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Supplementary Table S1: Cis-regulatory elements identified in the promoter region of HbMVD from the latex of rubber tree.
Functional
Frequency of
Site name
Signal sequence
types
Function
occurrence
-300ELEMENT
TGHAAARK
1
Enhancer and tissue-specific element
2SSEEDPROTBANAPA
CAAACAC
1
Storage-protein specific element
CAATBOX1
CAAT
34
Tissue specific promoter
CACTFTPPCA1
YACT
38
Elements for mesophyll specific gene expression in the C4 plant
CARGCW8GAT
CWWWWWWWWG
8
Binding site for AGL15 (AGAMOUS-like 1)
EECCRCAH1
GANTTNC
5
Binding site of ERKY1 and WRKY 2
GTGANTG10
GTGA
17
Pollen expression related element
MARABOX1
AATAAAYAAA
2
Function as transcriptional activators in abscisic acid signaling
MARTBOX
TTWTWTTWTT
2
T-Box, motif found in SAR (scaffold attachment region) or MAR (matrix attachment region)
NAPINMOTIFBN
TACACAT
1
Upstream region of genes encoding seed storage protein
NODCON1GM
AAAGAT
3
Putative nodulin consensus sequences
NODCON2GM
CTCTT
9
Nodule specific element
OSE1ROOTNODULE
AAAGAT
3
Root nodules specifically element
POLASIG1
AATAAA
14
PolyA signal
Transcriptional
POLASIG2
AATTAAA
6
PolyA signal
regulation
POLASIG3
AATAAT
16
PolyA signal
PROXBBNNAPA
CAAACACC
1
Required for seed specific expression and ABA responsiveness
PYRIMIDINEBOXOSRAMY1A
CCTTTT
1
Cis-element of GARE
QELEMENTZMZM13
AGGTCA
1
Expression enhancing activity
RAV1BAT
CACCTG
1
Related with root and leaf specific expression
RYREPEATLEGUMINBOX
CATGCAY
1
Tissue- specific and temporal regulation
S1FBOXSORPS1L21
ATGGTA
2
Regulate the plastid ribosomal protein S1 and L21
TAAAGSTKST1
TAAAG
8
Target site for trans-acting SrDof1 protein controlling guard cell-specific gene expression
TATABOX2
TATAAAT
1
Core promoter element
TATABOX3
TATTAAT
6
Core promoter element
TATABOX4
TATATAA
3
Core promoter element
TATABOX5
TTATTT
19
Core promoter element
TATABOXOSPAL
TATTTAA
8
Binding site for OsTBP2
TRANSINITMONOCOTS
RMNAUGGC
1
Sequence related to translation
WBBOXPCWRKY1
TTTGACY
1
WRKY binding site
WUSATAg
TTAATGG
2
Target sequence of WUS in the intron of AGAMOUS gene in Arabidopsis
ACGTATERD1
ACGT
2
Dehydration stress responsive element
ANAERO1CONSENSUS
AAACAAA
2
Anaerobic responsive element
ANAERO3CONSENSUS
TCATCAC
2
Anaerobic responsive element
BIHD1OS
TGTCA
2
Disease resistance response
CCAATBOX1
CCAAT
5
Heat shock signals responsive element
CURECORECR
GTAC
12
Copper responsive element
DOFCOREZM
AAAG
27
Cis-acting element involved in defense and stress responsiveness
ELRECOREPCRP1
TTGACC
2
Disease resistance
GT1GMSCAM4
GAAAAA
6
Regulation of late pollen genes
LTRE1HVBLT49
CCGAAA
2
Low-temperature-responsive element
MYB1AT
WAACCA
6
Dehydration response
MYB2AT
TAACTG
1
Water stress
MYB2CONSENSUSAT
YAACKG
2
Dehydration induced element
Defense
MYBCORE
CNGTTR
4
Water stress; flavonoid biosynthesis
response
MYBCOREATCYCB1
AACGG
1
Activate reporter gene without leading to M-phase-specific expression
MYBPLANT
MACCWAMC
2
Phenylpropanoid and lignin biosynthesis
MYBPZM
CCWACC
3
MYB binding site involved in drought-inducibility
MYBST1
GGATA
5
Pathogen and salt induced elements
MYCATERD1
CATGTG
2
Early responsive to dehydration
MYCATRD22
CACATG
2
Dehydration responsive elements
MYCCONSENSUSAT
CANNTG
24
Cold induced response element
OSE2ROOTNODULE
CTCTT
9
Pathogen-induced response element
PREATPRODH
ACTCAT
4
Pro- or hypoosmolarity-responsive element
SEBFCONSSTPR10A
YTGTCWC
1
Factor (SEBF) pathogenesis-related gene (PR-10a) promoter
SP8BFIBSP8BIB
TACTATT
2
SPBF binding site
WBOXATNPR1
TTGAC
4
Disease resistance related element
WBOXHVISO1
TGACT
3
Regulate NPR1,salicylic acid (SA)-induced
WBOXNTCHN48
CTGACY
1
W box, elicitor-respsonsive transcription
WBOXNTERF3
TGACY
10
Wound responsive elements
ARFAT
TGTCTC
1
Auxin responsive element
ARR1AT
NGATT
40
Cytokinin-regulated transcription factor binding site
ASF1MOTIFCAMV
TGACG
1
MeJA-responsiveness element
CAREOSREP1
CAACTC
2
Gibberellin up-regulated proteinase expression
CATATGGMSAUR
CATATG
2
Auxin response factor binding site
CPBCSPOR
TATTAG
1
Cytokinins responsive element in vital
Hormone
GAREAT
TAACAAR
2
Gibberellin induced element
response
LECPLEACS2
TAAAATAT
2
Core element in LeCp (tomato Cys protease) binding cis-element of LeAcs2 gene
MYBGAHV
TAACAAA
1
Central element of gibberellin response complex
NTBBF1ARROLB
ACTTTA
2
Tissue-specific expression and auxin induction
RYREPEATBNNAPA
CATGCA
2
Dependent response to ABA
SURECOREATSULTR11
GAGAC
2
Core of sulfur-responsive element (SURE) involved auxin response
TATCCAOSAMY
TATCCA
1
Mediate sugar and hormone regulation of alpha-amylase gene expression
WRKY71OS
TGAC
13
Gibberellin signaling pathway related element
-10PEHVPSBD
TATTCT
4
Relevant to circadian rhythms, light regulation
BOXIINTPATPB
ATAGAA
3
Important for the activity of this NCII (nonconsensus type II) promoter
BOXLCOREDCPAL
ACCWWCC
1
Core sequences of box-L-like sequences in carrot PALI promoter region
CCA1ATLHCB1
AAMAATCT
1
Phytoehrome regulation
CIACADIANLELHC
CAANNNNATC
3
Relevant to circadian expression
EBOXBNNAPA
CANNTG
24
E-box of NapA storage-protein gene
GATABOX
GATA
27
Related to the light accommodation and tissue-specific expression with high conservation
GT1CONSENSUS
GRWAAW
20
Light induced element
GT1CORE
GGTTAA
1
Critical for GT-1 binding to box II of rbcS
Light signal
HDZIP2ATATHB2
TAATMATTA
1
Light signal response
transduction
IBOX
GATAAG
3
Related with light induction and green tissue specific expression
IBOXCORE
GATAA
8
Related with light induction and green tissue specific expression
IBOXCORENT
GATAAGR
2
Associated with light-responsive promoter regions
INRNTPSADB
YTCANTYY
6
Inr (initiator) elements related with light induction
MYB26PS
GTTAGGTT
1
Biosynthesis of phenylpropanoids (pigments)
PRECONSCRHSP70A
SCGAYNRNNNNNNNNNNNNNNNHD
1
Plastid response element
RAV1AAT
CAACA
6
Related with root and leaf specific expression
RBCSCONSENSUS
AATCCAA
1
Conserved sequence of rbcS gene
REALPHALGLHCB21
AACCAA
5
Phytochrome regulatory elements
SORLIP1AT
GCCAC
1
Light-induced responsive element
AACACOREOSGLUB1
AACAAAC
1
Endosperm-specific expression regulatory elements
AMYBOX1
TAACARA
1
Conserved sequences in the promoter of α-amylase genes
CANBNNAPA
CNAACAC
1
Elements for embryo and endosperm specific transcription of storage protein gene, seed specificity
POLLEN1LELAT52
AGAAA
10
Pollen-specific elememt
Sugar, carbon
RHERPATEXPA7
KCACGW
2
Root hair cell-specific cis-element
and other
ROOTMOTIFTAPOX1
ATATT
29
Root expressed related element
metabolism
SEF1MOTIF
ATATTTAWW
2
SEF1 binding site
SEF3MOTIFGM
AACCCA
2
SEF3 binding site
SEF4MOTIFGM7S
RTTTTTR
7
SEF4 binding site
SREATMSD
TTATCC
2
Sugar-repressive element
TATCCAOSAMY
TATCCA
1
Mediate sugar and hormone regulation of alpha-amylase gene expression
Note: D = A/G/T, H = A/C/T, K = G/T, M = A/C, N = A/C/G/T, R = A/G, S = C/G, W = A/T, Y = C/T