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Table S.1: The 8 cell-cycle related genes with associated GO terms followed by the 8 randomly selected genes with associated GO terms (when available) Gene ID CSN3 CSN4 CSN5 fwd pbl Accession GO:0007095 GO:0050821 GO:0001751 GO:0007095 GO:0032435 GO:0000338 GO:0050821 GO:0001751 GO:0008347 GO:0007095 GO:0007275 GO:0032435 GO:0007314 GO:0007310 GO:0048477 GO:0045787 GO:0000338 GO:0050821 GO:0000916 GO:0007110 GO:0007111 GO:0008340 GO:0030726 GO:0007112 GO:0043147 GO:0016310 GO:0048137 GO:0007283 GO:0007155 GO:0000910 GO:0007110 GO:0007111 GO:0000915 GO:0045184 GO:0007443 GO:0007509 GO:0008078 GO:0007399 GO term mitotic cell cycle G2/M transition DNA damage checkpoint protein stabilization compound eye photoreceptor cell differentiation mitotic cell cycle G2/M transition DNA damage checkpoint negative regulation of proteasomal ubiquitin-dependent protein catabolic process protein deneddylation protein stabilization compound eye photoreceptor cell differentiation glial cell migration mitotic cell cycle G2/M transition DNA damage checkpoint multicellular organismal development negative regulation of proteasomal ubiquitin-dependent protein catabolic process oocyte anterior/posterior axis specification oocyte dorsal/ventral axis specification oogenesis positive regulation of cell cycle protein deneddylation protein stabilization contractile ring contraction involved in cell cycle cytokinesis cytokinesis after meiosis I cytokinesis after meiosis II determination of adult lifespan male germline ring canal formation male meiosis cytokinesis meiotic spindle stabilization phosphorylation spermatocyte division spermatogenesis cell adhesion cytokinesis cytokinesis after meiosis I cytokinesis after meiosis II cytokinesis, actomyosin contractile ring assembly establishment of protein localization Malpighian tubule morphogenesis mesoderm migration involved in gastrulation mesodermal cell migration nervous system development Rho1 GO:0007422 GO:0050770 GO:0008360 GO:0051225 GO:0030036 GO:0051017 GO:0007015 GO:0007411 GO:0007298 GO:0035147 GO:0090254 GO:0007349 GO:0001745 GO:0000910 GO:0007010 GO:0048813 GO:0007368 GO:0007391 GO:0046663 GO:0007395 GO:0006897 GO:0007173 GO:0001737 GO:0001736 GO:0045184 GO:0007164 GO:0007369 GO:0010004 GO:0008354 GO:0007377 GO:0008347 GO:0035099 GO:0035317 GO:0007254 GO:0035149 GO:0045199 GO:0035006 GO:0008045 GO:0007405 GO:0016318 GO:0007424 GO:0007422 GO:0007374 GO:0030589 peripheral nervous system development regulation of axonogenesis regulation of cell shape spindle assembly actin cytoskeleton organization actin filament bundle assembly actin filament organization axon guidance border follicle cell migration branch fusion, open tracheal system cell elongation involved in imaginal disc-derived wing morphogenesis cellularization compound eye morphogenesis cytokinesis cytoskeleton organization dendrite morphogenesis determination of left/right symmetry dorsal closure dorsal closure, leading edge cell differentiation dorsal closure, spreading of leading edge cells endocytosis epidermal growth factor receptor signaling pathway establishment of imaginal disc-derived wing hair orientation establishment of planar polarity establishment of protein localization establishment of tissue polarity gastrulation gastrulation involving germ band extension germ cell migration germ-band extension glial cell migration hemocyte migration imaginal disc-derived wing hair organization JNK cascade lumen formation, open tracheal system maintenance of epithelial cell apical/basal polarity melanization defense response motor axon guidance neuroblast proliferation ommatidial rotation open tracheal system development peripheral nervous system development posterior midgut invagination pseudocleavage involved in syncytial blastoderm formation trbl zip AnnIX CG12785 CG16935 CG7889 CG8108 Rbf GO:0050770 GO:0051493 GO:0016476 GO:0035298 GO:0035159 GO:0006974 GO:0007435 GO:0035277 GO:0007370 GO:0016055 GO:0042060 GO:0007369 GO:0045839 GO:0051726 GO:0007370 GO:0009653 GO:0035017 GO:0000910 GO:0007391 GO:0046664 GO:0046663 GO:0007395 GO:0035072 GO:0045200 GO:0001736 GO:0045184 GO:0008258 GO:0035317 GO:0007443 GO:0006936 GO:0030239 GO:0031036 GO:0007297 GO:0051259 GO:0035159 GO:0007435 GO:0045214 GO:0048190 NA GO:0006631 NA NA GO:0042023 GO:0007307 regulation of axonogenesis regulation of cytoskeleton organization regulation of embryonic cell shape regulation of Malpighian tubule size regulation of tube length, open tracheal system response to DNA damage stimulus salivary gland morphogenesis spiracle morphogenesis, open tracheal system ventral furrow formation Wnt receptor signaling pathway wound healing gastrulation negative regulation of mitosis regulation of cell cycle ventral furrow formation anatomical structure morphogenesis cuticle pattern formation cytokinesis dorsal closure dorsal closure, amnioserosa morphology change dorsal closure, leading edge cell differentiation dorsal closure, spreading of leading edge cells ecdysone-mediated induction of salivary gland cell autophagic cell death establishment of neuroblast polarity establishment of planar polarity establishment of protein localization head involution imaginal disc-derived wing hair organization Malpighian tubule morphogenesis muscle contraction myofibril assembly myosin II filament assembly ovarian follicle cell migration protein oligomerization regulation of tube length, open tracheal system salivary gland morphogenesis sarcomere organization wing disc dorsal/ventral pattern formation NA fatty acid metabolic process NA NA DNA endoreduplication eggshell chorion gene amplification GO:0007113 GO:0000080 GO:0007095 GO:0043066 GO:0008285 GO:0008156 GO:0010629 GO:0045749 GO:0000122 sos GO:0051726 GO:0051101 GO:0007015 GO:0008595 GO:0045749 GO:0007399 GO:0007265 GO:0008360 GO:0045500 GO:0008293 GO:0007426 endomitotic cell cycle G1 phase of mitotic cell cycle mitotic cell cycle G2/M transition DNA damage checkpoint negative regulation of apoptosis negative regulation of cell proliferation negative regulation of DNA replication negative regulation of gene expression negative regulation of S phase of mitotic cell cycle negative regulation of transcription from RNA polymerase II promoter regulation of cell cycle regulation of DNA binding actin filament organization anterior/posterior axis specification, embryo negative regulation of S phase of mitotic cell cycle nervous system development Ras protein signal transduction regulation of cell shape sevenless signaling pathway torso signaling pathway tracheal outgrowth, open tracheal system