Download Supplementrary Table 4. ABA-Repressed Genes in Mesophyll Cells

Supplementrary Table 4. ABA-Repressed Genes in Mesophyll Cells.
Affy probea
15194_s_at
15624_s_at
17957_at
12233_at
12337_at
12393_at
12566_at
12740_s_at
12752_s_at
12761_s_at
12785_at
12787_at
13124_at
13150_at
13151_g_at
13212_s_at
13218_s_at
13219_at
13229_s_at
13247_f_at
13269_s_at
13283_at
13320_at
13607_at
13659_at
13850_i_at
14056_at
14057_at
14383_at
14384_at
14642_f_at
14662_f_at
14679_at
14883_at
15012_g_at
15144_s_at
15160_s_at
15168_at
15172_s_at
Description
AGI Clusterc
numberb
GASA4
At5g15230
ADPG pyrophosphorylase small subunit
At5g48300
acetone-cyanohydrin lyase
At2g23600
succinyl-CoA-ligase alpha subunit
At5g08300
putative protein kinase
At2g21480
alcohol dehydrogenase
At2g47140
AP2 domain transcription factor
At2g20880
myrosinase
At5g25980
peroxidase
At4g21960
jasmonate inducible protein
At1g54040
P-Protein
At4g33010
fasciclin-like arabinogalactan-protein (FLA8)
At2g45470
phosphoenolpyruvate carboxylase
At2g42600
rubisco subunit binding-prot. alpha subunit
At2g28000
putative rubisco subunit binding-protein alpha subunAt2g28000
beta-1,3-glucanase 2
At3g57260
catalase 3
At1g20620
class IV chitinase
At3g54420
no hits
omega-3 fatty acid desaturase
At3g11170
dnaK-type molecular chaperone hsc70
At5g02500
mitochondrial chaperonin hsp60
At3g23990
unknown protein
At4g23350
hsp 70-like protein
At4g24280
serine/threonine kinase
At4g23150
no hits
phenylalanyl-trna synthetase
At4g39280
putative aconitase
At4g26970
unknown protein
At1g09460
putative phosphoribosylaminoimidazolecarboxamideAt2g35040
Ran-binding protein (atranbp1a)
At1g07140
no hits
WRKY DNA-binding protein
At2g03340
unknown protein
At4g27380
unknown protein
At2g44525
Carbonic anhydrase
At5g14740
germin-like protein
At5g20630
histone deacetylase-like protein
At5g22650
luminal binding protein
At5g42020
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
Experiment 1
Ratio
-1.9
-0.6
-0.9
-0.6
-1.4
-1.1
-0.6
-0.6
-2.9
-1.4
-0.7
-1.5
-0.7
-1.3
-0.8
-1.1
-1.1
-1.1
-1
-1
-1.1
-3.5
-2
-0.7
-2.9
-1.2
-3.3
-0.6
-1.8
-0.9
-0.6
-0.6
-3.1
-3.5
-3.3
-0.6
-1
-0.9
-1
d
p-value
e
0.99885
1.00000
1.00000
0.99997
0.99823
0.99999
0.99953
1.00000
1.00000
0.99870
0.99999
0.99885
1.00000
1.00000
0.99994
1.00000
1.00000
0.99996
0.99987
0.99999
1.00000
0.99947
0.99718
0.99982
0.99978
0.99766
0.99921
0.99939
0.99718
0.99950
1.00000
0.99870
0.99943
0.99935
0.99905
0.99999
0.99984
0.99988
0.99921
Experiment 2
Fold chge
-3.7
-1.5
-1.9
-1.5
-2.6
-2.1
-1.5
-1.5
-7.5
-2.6
-1.6
-2.8
-1.6
-2.5
-1.7
-2.1
-2.1
-2.1
-2.0
-2.0
-2.1
-11.3
-4.0
-1.6
-7.5
-2.3
-9.8
-1.5
-3.5
-1.9
-1.5
-1.5
-8.6
-11.3
-9.8
-1.5
-2.0
-1.9
-2.0
f
Ratio
-2
-1.2
-2.8
-2.7
-0.7
-1.3
-2.3
-0.7
-0.9
-2.6
-1.1
-0.8
-1.1
-3.8
-5.4
-0.6
-3.1
-2.5
-0.7
-2.7
-1.8
-0.7
-2.7
-1.7
-0.7
-1.3
-2.3
-1.1
-1.7
-5
-2.7
-1.3
-2.8
-1.2
-2.8
-1.9
-1.3
-2.7
-2.8
Seki et
al.g
p-value Fold chge
0.99997
1.00000
1.00000
0.99898
0.99978
0.99971
0.99870
0.99861
0.99999
1.00000
1.00000
0.99870
0.99995
1.00000
1.00000
0.99999
1.00000
0.99988
0.99997
1.00000
1.00000
0.99971
0.99995
0.99995
0.99959
0.99734
0.99967
0.99999
1.00000
0.99980
0.99989
0.99994
0.99943
0.99947
0.99988
1.00000
0.99988
1.00000
0.99834
-4.0
-2.3
-7.0
-6.5
-1.6
-2.5
-4.9
-1.6
-1.9
-6.1
-2.1
-1.7
-2.1
-13.9
-42.2
-1.5
-8.6
-5.7
-1.6
-6.5
-3.5
-1.6
-6.5
-3.2
-1.6
-2.5
-4.9
-2.1
-3.2
-32.0
-6.5
-2.5
-7.0
-2.3
-7.0
-3.7
-2.5
-6.5
-7.0
0.2
Hoth et
al.h
15278_at
15299_s_at
15411_at
15463_at
15523_s_at
15620_s_at
15953_s_at
15992_s_at
15993_at
16049_s_at
16053_i_at
16060_at
16120_at
16288_at
16333_i_at
16382_at
16435_at
16672_at
16916_s_at
16922_i_at
16923_s_at
16942_at
17102_s_at
17178_at
17292_at
17392_at
17393_at
17413_s_at
18002_at
18005_at
18251_at
18255_at
18284_at
18351_at
18826_at
18928_at
18972_at
19422_at
19426_s_at
19463_s_at
20156_at
20285_s_at
20429_at
20462_at
unknown protein
At2g45930
unknown protein
At1g30660
unknown protein
At2g17240
unknown protein
At4g23480
Storage protein
At4g24360
4-coumarate:CoA ligase
At1g51680
dnaK-type molecular chaperone
At5g02500
translation elongation factor eEF
At5g60390
no hits
no hits
glutathione transferase
At1g02920
zinc finger protein ATZF1
At1g08930
nonphototropic hypocotyl
At3g45780
putative prolyl 4-hydroxylase
At2g17720
xanthine dehydrogenase
At4g34900
similar to UMP synthase
At3g54470
RNA binding protein 45
At1g11650
no hits
dnaK-type molecular chaperone
At5g02490
Putative S-phase-specific ribosomal protein
At4g34670
Putative S-phase-specific ribosomal protein
At4g34670
putative ribosomal protein
At4g25740
putative peroxidase
At1g05260
unknown protein
At1g20910
amino acid permease
At5g49630
phenylalanine ammonia-lyase
At3g53260
Rubisco subunit binding-protein
At1g55490
peroxidase
At5g64120
fibrillarin 1
At5g52470
exonuclease
At3g61620
nuclear antigen homolog
At4g16830
unknown protein
At2g38860
putative hydroxyproline-rich glycoprotein precursor At4g34150
unknown protein
At4g23060
glucan synthase
At2g31960
endochitinase
At2g43620
unknown protein
At4g29060
putative heat shock protein
At2g04030
no hits
2-dehydro-3-deoxyphosphoheptonate aldolase
At4g39980
hairpin-induced protein
At3g52470
putative protein kinase
At2g39660
unknown protein
At4g14400
brassinosteroid receptor kinase
At3g13380
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
VI
-3.3
-3.9
-0.6
-0.6
-0.6
-0.8
-1.1
-0.7
-0.8
-1.3
-2
-1
-0.8
-1.3
-2
-1.2
-0.7
-1.9
-2
-1.2
-0.8
-0.6
-3.9
-3.5
-1.6
-0.9
-1.4
-2.2
-0.6
-2.9
-1
-3.3
-0.6
-4.4
-1.5
-1.8
-0.7
-0.7
-0.7
-0.7
-0.8
-0.7
-3.2
-2.3
0.99916
0.99943
0.99985
0.99999
0.99939
0.99953
1.00000
1.00000
0.99994
1.00000
0.99999
1.00000
0.99994
0.99992
0.99973
0.99763
0.99999
0.99998
0.99999
1.00000
0.99995
0.99984
0.99959
0.99935
0.99776
0.99978
1.00000
1.00000
0.99748
0.99975
0.99988
0.99973
0.99984
0.99997
0.99989
1.00000
0.99843
0.99977
0.99994
0.99992
0.99999
0.99853
0.99989
0.99905
-9.8
-14.9
-1.5
-1.5
-1.5
-1.7
-2.1
-1.6
-1.7
-2.5
-4.0
-2.0
-1.7
-2.5
-4.0
-2.3
-1.6
-3.7
-4.0
-2.3
-1.7
-1.5
-14.9
-11.3
-3.0
-1.9
-2.6
-4.6
-1.5
-7.5
-2.0
-9.8
-1.5
-21.1
-2.8
-3.5
-1.6
-1.6
-1.6
-1.6
-1.7
-1.6
-9.2
-4.9
-4.4
-1.5
-1.3
-1.1
-1.2
-0.8
-1.9
-3.1
-0.7
-1.9
-0.7
-0.6
-0.6
-0.6
-2.5
-3
-1.7
-3
-1.9
-0.6
-0.8
-1.9
-2.8
-1.4
-1
-1.6
-3.2
-4.1
-1.3
-1.8
-0.9
-0.7
-0.8
-1.1
-2.3
-1.1
-1.3
-2.2
-1.9
-2.3
-0.8
-1.1
-0.6
-3.3
0.99993
0.99812
0.99998
1.00000
0.99877
0.99998
1.00000
1.00000
0.99998
0.99999
0.99999
0.99931
0.99939
0.99910
0.99978
0.99999
1.00000
0.99964
0.99733
0.99809
1.00000
0.99998
0.99962
0.99931
0.99977
0.99993
0.99999
1.00000
1.00000
0.99748
0.99801
0.99994
0.99969
0.99997
0.99993
0.99877
0.99892
0.99999
1.00000
0.99999
0.99939
0.99885
0.99877
0.99996
-21.1
-2.8
-2.5
-2.1
-2.3
-1.7
-3.7
-8.6
-1.6
-3.7
-1.6
-1.5
-1.5
-1.5
-5.7
-8.0
-3.2
-8.0
-3.7
-1.5
-1.7
-3.7
-7.0
-2.6
-2.0
-3.0
-9.2
-17.1
-2.5
-3.5
-1.9
-1.6
-1.7
-2.1
-4.9
-2.1
-2.5
-4.6
-3.7
-4.9
-1.7
-2.1
-1.5
-9.8
0.41
6.5
41
20640_s_at
glyceraldehyde-3-phosphate dehydrogenase
At1g42970
VI
-0.6
1.00000
-1.5
-3.3
1.00000
-9.8
a
Describes names of probe set on Affymetrix chip.
Arabidopsis Genome Initiative locus numbers.
c
Indicates clusters in Figure 5.
d
Signal Log ratio value, which measures the change in expression level for a transcript between two arrays. This change is expressed as the log2 ratio.
A log2 ratio of 1 is the same as a Fold change of 2 (see Materials and Methods).
e
Change P-value which measures the probability that the expression levels of a probe set in two different arrays are the same or not. Change P-value of 1.0000 corre
to P-value > 0.99995.
f
Fold changes were calculated using the signal log ratio.
g
Fold changes obtained from Supplemental Table 5 online (column for 5-h ABA treatment; Seki et al., 2002).
h
Fold changes obtained from Supplemental Table Repressed.xls online (Hoth et al., 2002).
b
This table contains genes that have a change P-value ≥ 0.997 (Decrease or Marginal Decrease in Affymetrix nomenclature) in the 2 independent comparison
analyses and a signal log ratio < -0.6 in the 2 independent comparison analyses.