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Table S1. M. fusca RNA-seq data Description Entire flower buds not including pedicels; petals emerging Flower pedicels Mostly or fully expanded leaves from several nodes along stem including vegetative nodes near the base and flowering nodes closer to the apex Petioles from expanded leaves from several nodes along stem including vegetative nodes near the base and flowering nodes closer to the apex Flower petals ~1 week prior to anthesis1 Flower pistils ~1 week prior to anthesis Flower sepals ~1 week prior to anthesis Flower stamens ~1 week prior to anthesis Anthers at anthesis Stamen filaments at anthesis Basal section of pistils at anthesis Pollen at anthesis Stigmas from flowers at anthesis Styles from flowers at anthesis Fruit minus seeds ~1 week after anthesis Fertilized ovules ~1 week after anthesis Embryo dissected from seed 1 mm or less in diameter ~3 weeks after anthesis Data Set # Reads % of >= Q30 Bases Mean Quality R9_1 R9_2 R9_3 R10_1 R10_2 R10_3 R12_1 R12_2 R12_3 R14_1 R14_2 R14_3 R15_1 R15_2 R15_3 R16_1 R16_2 R16_3 R18_1 R18_2 R18_3 R19_1 R19_2 R19_3 R23_2 R23_3 R25_1 R25_3 R26_1 R26_2 R26_3 R28_2 R28_3 R31_1 R31_3 R32_3 R35_1 R35_3 R36_3 30,621,152 34,308,486 19,752,388 26,497,798 27,956,018 17,588,352 28,099,080 33,070,014 18,183,332 18,912,840 37,530,824 18,420,518 24,556,472 19,111,692 18,880,598 47,216,126 27,022,958 15,808,380 24,436,462 18,704,416 17,645,202 37,117,246 20,223,670 16,694,774 36,587,052 17,570,958 33,749,220 16,352,486 28,401,362 47,011,298 19,885,086 22,983,314 18,303,100 24,950,678 14,019,952 16,872,202 19,231,528 19,326,736 25,912,720 nd 80 85.22 nd 79.73 85.75 78.27 80.4 86.38 79.25 80.42 85.35 80.25 75.74 85.68 80.41 73.91 84.29 79.57 74.9 85.55 77.89 74.61 86.48 77.42 84.97 77.99 85.79 75.41 84.41 85.73 80.05 84.74 81.15 83.55 85.31 81.22 84.94 85.37 nd 32.28 33.87 nd 32.19 34.05 31.81 32.41 34.26 32.11 32.41 33.9 32.37 31.2 34.03 32.41 30.65 33.55 32.14 30.95 34.01 31.69 30.85 34.28 31.52 33.79 31.71 34.02 31.1 33.56 34.04 32.36 33.74 32.73 33.32 33.92 32.73 33.82 33.96 R39_3 18,243,256 85.97 34.12