Download Figure S7. Results of traditional dN/dS estimates for the COI gene

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Mertensiella luschani
Xenopus laevis
Agkistrodon piscivorus
Ovophis okinavensis
Pantherophis guttatus
Dinodon semicarinatus
Boa constrictor
Python regius
Xenopeltis unicolor
Cylindrophis ruffus
Acrochordus granulatus
Leptotyphlops dulcis
Typhlops reticulatus
Rhineura floridana
Geocalamus acutus
Amphisbaena schmidti
Diplometopon zarudnyi
Bipes tridactylus
Bipes canaliculatus
Bipes biporus
> 1.0
0.8 - 1.0
0.0 - 0.8
0.1 sub./site
Iguana iguana
Sceloporus occidentalis
Anolis carolinensis
Abronia graminea
Ophisaurus attnuatus
Varanus komodoensis
Varanus salvator
Shinisaurus crocodilurus
Cordylus warreni
Eumeces egregius
Sphenodon punctatus
Caiman crocodilus
Alligator sinensis
Alligator mississippiensis
Gavialis gangeticus
Crocodylus moreletii
Tinamus major
Dromaius novaehollandiae
Apteryx haastii
Struthio camelus
Rhea americana
Smithornis sharpei
Corvus frugilegus
Vidua chalybeata
Buteo buteo
Ciconia ciconia
Ciconia boyciana
Falco peregrinus
Gallus gallus
Dogania subplana
Chrysemys picta
Chelonia mydas
Pelomedusa subrufa
Bos taurus
Hylobates lar
Gorilla gorilla
Homo sapiens
Pan paniscus
Pongo pygmaeus
Papio hamadryas
Macaca sylvanus
Cebus albifrons
Lemur catta
Nycticebus coucang
Tarsius bancanus
Figure S7. Results of traditional dN/dS estimates for the COI gene using the alternative
(mitochondrial gene-based) topology from Fig. S1, with branches colored based on dN/dS ratios.
Branch lengths are based on all mitochondrial protein-coding genes, optimized on this topology
in PAUP* under a GTRI model. Estimates of dN/dS are from codon model-based analyses
conducted HyPhy (See Supplementary Methods).
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