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Eukaryotic microorganisms and viruses 2 Heribert Cypionka 1 © Heribert Cypionka, www.icbm.de/pmbio What is the main difference between the prokaryotic and the eukaryotic cell? ● Compartimentation >> Separation of reaction rooms >> More complex regulation >> Transport including fusion and separation of membrane vesicles 2 © Heribert Cypionka, www.icbm.de/pmbio 1 The eukaryotic cell and its structure Size + microscopy techniques Nucleus Mitochondria, hydrogenosomes Chloroplasts Endoplasmic reticulum and Golgi complex Lysosomes and peroxisomes Microfilaments and microtubules Flagella and cilia Life cycle Differences between prokaryotes and eukaryotes 3 © Heribert Cypionka, www.icbm.de/pmbio Size Surface of a mouth mucosa cell of a healthy female student from the University of Oldenburg 4 © Heribert Cypionka, www.icbm.de/pmbio 2 Size "Microsomes" - many organells are bacterium-sized Structures smaller than bacteria are hardly resolved by light microscopy Cytoplasm of the same mouth mucosa cell 5 © Heribert Cypionka, www.icbm.de/pmbio Principles of microscopy ● Bright field ● Staining ● TEM: Contrasting + short wavelength ● Phase contrast (differential interference contrast, DIC, needs polarisation and beam-splitting prismas) ● Dark field ● Epifluorescence ● Confocal laser scanning microscopy 6 © Heribert Cypionka, www.icbm.de/pmbio 3 bright field phase contrast dark field DIC 7 © Heribert Cypionka, www.icbm.de/pmbio 8 © Heribert Cypionka, www.icbm.de/pmbio 4 ● Come-back of light microscopy... 9 © Heribert Cypionka, www.icbm.de/pmbio Pictures: Erhard Rhiel Electron microscopy ● Negative staining ● Contrasted Section TEM = Transmission electron microscopy ● Freeze etching + oblique sputtering 10 © Heribert Cypionka, www.icbm.de/pmbio 5 Scanning electron microscopy (SEM ) Object Detector screen Scanning beam Picture: Henrik Sass 11 ● The image is not projected to the detector screen, but calculated from dark and bright pixels obtained from scanning! © Heribert Cypionka, www.icbm.de/pmbio Prokaryotes: Nucleoid Eukaryotes: Nucleus Nucleus ● The nucleus normally contains several linear chromosoms with telomers ● DNA is embedded in histons ● Large part of the DNA is non-coding introns, little is exons Nucleolus 12 © Heribert Cypionka, www.icbm.de/pmbio 6 A double membrane with pores encloses the nucleus The nucleolus (plural nucleoli) is a "sub-organelle" of the nucleus. A main function of the nucleolus is the production and assembly of ribosome components 13 © Heribert Cypionka, www.icbm.de/pmbio Mitochondria membranebound! (Wikipedia) 14 © Heribert Cypionka, www.icbm.de/pmbio 7 Hydrogenosomes 15 © Heribert Cypionka, www.icbm.de/pmbio Physiology of the hydrogenosome (Brock) 16 (fully understood?) © Heribert Cypionka, www.icbm.de/pmbio 8 Chloroplasts ● Same (homolog) structure as mitochondrion, ribosomes, DNA ● Different names (compare also with bacterial cell!) 17 © Heribert Cypionka, www.icbm.de/pmbio Endoplasmic reticulum (ER) ● Rough ER -> production of (glyco-) proteins ● Smooth ER -> production of lipids, carbohydrates (Wikipedia) 18 © Heribert Cypionka, www.icbm.de/pmbio 9 Golgi complex • Closely associated with ER (transitional vesicles) • Asymmetric (cis-, trans-site) • Modification of proteins (glycosilation, activation by limited proteolysis) • Sorting of degradative enzymes (lysosomes), secretory enzymes (exoenzymes) • Secretion • Regeneration of the cell membrane 19 © Heribert Cypionka, www.icbm.de/pmbio Phagocytosis and pinocytosis ● Incorporation (and release) of particular or liquid structures into membrane vesicles (food vacuoles) ● Uptake of compounds into the cytoplasm requires osmotrophic processes 20 © Heribert Cypionka, www.icbm.de/pmbio 10 Lysosomes and peroxisomes ● Lysosomes -> production of digestive enzymes (Don't mix with lysozyme) ● Peroxisomes -> production of reactive H2O2 by incomplete O2 reduction 21 © Heribert Cypionka, www.icbm.de/pmbio Microfilaments and microtubules From Wikipedia, the free encyclopedia Microfilaments (fluorescence after staining with phalloidin) Microtubule structure ● Forming cytoskeleton ● Microfilaments 8 nm thick, protein: actin ● Microtubules 25 nm thick, protein: tubulin ● Homologs in prokaryotes: proteins MreB and FtsZ 22 © Heribert Cypionka, www.icbm.de/pmbio 11 Flagella and cilia 500 nm Prokaryotic flagellum (Brock) Eukaryotic flagella (Cross section, Wikipedia) ● Eukaryotic flagella long, cilia short ● Complex (9 + 2) structure, proteins: tubulin + dynein (= ATPase) ● Not rotating, ATP-consuming movement includes sliding of the central (axoneme) filaments against one another 23 © Heribert Cypionka, www.icbm.de/pmbio Life cycle of yeast (Saccharomyces) ● Eukaryotes can have haploid and diploid cells, males and females, and sex ● Cell division normally occurs via mitosis, the transition from dipoloid to haploid involves meiosis 24 © Heribert Cypionka, www.icbm.de/pmbio 12 Differences between Bacteria, Archaea and Eukarya Compartments separated by membranes Bacteria Archaea Eukarya No (rare) No (rare) Nuclear membrane mitochondria, chloroplasts, endoplasmic reticulum, membrane vesicles, vacuoles ≈1 µm ≈20 µm 1 Several Some: vacuoles or gas vacuoles (protein) Some: endospores Size Chromosome ≈1 µm 1 (often plasmids) Sexual reproduction Ribosomes 25 No No (Conjugation, partial transfer of DNA possible) 70 S Meiosis 70 S 80 S Flagella Simple Simple Composed (9+2) structure Cell wall Murein Proteins, polysaccharides, pseudomurein etc. Cellulose, carbonates, silicate etc. Membranes contain Hopanoids Ether lipids Steroids © Heribert Cypionka, www.icbm.de/pmbio Suggestions for homework ● Repeat the steps of mitosis, meiosis and the eukaryotic cell cycle ● Come to my office – let's start a hay infusion 26 © Heribert Cypionka, www.icbm.de/pmbio 13