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Table S7. Genes significantly changed in both early acute and late acute phases vs convalescent phase (HG-focus platform) Probeset ID Gene Symbol 200986_at SERPING1 201761_at MTHFD2 202086_at MX1 202270_at GBP1 202411_at IFI27 203153_at 203413_at 203485_at 204415_at 204439_at 205483_s_at 205692_s_at 205987_at IFIT1 NELL2 RTN1 IFI6 IFI44L ISG15 CD38 CD1C 206632_s_at 208546_x_at 209457_at APOBEC3B HIST1H2BH DUSP5 210356_x_at 211506_s_at MS4A1 IL8 213348_at 214453_s_at 217933_s_at 219211_at CDKN1C IFI44 LAP3 USP18 219714_s_at CACNA2D3 33304_at 39318_at ISG20 TCL1A Gene Title serpin peptidase inhibitor, clade G (C1 inhibitor), member 1 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate c myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse) guanylate binding protein 1, interferon-inducible, 67kDa interferon, alpha-inducible protein 27 interferon-induced protein with tetratricopeptide repeats 1 NEL-like 2 (chicken) reticulon 1 interferon, alpha-inducible protein 6 interferon-induced protein 44-like ISG15 ubiquitin-like modifier CD38 molecule CD1c molecule apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B histone cluster 1, H2bh dual specificity phosphatase 5 membrane-spanning 4-domains, subfamily A, member 1 interleukin 8 cyclin-dependent kinase inhibitor 1C (p57, Kip2) interferon-induced protein 44 leucine aminopeptidase 3 ubiquitin specific peptidase 18 calcium channel, voltagedependent, alpha 2/delta subunit 3 interferon stimulated exonuclease gene 20kDa T-cell leukemia/lymphoma 1A FoldFoldp-value(Early Change(Early p-value(Late Change(Late Acute vs. Acute vs. Acute vs. Acute vs. Convalenscent) Convalenscent) Convalenscent) Convalenscent) 4.94E-32 17.6595 1.87E-12 2.5085 4.29E-29 2.86554 1.35E-30 2.0255 5.36E-40 9.23324 8.38E-25 2.50172 8.67E-22 5.70295 1.34E-14 2.36355 4.25E-41 80.6469 0 46.6463 2.42E-27 4.36E-32 2.23E-17 2.33E-25 3.70E-28 2.46E-36 3.85E-12 8.86E-29 19.5124 -4.15378 -2.3478 5.09775 11.462 12.8609 2.9135 -2.36105 9.89E-09 3.76E-28 6.96E-36 5.04E-16 5.48E-16 1.56E-18 2.24E-39 8.66E-40 2.30327 -2.275 -2.78108 2.08142 2.78656 2.55293 6.38218 -2.13861 2.07E-08 7.58E-12 9.07E-09 3.68803 2.22424 2.11966 1.74E-16 8.15E-18 2.65E-16 3.90992 2.01469 2.167 4.62E-15 0.00828182 -2.82757 -2.27685 6.95E-23 9.14E-08 -2.48645 -3.10191 4.02E-10 4.20E-29 1.49E-28 6.37E-39 2.82932 5.94045 4.1109 7.77166 2.34E-17 5.79E-17 5.62E-22 1.46E-22 -2.7351 2.12358 2.1091 2.23566 7.57E-22 -2.52456 1.37E-38 -2.72636 2.17E-29 1.97E-12 3.19432 -2.31849 4.65E-28 2.78E-18 2.06759 -2.03062