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Supplementary information:
SI1: (Supplementary information): Annotation of newly sequenced phages, genes are divided in to four categories, viz structural
proteins, lysogeny module, lytic module and replication/recombination proteins (BLASTP and RAST were used for annotations).
Phage
Salmonella_
phage18India
Salmonella_
phage19India
Method of Structural Protein
annotation
tail I, capsid assembly protein,
TMP domain-containing
protein, phage terminase large
BLASTP subunit, putative tail tubular
protein B, cation trasporter E1E2 family ATPase, tail fiber
protein, head-to-tail joining
protein, portal protein, baseplate
hub subunit, baseplate hub
assembly catalyst, baseplate
wedge initiator, minor tail
protein
terminase small subunit,
terminase large subunit, major
capsid protein , tail protein,
putative phage portal protein,
capsid assembly protein,
putative tail measure protein,
baseplate wedge subunit, major
capsid gp23-like protein, phage
BLASTP minor capsid protein 2, phage
minor structural protein, capsid
assembly protein, TMP repeat
protein, T4-like portal protein,
baseplate wedge tail fiber
connector, tail fiber protein,
Lysogeny
module
viral integrase
family 1
Lytic module
Replication and Recombination
Endolysin,
Lysin, holin
DNA repair ATPase,
DNA polymerase, putative DNA
primase/helicase, putative
transcription initiation, factor IIB,
DNA primase/helicase
putative phage
integrase,
putative
bacteriophage
CI repressor
holin family protein,
lysozyme murein
hydrolase ,
puative cell wall
hydrolase/LysM protein
DNA primase/helicase, DNA/RNA
helicase (DEAD/DEAH box
family), DNA helicase, putative
transcriptional regulator, DNA
repair protein, DNA helicase
UvrD, DNA polymerase, putative
ssDNA binding protein, DNA
helicase, DNA ligase, RNA
polymerase binding protein,
adenine methyltransferase
distal long tail fiber assembly
catalyst, inhibitor of prohead
protease
Salmonella_
phage21India
Salmonella_
phage22India
BLASTP
BLASTP
major tail protein, head fiber
phage
protein, Phage tail length tapeintegrase
measure protein, terminase large
subunit, major capsid protein,
baseplate wedge initiator, minor
head protein, putative structural
protein, minor tail protein
putative lysin,
putative Cro/Cl-type
repressor,
rIIB protector from
prophage-induced early
lysis
fragment of single strand binding
protein, putative recombinase,
DNA-directed RNA polymerase
DNA helicase, DNA polymerase,
DNA methylase
coat protein, tail component
protein, terL gene product,Chain
A, putative phage tail spike
protein, head morphogeneis
protein, putative tail fiber,
terminase
endolysin
site-specific recombinase, DNA
replication protein, transcriptional
activator, essential recombination
function protein, DNA methyl
transferase
CIII protein ,
integrase ,
RAST
RAST
BLASTP
Salmonella_
phage34India
RAST
Phage capsid protein, Phage
portal protein, Phage outer
membrane lipoprotein Rz1,
Phage tail spike protein, Phage
terminase large subunit, Phage
antitermination protein Q, Phage
antitermination protein N
cII, Putative cI Phage holin
prophage
repressor
protein
Phage antitermination protein N, Phage
Phage antitermination protein Q, repressor
protein C2,
cII, Phage Rha
protein,
Putative cI
prophage
repressor
protein
TMP domain-containing
putative
protein, putative tail tape
bacteriophage
measure protein, putative major CI repressor,
tail shaft protein, Na(+)/H(+)
putative
antiporter
bacteriophage
CI repressor
Phage tail spike protein, Phage
capsid and scaffold, Phage
terminase small and large
subunit, Phage portal protein
Phage replicative DNA helicase,
Origin specific replication
initiation factor, Phage antiRecBCD 1
Phage NinB DNA recombination
Phage NinG rap recombination
essential recombination function
protein, Erf DNA recombinase
Phage holin,
Lysozyme,
Phage outer membrane
lytic protein Rz;
Endopeptidase
DNA recombinase, phageassociated
Phage NinG rap recombination,
Phage replicative DNA helicase,
Phage NinB DNA recombination,
putative holin,
Lambda Rz-like phage
lysis protein
DNA helicase, site-specific
recombinase, putative
recombination endonuclease,
putative recombination protein,
DNA replication protein,
bacteriophage transcriptional
activator;
BLASTP
Salmonella_
phage35India
RAST
Salmonella_
phage36India
BLASTP
Lambda gpB homolog,
bacteriophage head-to-tail
joining protein, Lambda gpW
homolog, bacteriophage head
decoration protein,
tail length tape-measure protein,
capsid assembly protein, tail
tape measure protein, putative
minor tail protein, tail sheath
monomer, long tail fiber
proximal subunit,
portal protein, pre-neck
appendage-like protein,
terminase small subunit, tail
fiber protein, coat protein, Klike protein, head outer
Phage tail length tape-measure
protein, Head-tail preconnector
protein GP5, Phage portal
protein, Phage terminase large
and small subunit, Phage portal
protein, Phage capsid and
scaffold
phage tape measure protein,
phage major capsid protein,
phage tail fiber, minor tail
protein, portal protein,
bacteriophage tail tip assembly
protein
viral integrase
family 4
Lysozyme,Endolysin,
holin family protein
A domain,
phage helicase, Site-specific
recombinase, putative
recombination associated protein
phage-associated DNA polymerase
I
DNA helicase
putative
integrase
RAST
BLASTP
Salmonella_
phage37India
RAST
Salmonella_
phage38India
Phage tail fibers, Phage capsid
and scaffold, Phage tail length
tape-measure protein 1,
Phage tail assembly protein,
Phage terminase small and large
subunit, Phage portal protein
bacteriophage portal protein,
terminase large subunit, tail
length tape measure protein,
putative tail component,
bacteriophage minor capsid
protein, phage minor structural
protein, tail protein P,
bacteriophage head-tail
assembly protein, long tail fiber
proximal subunit, putative tail
component K-like protein
Head-tail preconnector protein
GP5, Phage major capsid
protein, Phage tail length tapemeasure protein, Phage tail
fibers, Terminase large subunit,
probable transmembrane protein
Phage tail fibers, tail spike
protein, Phage tail fibers, Gp13
neck protein, Gp15 proximal tail
sheath stabilization protein,
gp21 prohead core, scaffold and
protease, Phage prohead
viral integrase
family 4
Phage lysin, Phage
lysozyme
Phage-associated recombinase,
DNA primase/helicase, phageassociated Single-stranded DNAbinding protein, Phage
recombination protein, DNA
helicase, phage-associated, sitespecific recombinase
Lysozyme, Endolysin
Primase, A domain, Site specific
recombinase, DNA methylase,
putative transcriptional regulator,
putative DNA-directed DNA
polymerase protein, family A,
clamp loader subunit, DNA
polymerase accessory protein
Cell wall-associated
hydrolases
DNA primase/helicase, phage
associated DNA polymerase,
phage-associated Gp33 T4-like late
promoter transcription accessory
protein, Single stranded DNAbinding protein
DNA-binding protein HU-beta
DNA polymerase, phageassociated, tRNA-Undetermined,
tRNA-Ser-GCT, tRNA-Tyr-GTA,
tRNA-Asn-GTT, tRNA-Met-CAT,
putative DNA repair/recombination
RAST
Salmonella_
phage39India
BLASTP
Salmonella_
phage40India
BLASTP
assembly protein, Gp23 major
head protein, Phage tail
completion protein, gp6
baseplate wedge subunit, Gp18
tail sheath protein, putative
Gp25 baseplate wedge subunit,
gp19 tail tube monomer, Gp17
terminase DNA packaging
enzyme large subunit,Gp20
portal vertex protein of head,
T4-like Phage baseplate wedge
component, Gp53 Phage head
completion protein, Membraneflanked domain
protein UvsY, DNA helicase,
Phage DNA polymerase clamp
loader subunit Gp62 Phage
endoribonulcease translational
repressor of early genes, regA,
DNA helicase, phage-associated
Gp55 T4-like sigma factor
involved in late transcription, Gp46
Phage-associated DNA primase,
phage-associated DNA ligase,
phage-associated DNA
topoisomerase, phage-associated
putative histone-like protein
Phage tail length tape-measure
protein, phage morphogeneis
protein
putative tail tape measure
protein, putative tail fiber
protein, Putative structural
protein, bacteriophage side tail
fiber assembly protein, phage
capsid and scaffold protein,,
probable tail fiber protein,
Conserved structural protein
contains bacterial Ig-like and
Endonuclease,
lysin
putative
integrase
topoisomerase II, DNA ligase
RNA-DNA and DNA-DNA
helicase, ATPase, putative DNA
polymerase III, DNA repair
protein, DNA polymerase,
primase/helicase,RNA ligase 2,
Dcm methylase, DNA ligase, DNA
repair ATPase
invasin/intimin cell-adhesion
domain, terminase large subunit,
portal protein, baseplate wedge
initiator, baseplate tail tube
initiator, tail assembly
chaperone, putative
bacteriophage minor tail protein
RAST
Salmonella_
phage41India
BLASTP
Phage tail fiber assembly
protein, Phage tail length tapemeasure protein, Phage antitermination
Phage tail fiber protein,
bacteriophage portal protein,
phage capsid and scaffold
protein,
bacteriophage tail tip assembly
protein, putative tail tape
measure protein, terminase large
subunit, bacteriophage side tail
fiber assembly protein,
bacteriophage head decoration
protein, terL gene product
cl repressor,
Cro/Cl family
transcriptional
regulator
putative lysin
T7-like phage DNA Polymerase,
RnlB RNA ligase 2, DNA primase,
DNA helicas
holin
DNA ligase, restriction
endonuclease,
DNA gyrase subunit A, DNA
integration/recombination/invertion
protein, DNA polymerase I,
putative DNA primase, DNA
helicase UvrD,
phage nuclease