-chain (TCR) associated protein kinase 70kDa
ring finger protein 141
inhibitor of DNA binding 3, dominant negative helix-loop-helix protein
Notch homolog 1, translocation-associated (Drosophila)
AF4/FMR2 family, member 3
TIMP metallopeptidase inhibitor 2
desmocollin 2
guanylate binding protein 2, interferon-inducible
WWC family member 3
alkaline phosphatase, liver/bone/kidney
CD79a molecule, immunoglobulin-associated alpha
transmembrane protein 127
chromosome 11 open reading frame 75
cytochrome P450, family 4, subfamily F, polypeptide 3
NLR family, pyrin domain containing 12
adenosine deaminase, RNA-specific, B1 (RED1 homolog rat)
endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1
poly (ADP-ribose) polymerase family, member 9
CD6 molecule
paxillin
carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)
phosphatidylserine decarboxylase
chromosome 13 open reading frame 15
high-mobility group nucleosome binding domain 1 pseudogene
ubiquitin specific peptidase 15
peptidoglycan recognition protein 1
BLK
RPS8
CDCA7L
VPREB3
CASP8
TNFAIP2
DHX34
USP10
LOC201175
S100A12
TLE3
ZNF101
LEF1
OAZ2
BCL2
CD302
CD79A
HOOK1
PGAM1
PDE7A
ST3GAL6
PGD
SOD2
PACSIN1
FOS
PTPRC
ZNF121
OKL38
TREML2
PIK3AP1
CD3E
C16orf7
EPHX2
BCL11A
FBXL13
CDA
UBN1
PPAPDC1B
S100P
HIST1H2AC
BIRC3
HSD17B11
LPPR2
B lymphoid tyrosine kinase
ribosomal protein S8
cell division cycle associated 7-like
pre-B lymphocyte 3
caspase 8, apoptosis-related cysteine peptidase
tumor necrosis factor, alpha-induced protein 2
DEAH (Asp-Glu-Ala-His) box polypeptide 34
ubiquitin specific peptidase 10
SH3 domain containing 20
S100 calcium binding protein A12
transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)
zinc finger protein 101
lymphoid enhancer-binding factor 1
ornithine decarboxylase antizyme 2
B-cell CLL/lymphoma 2
CD302 molecule
CD79a molecule, immunoglobulin-associated alpha
hook homolog 1 (Drosophila)
phosphoglycerate mutase 1 (brain)
phosphodiesterase 7A
ST3 beta-galactoside alpha-2,3-sialyltransferase 6
phosphogluconate dehydrogenase
superoxide dismutase 2, mitochondrial
protein kinase C and casein kinase substrate in neurons 1
FBJ murine osteosarcoma viral oncogene homolog
protein tyrosine phosphatase, receptor type, C
zinc finger protein 121
oxidative stress induced growth inhibitor 1
triggering receptor expressed on myeloid cells-like 2
phosphoinositide-3-kinase adaptor protein 1
CD3e molecule, epsilon (CD3-TCR complex)
chromosome 16 open reading frame 7
epoxide hydrolase 2, cytoplasmic
B-cell CLL/lymphoma 11A (zinc finger protein)
F-box and leucine-rich repeat protein 13
cytidine deaminase
ubinuclein 1
phosphatidic acid phosphatase type 2 domain containing 1B
S100 calcium binding protein P
histone cluster 1, H2ac
baculoviral IAP repeat-containing 3
hydroxysteroid (17-beta) dehydrogenase 11
lipid phosphate phosphatase-related protein type 2
KIAA0319L
SRPK1
LHFPL2
BST1
RNF24
CFP
RPS5
SLC19A1
GBP1
ALDH16A1
FKBP1A
CD93
SESN1
KIAA0319-like
SFRS protein kinase 1
lipoma HMGIC fusion partner-like 2
bone marrow stromal cell antigen 1
ring finger protein 24
complement factor properdin
ribosomal protein S5
solute carrier family 19 (folate transporter), member 1
guanylate binding protein 1, interferon-inducible, 67kDa
aldehyde dehydrogenase 16 family, member A1
FK506 binding protein 1A, 12kDa
CD93 molecule
sestrin 1