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Allen Mouse Brain Connectivity Atlas
TECHNICAL WHITE PAPER:
INJECTION SITES AND STEREOTAXIC COORDINATES FOR ANTEROGRADE PROJECTOME (BRAIN-WIDE)
Table 1. Stereotaxic coordinates used for axonal projection mapping study (excluding ISI-directed visual area injections).
Brain region (primary structure
infected by rAAV)
Reference
atlas acronym
Mouse strain
Abducens nucleus
VI
Chat-IRES-Cre
168616111
-5.52
0.50
3.75
0
Accessory olfactory bulb
AOB
C57BL/6J
120812686
3.20
1.00
1.40
0
Accessory olfactory bulb
AOB
C57BL/6J
272918345
3.70
1.50
0.40
0
Accessory olfactory bulb
AOB
Cdhr1-Cre_KG66
182686228
3.08
1.00
1.75
0
Accessory olfactory bulb
AOB
Efr3aCre_NO108
267760731
2.80
1.25
1.30,
1.67
0
Accessory olfactory bulb
AOB
Gad2-IRES-Cre
266563321
3.08
1.00
1.75
0
Accessory olfactory bulb
AOB
Syt17-Cre_NO14
161178152
3.00
1.00
1.50
0
Agranular insular area
AI
C57BL/6J
112596790
1.78
2.40, 2.80
2.24
0
Agranular insular area
AI
Chrna2Cre_OE25
292209592
1.78
2.40, 2.80
2.25
0
Agranular insular area
AI
Cux2-IRES-Cre
299783689
1.10
3.25
1.9,
2.35
0
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
page 1 of 117
Experiment ID
AP
ML
DV
Angle°
alleninstitute.org
brain-map.org
Allen Mouse Brain Connectivity Atlas
TECHNICAL WHITE PAPER
Agranular insular area
AI
Htr2aCre_KM207
262536037
1.78
2.40, 2.80
2.25
0
Agranular insular area
AI
Rbp4-Cre_KL100
296048512
1.78
2.40, 2.80
2.25
0
Agranular insular area, dorsal part
AId
A930038C07RikTg1-Cre
267397941
1.78
2.40, 2.80
2.24
0
Agranular insular area, dorsal part
AId
C57BL/6J
170721670
3.10
1.40
0.65
0
Agranular insular area, dorsal part
AId
C57BL/6J
180673746
3.10
1.40
0.65
0
Agranular insular area, dorsal part
AId
C57BL/6J
180709230
2.60
2.00
2.40
0
Agranular insular area, dorsal part
AId
Glt25d2Cre_NF107
313327028
1.78
2.40
2.25
0
Agranular insular area, dorsal part
AId
Grp-Cre_KH288
184168899
1.78
2.80
2.25
0
Agranular insular area, dorsal part
AId
Ntsr1Cre_GN220
159322514
1.78
2.40, 2.80
2.24
0
Agranular insular area, dorsal part
AId
Rbp4-Cre_KL100
166153483
1.78
2.40, 2.80
2.24
0
Agranular insular area, dorsal part
AId
Syt6-Cre_KI148
264320859
1.78
2.40, 2.80
2.24
0
Agranular insular area, dorsal part
AId
Tlx3-Cre_PL56
294525229
-4.36
4.25
1.35
0
Agranular insular area, posterior part
AIp
C57BL/6J
174361746
-0.58
4.00
2.15
0
Agranular insular area, posterior part
AIp
Chrna2Cre_OE25
297858011
-0.34
3.85
3.00
0
Agranular insular area, posterior part
AIp
Cux2-IRES-Cre
272827141
-0.34
4.00, 3.75
3.00
0
Agranular insular area, posterior part
AIp
Rbp4-Cre_KL100
183330908
-0.34
4.00, 3.75
3.00,
3.25
0
Agranular insular area, posterior part
AIp
Syt6-Cre_KI148
168095756
-0.34
4.00, 3.75
3.00,
3.25
0
Anterior amygdalar area
AAA
Adcyap1-2A-Cre
187269162
-0.46
2.20
5.22
0
Anterior amygdalar area
AAA
C57BL/6J
159650350
0.14
2.10
4.80
0
Anterior amygdalar area
AAA
C57BL/6J
175372863
-0.30
2.12
4.95
0
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
page 2 of 117
alleninstitute.org
brain-map.org
Allen Mouse Brain Connectivity Atlas
TECHNICAL WHITE PAPER
Anterior amygdalar area
AAA
Gad2-IRES-Cre
299245589
-0.30
2.00
4.85
0
Anterior amygdalar area
AAA
Rbp4-Cre_KL100
300641829
-0.46
2.20
5.22
0
Anterior cingulate area
ACA
Efr3aCre_NO108
267749107
0.26
0.25
1.25
0
Anterior cingulate area
ACA
Gpr26Cre_KO250
265712971
0.26
0.25
1.25
0
Anterior cingulate area
ACA
Gpr26Cre_KO250
287248684
1.10
0.25
0.85
0
Anterior cingulate area
ACA
Grp-Cre_KH288
265291552
0.26
0.25
1.25
0
Anterior cingulate area
ACA
Htr2aCre_KM207
287714903
1.10
0.25
1.30
0
Anterior cingulate area
ACA
Ntsr1Cre_GN220
266412788
0.26
0.50
1.43
0
Anterior cingulate area
ACA
Scnn1a-Tg3-Cre
268038262
0.26
0.25
1.25
0
Anterior cingulate area
ACA
Syt6-Cre_KI148
299829892
1.10
0.25
1.30
0
Anterior cingulate area, dorsal part
ACAd
A930038C07RikTg1-Cre
166323896
1.10
0.25
1.00
0
Anterior cingulate area, dorsal part
ACAd
A930038C07RikTg1-Cre
171275617
0.26
0.27
0.80
0
Anterior cingulate area, dorsal part
ACAd
A930038C07RikTg1-Cre
286774770
1.00
0.75
0.30,
0.75
0
Anterior cingulate area, dorsal part
ACAd
C57BL/6J
112458114
1.10
0.25
1.00
0
Anterior cingulate area, dorsal part
ACAd
C57BL/6J
139426984
0.26
0.27
0.80
0
Anterior cingulate area, dorsal part
ACAd
C57BL/6J
146593590
0.14
0.70
0.40,
0.80
0
Anterior cingulate area, dorsal part
ACAd
Calb2-IRES-Cre
175719341
0.26
0.27
0.80
0
Anterior cingulate area, dorsal part
ACAd
Chrna2Cre_OE25
278069982
0.26
0.27
0.60
0
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
page 3 of 117
alleninstitute.org
brain-map.org
Allen Mouse Brain Connectivity Atlas
TECHNICAL WHITE PAPER
Anterior cingulate area, dorsal part
ACAd
Chrna2Cre_OE25
292125472
1.10
0.25
0.85
0
Anterior cingulate area, dorsal part
ACAd
Cort-T2A-Cre
165644051
0.26
0.27
0.80
0
Anterior cingulate area, dorsal part
ACAd
Crh-IRES-Cre
(BL)
183104511
0.26
0.27
0.60
0
Anterior cingulate area, dorsal part
ACAd
Cux2-IRES-Cre
182338356
1.10
0.25
0.85
0
Anterior cingulate area, dorsal part
ACAd
Cux2-IRES-Cre
183461297
0.26
0.27
0.60
0
Anterior cingulate area, dorsal part
ACAd
Efr3aCre_NO108
267705378
0.26
0.27
0.60
0
Anterior cingulate area, dorsal part
ACAd
Efr3aCre_NO108
277908168
1.10
0.25
0.85
0
Anterior cingulate area, dorsal part
ACAd
Erbb4-2ACreERT2
156742543
0.26
0.27
0.80
0
Anterior cingulate area, dorsal part
ACAd
Erbb4-2ACreERT2
182183683
0.26
0.27
0.80
0
Anterior cingulate area, dorsal part
ACAd
Etv1-CreERT2
114428632
1.10
0.25
1.00
0
Anterior cingulate area, dorsal part
ACAd
Etv1-CreERT2
181858761
0.26
0.27
0.80
0
Anterior cingulate area, dorsal part
ACAd
Gad2-IRES-Cre
167512351
0.26
0.27
0.80
0
Anterior cingulate area, dorsal part
ACAd
Gng7-Cre_KH71
158018630
0.25
0.27
0.80
0
Anterior cingulate area, dorsal part
ACAd
Grp-Cre_KH288
183472596
1.10
0.25
0.85
0
Anterior cingulate area, dorsal part
ACAd
Grp-Cre_KH288
184169615
2.10
0.75
0.35,
0.75
0
Anterior cingulate area, dorsal part
ACAd
Htr2aCre_KM207
183618139
2.10
0.75
0.35,
0.75
0
Anterior cingulate area, dorsal part
ACAd
Htr3aCre_NO152
305525773
0.26
0.27
0.60
0
Anterior cingulate area, dorsal part
ACAd
Ntsr1Cre_GN220
181179335
0.26
0.50
0.95
0
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
page 4 of 117
alleninstitute.org
brain-map.org
Allen Mouse Brain Connectivity Atlas
TECHNICAL WHITE PAPER
Anterior cingulate area, dorsal part
ACAd
Ntsr1Cre_GN220
266964075
2.10
0.75
0.35,
0.75
0
Anterior cingulate area, dorsal part
ACAd
Pvalb-IRES-Cre
168401109
0.26
0.27
0.80
0
Anterior cingulate area, dorsal part
ACAd
Rbp4-Cre_KL100
125833030
0.26
0.27
0.80
0
Anterior cingulate area, dorsal part
ACAd
Rbp4-Cre_KL100
161458737
1.10
0.25
1.00
0
Anterior cingulate area, dorsal part
ACAd
Scnn1a-Tg3-Cre
267101850
0.26
0.27
0.60
0
Anterior cingulate area, dorsal part
ACAd
Scnn1a-Tg3-Cre
268039675
1.10
0.25
0.85
0
Anterior cingulate area, dorsal part
ACAd
Sst-IRES-Cre
288262635
0.26
0.27
0.60
0
Anterior cingulate area, dorsal part
ACAd
Syt6-Cre_KI148
177783204
0.26
0.27
0.60
0
Anterior cingulate area, dorsal part
ACAd
Tac1-IRES2-Cre
286646877
0.26
0.27
0.60
0
Anterior cingulate area, dorsal part
ACAd
Trib2-2ACreERT2
287599685
0.26
0.27
0.60
0
Anterior cingulate area, ventral part
ACAv
A930038C07RikTg1-Cre
159319654
0.26
0.25
1.25
0
Anterior cingulate area, ventral part
ACAv
A930038C07RikTg1-Cre
298797288
1.10
0.25
1.30
0
Anterior cingulate area, ventral part
ACAv
C57BL/6J
112514202
1.10
0.25
1.30
0
Anterior cingulate area, ventral part
ACAv
C57BL/6J
139520203
0.26
0.25
1.25
0
Anterior cingulate area, ventral part
ACAv
Chrna2Cre_OE25
278173743
0.26
0.25
1.25
0
Anterior cingulate area, ventral part
ACAv
Chrna2Cre_OE25
299782983
1.10
0.25
1.30
0
Anterior cingulate area, ventral part
ACAv
Cux2-IRES-Cre
183470468
0.26
0.25
1.25
0
Anterior cingulate area, ventral part
ACAv
Efr3aCre_NO108
301179679
1.10
0.25
1.30
0
Anterior cingulate area, ventral part
ACAv
Etv1-CreERT2
114475228
0.26
0.25
1.25
0
Anterior cingulate area, ventral part
ACAv
Grp-Cre_KH288
184213701
1.10
0.25
1.30
0
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
page 5 of 117
alleninstitute.org
brain-map.org
Allen Mouse Brain Connectivity Atlas
TECHNICAL WHITE PAPER
Anterior cingulate area, ventral part
ACAv
Grp-Cre_KH288
265288825
1.34
1.50
0.35,
0.75
0
Anterior cingulate area, ventral part
ACAv
Ntsr1Cre_GN220
156546627
0.26
0.25
1.25
0
Anterior cingulate area, ventral part
ACAv
Rasgrf2-2A-dCre
303783015
0.26
0.25
1.25
0
Anterior cingulate area, ventral part
ACAv
Rbp4-Cre_KL100
126117554
0.26
0.25
1.25
0
Anterior cingulate area, ventral part
ACAv
Rbp4-Cre_KL100
286482701
1.10
0.25
1.30
0
Anterior cingulate area, ventral part
ACAv
Scnn1a-Tg3-Cre
278502708
1.10
0.25
1.30
0
Anterior cingulate area, ventral part
ACAv
Syt6-Cre_KI148
125801033
0.26
0.25
1.25
0
Anterior cingulate area, ventral part
ACAv
Syt6-Cre_KI148
126190033
0.26
0.27
0.80
0
Anterior cingulate area, ventral part
ACAv
Syt6-Cre_KI148
156785529
1.10
0.25
1.00
0
Anterior cingulate area, ventral part
ACAv
Trib2-2ACreERT2
287600392
0.26
0.25
1.25
0
Anterior hypothalamic nucleus
AHN
C57BL/6J
127649713
-0.34
3.00
5.52
30
Anterior hypothalamic nucleus
AHN
C57BL/6J
127649713
-0.34
3.00
5.52
30
Anterior hypothalamic nucleus
AHN
C57BL/6J
180674463
-0.58
0.20
4.75
0
Anterior hypothalamic nucleus
AHN
C57BL/6J
181057754
-0.70
0.40
5.46
0
Anterior hypothalamic nucleus
AHN
Gad2-IRES-Cre
266490034
-0.46
0.50
4.80
0
Anterior hypothalamic nucleus
AHN
Gad2-IRES-Cre
300167479
-0.70
0.37
5.50
0
Anterior hypothalamic nucleus
AHN
Gnrh1-Cre
160399309
0.02
0.25
4.90
0
Anterior hypothalamic nucleus
AHN
Htr3aCre_NO152
305677409
-0.46
1.00
4.88
0
Anterior hypothalamic nucleus
AHN
Lypd6Cre_KL156
298049545
-0.46
0.50
5.30
0
Anterior hypothalamic nucleus
AHN
Sim1-Cre
159375743
-0.46
0.50
4.94
0
Anterior hypothalamic nucleus
AHN
Sim1-Cre
182842391
-0.58
0.20
4.75
0
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
page 6 of 117
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brain-map.org
Allen Mouse Brain Connectivity Atlas
TECHNICAL WHITE PAPER
Anterior hypothalamic nucleus
AHN
Slc17a6-IRESCre
292035484
-0.46
0.50
4.80
0
Anterior hypothalamic nucleus
AHN
Slc18a2Cre_OZ14
301673462
-0.58
0.20
4.75
0
Anterior olfactory nucleus
AON
C57BL/6J
113443572
2.96
1.14
2.60
0
Anterior olfactory nucleus
AON
C57BL/6J
121509711
2.80
0.75
2.60
0
Anterior olfactory nucleus
AON
Chrna2Cre_OE25
304719312
2.80
0.75
2.60
0
Anterior olfactory nucleus
AON
Htr2aCre_KM207
287715650
3.08
1.00
3.42
0
Anterior olfactory nucleus
AON
Slc17a6-IRESCre
293546902
3.08
1.00
1.85
0
Anterior olfactory nucleus
AON
Slc17a7-IRES2Cre
267103498
2.96
1.14
2.60
0
Anterior olfactory nucleus
AON
Syt17-Cre_NO14
159994059
2.96
1.14
2.66
0
Anterior olfactory nucleus
AON
Syt17-Cre_NO14
159994767
2.80
0.75
2.60
0
Anterior olfactory nucleus
AON
Syt17-Cre_NO14
170949055
2.80
0.75
2.60
0
Anterior olfactory nucleus
AON
Tac1-IRES2-Cre
294313246
2.96
1.14
2.60
0
Anterior pretectal nucleus
APN
C57BL/6J
125363160
-2.30
0.80
3.20
0
Anterior pretectal nucleus
APN
C57BL/6J
127083591
-2.92
1.25
2.76
0
Anterior pretectal nucleus
APN
C57BL/6J
147789031
-2.80
1.00
2.15
0
Anterior pretectal nucleus
APN
Efr3aCre_NO108
299759175
-3.16
1.60
2.85
0
Anterior pretectal nucleus
APN
Gad2-IRES-Cre
305235787
-2.70
1.20
2.92
0
Anterior pretectal nucleus
APN
Grp-Cre_KH288
265293391
-2.92
1.25
2.76
0
Anterior pretectal nucleus
APN
Slc32a1-IRESCre
264076081
-0.70
2.70
2.39
0
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
page 7 of 117
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brain-map.org
Allen Mouse Brain Connectivity Atlas
TECHNICAL WHITE PAPER
Anterodorsal nucleus
AD
Slc6a5Cre_KF109
155735826
-0.70
0.60
2.90
0
Anterodorsal nucleus
AD
Slc6a5Cre_KF109
182280916
-0.70
0.60
2.90
0
Anterolateral visual area
VISal
A930038C07RikTg1-Cre
283017324
-3.40
3.60
0.45
0
Anterolateral visual area
VISal
C57BL/6J
116903968
-3.40
3.50
0.45
0
Anterolateral visual area
VISal
C57BL/6J
120437703
-3.08
4.00
0.80
0
Anterolateral visual area
VISal
C57BL/6J
146858755
-3.40
3.50
0.45
0
Anterolateral visual area
VISal
Chrna2Cre_OE25
292174264
-4.16
3.95
0.85
0
Anterolateral visual area
VISal
Cux2-IRES-Cre
266487079
-3.40
3.60
0.45
0
Anterolateral visual area
VISal
Cux2-IRES-Cre
287495026
1.70
0.40
2.00
0
Anterolateral visual area
VISal
Gpr26Cre_KO250
301210923
-3.40
3.60
0.45
0
Anterolateral visual area
VISal
Nr5a1-Cre
277849965
-3.40
3.60
0.45
0
Anterolateral visual area
VISal
Ntsr1Cre_GN220
287036898
-3.40
3.60
0.45
0
Anterolateral visual area
VISal
Rbp4-Cre_KL100
167794131
-3.40
3.50
0.45
0
Anterolateral visual area
VISal
Rorb-IRES2-Cre
298757426
-3.40
3.60
0.45
0
Anterolateral visual area
VISal
Scnn1a-Tg3-Cre
166459778
-3.40
3.50
0.45
0
Anterolateral visual area
VISal
Syt6-Cre_KI148
159224478
-3.40
3.50
0.45
0
Anterolateral visual area
VISal
Syt6-Cre_KI148
292791310
-4.04
4.00
0.35,
0.75
30
Anterolateral visual area
VISal
Tlx3-Cre_PL56
297225422
-4.04
4.00
0.35,
0.75
30
Anterolateral visual area
VISal
Tlx3-Cre_PL56
297231636
-3.40
3.60
0.45
0
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
page 8 of 117
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brain-map.org
Allen Mouse Brain Connectivity Atlas
TECHNICAL WHITE PAPER
Anteromedial nucleus
AM
C57BL/6J
146658170
-0.46
0.50
3.43
0
Anteromedial nucleus
AM
C57BL/6J
158840459
-0.34
0.35
3.58
0
Anteromedial nucleus
AM
Cck-IRES-Cre
159331462
-0.34
0.35
3.58
0
Anteromedial nucleus
AM
Crh-IRES-Cre
(ZJH)
171067319
-0.10
2.55
4.00
30
Anteromedial nucleus
AM
Grik4-Cre
167571459
-0.58
0.50
3.43
0
Anteromedial nucleus
AM
Prkcd-GluClaCFP-IRES-Cre
267610466
-0.58
0.50
3.43
0
Anteromedial nucleus, dorsal part
AMd
C57BL/6J
146046430
-0.70
0.60
2.90
0
Anteromedial nucleus, dorsal part
AMd
Gal-Cre_KI87
266174045
-0.58
0.50
3.43
0
Anteromedial visual area
VISam
A930038C07RikTg1-Cre
298324391
-3.16
1.55
0.17,
0.58
0
Anteromedial visual area
VISam
C57BL/6J
100141599
-3.16
1.55
0.17,
0.58
0
Anteromedial visual area
VISam
C57BL/6J
146077302
3.08
1.50
0.40
0
Anteromedial visual area
VISam
Chrna2Cre_OE25
297946154
-4.60
3.80
0.45
30
Anteromedial visual area
VISam
Cux2-IRES-Cre
263780729
-3.80
2.50
0.35
0
Anteromedial visual area
VISam
Drd3-Cre_KI196
297670312
-2.54
1.75
0.20,
0.55
0
Anteromedial visual area
VISam
Nos1-CreERT2
308385516
-3.80
2.50
0.35,
0.75
0
Anteromedial visual area
VISam
Rbp4-Cre_KL100
159753308
-2.54
1.75
0.20,
0.55
0
Anteromedial visual area
VISam
Rbp4-Cre_KL100
286418177
-3.16
1.55
0.17,
0.58
0
Anteromedial visual area
VISam
Rbp4-Cre_KL100
294481346
-3.16
1.55
0.17,
0.58
0
MARCH 2016 v.9
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Anteromedial visual area
VISam
Rorb-IRES2-Cre
301618122
-3.16
1.55
0.17;
0.58
0
Anteromedial visual area
VISam
Scnn1a-Tg3-Cre
257667830
-3.16
1.55
0.17,
0.58
0
Anteromedial visual area
VISam
Syt6-Cre_KI148
299733445
-3.16
1.55
0.17,
0.58
0
Anteroventral nucleus of thalamus
AV
C57BL/6J
114427219
-0.58
1.00
2.93
0
Anteroventral nucleus of thalamus
AV
Gal-Cre_KI87
175818392
-0.58
1.00
2.93
0
Anteroventral nucleus of thalamus
AV
Gpr26Cre_KO250
286553311
-0.58
1.00
2.93
0
Anteroventral nucleus of thalamus
AV
Grp-Cre_KH288
292478008
-0.58
1.00
2.93
0
Anteroventral nucleus of thalamus
AV
Slc17a6-IRESCre
309702727
-0.82
1.13
3.28
0
Anteroventral periventricular nucleus
AVPV
C57BL/6J
138059031
0.98
0.25
4.80
0
Anteroventral periventricular nucleus
AVPV
Kiss1-Cre
299247009
0.50
0.15
4.75
0
Arcuate hypothalamic nucleus
ARH
Agrp-IRES-Cre
146554676
-1.46
0.10
5.90
0
Arcuate hypothalamic nucleus
ARH
Agrp-IRES-Cre
146660999
-1.46
0.10
5.90
0
Arcuate hypothalamic nucleus
ARH
Erbb4-2ACreERT2
277854208
-1.22
0.10
5.90
0
Arcuate hypothalamic nucleus
ARH
Erbb4-2ACreERT2
306271212
-1.70
0.20
5.90
0
Arcuate hypothalamic nucleus
ARH
Gal-Cre_KI87
176431817
-1.22
0.10
5.90
0
Arcuate hypothalamic nucleus
ARH
Gal-Cre_KI87
178282527
-1.70
0.20
5.90
0
Arcuate hypothalamic nucleus
ARH
Ins2-Cre
286318327
-1.22
0.15
5.45
0
Arcuate hypothalamic nucleus
ARH
Ins2-Cre
298105299
-1.46
0.10
5.90
0
Arcuate hypothalamic nucleus
ARH
Kiss1-Cre
232310521
-1.22
0.10
5.90
0
Arcuate hypothalamic nucleus
ARH
Kiss1-Cre
232311236
-1.70
0.20
5.90
0
MARCH 2016 v.9
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Arcuate hypothalamic nucleus
ARH
Lepr-IRES-Cre
171482142
-1.46
0.10
5.90
0
Arcuate hypothalamic nucleus
ARH
Lepr-IRES-Cre
181891892
-1.46
0.10
5.90
0
Arcuate hypothalamic nucleus
ARH
Pomc-Cre (BL)
175738378
-1.70
0.20
5.90
0
Arcuate hypothalamic nucleus
ARH
Pomc-Cre (BL)
263369222
-1.22
0.10
5.90
0
Arcuate hypothalamic nucleus
ARH
Pomc-Cre (ST)
158142090
-1.46
0.10
5.90
0
Arcuate hypothalamic nucleus
ARH
Pomc-Cre (ST)
159751184
-1.90
0.25
5.40
0
Arcuate hypothalamic nucleus
ARH
Slc32a1-IRESCre
266489212
-1.22
0.10
5.90
0
Arcuate hypothalamic nucleus
ARH
Tac2-IRES2-Cre
241278553
-1.70
0.20
5.90
0
Arcuate hypothalamic nucleus
ARH
Th-Cre_FI172
286726777
-1.22
0.10
5.90
0
Auditory areas
AUD
C57BL/6J
116903230
-2.54
4.20
1.25
0
Auditory areas
AUD
Rasgrf2-2A-dCre
298719484
-2.46
4.35
0.85
0
Barrington's nucleus
B
Chat-IRES-Cre
267151656
-5.30
0.80
2.75
0
Basolateral amygdalar nucleus, anterior
part
BLAa
C57BL/6J
113144533
-1.06
3.00
3.90
0
Basolateral amygdalar nucleus, anterior
part
BLAa
C57BL/6J
277710753
-0.70
3.00
4.35
0
Basolateral amygdalar nucleus, ventral
part
BLAv
Slc32a1-IRESCre
305321177
-1.70
2.75
5.25
0
Basomedial amygdalar nucleus
BMA
C57BL/6J
273028004
-1.06
2.75
5.40
0
Basomedial amygdalar nucleus
BMA
Erbb4-2ACreERT2
165972951
-0.94
2.60
4.60
0
Basomedial amygdalar nucleus,
posterior part
BMAp
C57BL/6J
113935990
-1.06
2.50
4.84
0
Basomedial amygdalar nucleus,
posterior part
BMAp
C57BL/6J
125832322
-1.82
3.25
4.25
10
MARCH 2016 v.9
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Basomedial amygdalar nucleus,
posterior part
BMAp
Rbp4-Cre_KL100
182294687
-1.70
2.75
5.25
0
Bed nuclei of the stria terminalis
BST
C57BL/6J
117312486
0.38
0.50
3.90
0
Bed nuclei of the stria terminalis
BST
C57BL/6J
146747721
0.62
1.20
4.84
0
Bed nuclei of the stria terminalis
BST
C57BL/6J
147049515
0.02
0.50
3.58
0
Bed nuclei of the stria terminalis
BST
Cart-Tg1-Cre
176886238
-2.80
0.25
4.90
0
Bed nuclei of the stria terminalis
BST
Crh-IRES-Cre
(ZJH)
204832917
0.38
0.50
3.90
0
Bed nuclei of the stria terminalis
BST
Erbb4-2ACreERT2
167026321
0.02
0.50
3.58
0
Bed nuclei of the stria terminalis
BST
Erbb4-2ACreERT2
194948535
-0.22
2.75
4.03
30
Bed nuclei of the stria terminalis
BST
Gad2-IRES-Cre
294005186
0.38
0.70
5.00
0
Bed nuclei of the stria terminalis
BST
Gad2-IRES-Cre
302016815
0.50
0.90
4.85
0
Bed nuclei of the stria terminalis
BST
Gad2-IRES-Cre
303537993
0.50
0.50
3.90
0
Bed nuclei of the stria terminalis
BST
Gpr26Cre_KO250
305026146
0.26
0.35
4.60
0
Bed nuclei of the stria terminalis
BST
Htr2aCre_KM207
301947600
0.14
1.00
4.07
0
Bed nuclei of the stria terminalis
BST
Htr3aCre_NO152
305645843
0.02
0.50
3.58
0
Bed nuclei of the stria terminalis
BST
Ppp1r17Cre_NL146
267763584
-0.10
2.55
4.00
30
Bed nuclei of the stria terminalis
BST
Ppp1r17Cre_NL146
267764292
0.38
0.50
3.90
0
Bed nuclei of the stria terminalis
BST
Rbp4-Cre_KL100
308386222
-0.22
2.75
4.03
30
Bed nuclei of the stria terminalis
BST
Sim1-Cre
159095796
-0.22
2.75
4.03
30
Bed nuclei of the stria terminalis
BST
Sim1-Cre
159375036
0.02
0.50
3.58
0
MARCH 2016 v.9
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Bed nuclei of the stria terminalis
BST
Sim1-Cre
181786681
0.38
0.02
4.20
0
Bed nuclei of the stria terminalis
BST
Sim1-Cre
241279971
-0.22
2.75
4.03
30
Bed nuclei of the stria terminalis
BST
Slc17a6-IRESCre
167654731
0.10
0.40
3.67
0
Bed nuclei of the stria terminalis
BST
Slc6a3-Cre
175739085
-0.22
2.75
4.03
30
Bed nuclei of the stria terminalis
BST
Sst-IRES-Cre
304760810
-0.22
2.75
4.03
30
Bed nuclei of the stria terminalis
BST
Tac2-IRES2-Cre
265138021
0.14
1.00
4.07
0
Bed nuclei of the stria terminalis,
posterior division
BSTpr
Htr2aCre_KM207
300236763
0.02
0.50
3.58
0
Bed nucleus of the accessory olfactory
tract
BA
Slc17a6-IRESCre
303578324
-1.06
1.70
5.55
0
Bed nucleus of the anterior commissure
BAC
Cck-IRES-Cre
159433187
0.10
0.40
3.67
0
Caudoputamen
CP
C57BL/6J
100142580
0.14
1.75
2.53
0
Caudoputamen
CP
C57BL/6J
112307754
-0.70
2.70
2.39
0
Caudoputamen
CP
C57BL/6J
112458831
0.14
1.75
2.53
0
Caudoputamen
CP
C57BL/6J
113505468
0.62
0.29
5.14
-30
Caudoputamen
CP
C57BL/6J
113766038
-0.70
2.17
1.92
0
Caudoputamen
CP
C57BL/6J
114399934
0.98
2.65
3.19
0
Caudoputamen
CP
C57BL/6J
120570964
-1.34
3.00
2.82
0
Caudoputamen
CP
C57BL/6J
124059700
0.98
0.95
2.12
0
Caudoputamen
CP
C57BL/6J
127711803
0.62
0.29
5.14
-30
Caudoputamen
CP
C57BL/6J
127762867
-0.70
2.17
1.92
0
Caudoputamen
CP
C57BL/6J
146553266
0.98
0.95
2.12
0
Caudoputamen
CP
C57BL/6J
148198052
0.98
1.90
2.10
0
MARCH 2016 v.9
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Caudoputamen
CP
C57BL/6J
158916311
0.98
1.90
2.10
0
Caudoputamen
CP
C57BL/6J
175072215
-0.22
3.25
2.90
0
Caudoputamen
CP
C57BL/6J
180982124
-0.22
3.25
2.90
0
Caudoputamen
CP
C57BL/6J
272824561
1.42
2.25
2.85
0
Caudoputamen
CP
Chat-IRES-Cre
183009881
-1.22
3.05
2.37
0
Caudoputamen
CP
Chat-IRES-Cre
292959343
0.98
0.95
2.12
0
Caudoputamen
CP
Cux2-CreERT2
292620968
0.98
2.65
3.19
0
Caudoputamen
CP
Drd1a-Cre
159223001
0.98
0.95
2.12
0
Caudoputamen
CP
Drd1a-Cre
159941339
-0.70
2.70
2.39
0
Caudoputamen
CP
Drd1a-Cre
159942097
-0.70
2.70
3.40
0
Caudoputamen
CP
Drd1a-Cre
160537018
0.98
1.90
1.95
0
Caudoputamen
CP
Drd1a-Cre
160537796
0.98
1.05
3.12
0
Caudoputamen
CP
Drd2-Cre_ER44
127140981
0.14
1.75
2.53
0
Caudoputamen
CP
Drd2-Cre_ER44
127224133
0.98
0.95
2.12
0
Caudoputamen
CP
Drd2-Cre_ER44
155736539
-0.70
2.70
3.40
0
Caudoputamen
CP
Drd2-Cre_ER44
155737254
0.98
0.95
2.12
0
Caudoputamen
CP
Drd2-Cre_ER44
156670520
-0.70
2.70
2.39
0
Caudoputamen
CP
Drd2-Cre_ER44
158019342
0.96
1.90
1.95
0
Caudoputamen
CP
Drd2-Cre_ER44
159329308
0.98
1.05
3.12
0
Caudoputamen
CP
Drd2-Cre_ER44
160540013
-1.34
2.80
1.84
0
Caudoputamen
CP
Drd2-Cre_ER44
175732996
-1.34
2.80
1.84
0
Caudoputamen
CP
Gabrr3Cre_KC112
161176690
0.38
2.80
2.76
0
MARCH 2016 v.9
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Caudoputamen
CP
Gad2-IRES-Cre
157911832
-0.70
2.70
2.39
0
Caudoputamen
CP
Ntrk1-IRES-Cre
265929968
-1.22
3.05
2.37
0
Caudoputamen
CP
Ntrk1-IRES-Cre
287994474
-1.34
2.80
1.84
0
Caudoputamen
CP
Ntrk1-IRES-Cre
287995180
-0.70
2.70
2.39
0
Caudoputamen
CP
Ntrk1-IRES-Cre
310175667
0.98
0.95
2.12
0
Caudoputamen
CP
Pcdh9-Cre
286311648
-1.34
2.80
1.84
0
Caudoputamen
CP
Penk-2ACreERT2
278434443
0.14
1.75
2.53
0
Caudoputamen
CP
Plxnd1-Cre
293366035
-1.34
2.80
1.84
0
Caudoputamen
CP
Plxnd1-Cre
293366741
-0.70
2.17
1.92
0
Caudoputamen
CP
Ppp1r17Cre_NL146
286649703
-2.18
3.25
3.60
0
Caudoputamen
CP
Slc32a1-IRESCre
264095536
-2.92
1.75
3.45
0
Caudoputamen
CP
Th-Cre_FI172
272697238
-1.22
3.05
2.37
0
Central amygdalar nucleus
CEA
C57BL/6J
112459547
-1.22
2.77
3.80
0
Central amygdalar nucleus
CEA
C57BL/6J
117317884
-1.46
3.55
3.70
0
Central amygdalar nucleus
CEA
C57BL/6J
120282354
-1.46
3.55
3.70
0
Central amygdalar nucleus
CEA
C57BL/6J
146795148
-0.58
1.75
4.50
0
Central amygdalar nucleus
CEA
C57BL/6J
175072921
-0.70
2.20
5.00
0
Central amygdalar nucleus
CEA
Crh-IRES-Cre
(ZJH)
267152406
-0.94
2.25
4.47
0
Central amygdalar nucleus
CEA
Erbb4-2ACreERT2
120281646
-0.94
2.43
4.47
0
Central amygdalar nucleus
CEA
Erbb4-2ACreERT2
120435569
-1.22
2.77
3.80
0
MARCH 2016 v.9
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Central amygdalar nucleus
CEA
Etv1-CreERT2
181889764
-1.06
2.70
3.90
0
Central amygdalar nucleus
CEA
Etv1-CreERT2
181890477
-1.22
2.34
4.75
0
Central amygdalar nucleus
CEA
Etv1-CreERT2
286774064
-1.06
2.70
3.90
0
Central amygdalar nucleus
CEA
Prkcd-GluClaCFP-IRES-Cre
265945645
-1.82
2.65
4.25
0
Central amygdalar nucleus
CEA
Slc18a2Cre_OZ14
265648940
-0.94
2.25
4.47
0
Central amygdalar nucleus
CEA
Tac2-IRES2-Cre
241279261
-0.94
2.25
4.47
0
Central amygdalar nucleus, capsular
part
CEAc
C57BL/6J
127761449
-1.06
2.50
4.84
0
Central lateral nucleus of the thalamus
CL
Crh-IRES-Cre
(BL)
182805965
-0.58
1.00
2.93
0
Central lateral nucleus of the thalamus
CL
Gal-Cre_KI87
175817683
-1.58
0.68
2.73
0
Central lateral nucleus of the thalamus
CL
Grm2-Cre_MR90
175740500
-1.58
0.68
2.73
0
Central lateral nucleus of the thalamus
CL
Rbp4-Cre_KL100
183174303
-2.06
1.25
2.97
0
Central linear nucleus raphe
CLI
Calb2-IRES-Cre
301765327
-4.16
0.25
5.65
0
Central linear nucleus raphe
CLI
Syt17-Cre_NO14
127651139
-3.28
0.36
4.13
0
Central medial nucleus of the thalamus
CM
C57BL/6J
147135107
-1.06
0.20
3.40
0
Central medial nucleus of the thalamus
CM
C57BL/6J
147787606
-1.34
0.32
4.05
0
Central medial nucleus of the thalamus
CM
C57BL/6J
158841171
-1.46
0.13
4.00
0
Central medial nucleus of the thalamus
CM
C57BL/6J
273025166
-1.22
0.13
4.00
0
Central medial nucleus of the thalamus
CM
Calb2-IRES-Cre
182888003
-1.06
0.20
3.40
0
Central medial nucleus of the thalamus
CM
Gal-Cre_KI87
168004394
-1.06
0.20
3.40
0
Central medial nucleus of the thalamus
CM
Grm2-Cre_MR90
284665639
-1.06
0.20
3.40
0
Central medial nucleus of the thalamus
CM
Grp-Cre_KH288
183057424
-1.06
0.20
3.40
0
MARCH 2016 v.9
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Central medial nucleus of the thalamus
CM
Grp-Cre_KH288
301324895
-1.06
0.20
3.40
0
Central medial nucleus of the thalamus
CM
Lypd6Cre_KL156
298050269
-1.06
0.20
3.40
0
Central medial nucleus of the thalamus
CM
Lypd6Cre_KL156
303710632
-1.46
0.13
1.45
0
Central medial nucleus of the thalamus
CM
Plxnd1-Cre
293367448
-1.34
0.50
3.40
0
Central medial nucleus of the thalamus
CM
Plxnd1-Cre
301538025
-1.06
0.20
3.40
0
Claustrum
CLA
A930038C07RikTg1-Cre
292375491
1.10
3.25, 3.00
1.90,
2.35
0
Claustrum
CLA
C57BL/6J
180436360
-0.34
4.00
2.60
0
Claustrum
CLA
Cux2-IRES-Cre
293473098
-0.34
3.85
3.00
0
Claustrum
CLA
Cux2-IRES-Cre
296047806
1.78
2.40, 2.80
2.24
0
Claustrum
CLA
Oxtr-Cre_ON66
278171908
1.70
1.85
2.83
0
Claustrum
CLA
Oxtr-Cre_ON66
292372636
-1.46
3.75
3.40
0
Copula pyramidis
COPY
Prkcd-GluClaCFP-IRES-Cre
267611175
-6.12
2.25
2.90
0
Cortical amygdalar area, posterior part,
lateral zone
COApl
C57BL/6J
115958115
-1.22
2.34
4.75
0
Cortical amygdalar area, posterior part,
lateral zone
COApl
C57BL/6J
122641078
-0.58
2.75
5.40
0
Cortical amygdalar area, posterior part,
lateral zone
COApl
C57BL/6J
129573239
-1.70
2.75
5.25
0
Cortical amygdalar area, posterior part,
lateral zone
COApl
C57BL/6J
277480964
-2.30
2.75
4.70
0
Cortical amygdalar area, posterior part,
lateral zone
COApl
Gad2-IRES-Cre
305124396
-0.46
2.20
5.22
0
Cortical amygdalar area, posterior part,
lateral zone
COApl
Grik4-Cre
168302154
-1.70
2.75
5.25
0
MARCH 2016 v.9
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Cortical amygdalar area, posterior part,
lateral zone
COApl
Rbp4-Cre_KL100
304721447
-1.34
1.75
4.50
0
Cortical amygdalar area, posterior part,
lateral zone
COApl
Slc17a6-IRESCre
266962653
-1.70
2.75
5.25
0
Cortical amygdalar area, posterior part,
lateral zone
COApl
Slc17a7-IRES2Cre
267150949
-1.70
2.75
5.25
0
Cortical amygdalar area, posterior part,
medial zone
COApm
C57BL/6J
114249084
-2.70
2.80
5.07
0
Cortical amygdalar area, posterior part,
medial zone
COApm
C57BL/6J
125802444
-2.46
2.75
4.75
0
Cortical amygdalar area, posterior part,
medial zone
COApm
Sim1-Cre
170946889
-1.58
1.80
5.45
0
Cortical amygdalar area, posterior part,
medial zone
COApm
Slc32a1-IRESCre
299623085
-2.46
2.75
4.75
0
Crus 1
ANcr1
C57BL/6J
112827872
-6.48
3.00
0.98
0
Crus 1
ANcr1
Gabra6-IRESCre
181116850
-6.48
2.50
0.57
0
Crus 1
ANcr1
Grm2-Cre_MR90
287879384
-6.48
2.50
0.57
0
Crus 1
ANcr1
Grm2-Cre_MR90
301324157
-6.48
2.50
0.57
0
Crus 1
ANcr1
Pcp2Cre_GN135
147633169
-6.48
2.50
0.57
0
Crus 1
ANcr1
Pvalb-IRES-Cre
167201465
-6.48
2.50
0.57
0
Crus 2
ANcr2
C57BL/6J
142654808
-6.48
2.50
0.57
0
Crus 2
ANcr2
Pcp2Cre_GN135
168230532
-6.48
3.00
0.98
0
Cuneiform nucleus
CUN
C57BL/6J
120571672
-5.02
1.20
2.30
0
Cuneiform nucleus
CUN
C57BL/6J
126522350
-4.48
1.15
2.80
0
Dentate gyrus
DG
A930038C07RikTg1-Cre
298232793
1.70
0.40
2.00
0
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Dentate gyrus
DG
Adcyap1-2A-Cre
287247261
-3.52
2.50
3.50
0
Dentate gyrus
DG
C57BL/6J
100141214
-1.70
0.70
2.04
0
Dentate gyrus
DG
C57BL/6J
100148143
-1.70
0.70
2.04
0
Dentate gyrus
DG
C57BL/6J
112167395
interaural
0.00
1.50
1.77
0
Dentate gyrus
DG
C57BL/6J
112672268
-4.04
3.25
2.60
0
Dentate gyrus
DG
C57BL/6J
112745787
-2.30
1.75
1.66
0
Dentate gyrus
DG
C57BL/6J
113166056
-3.52
2.50
3.50
0
Dentate gyrus
DG
C57BL/6J
114008220
-2.92
1.85
1.95
0
Dentate gyrus
DG
C57BL/6J
114430043
-3.52
2.75
2.34
0
Dentate gyrus
DG
C57BL/6J
272970039
-0.80
0.25
2.45
0
Dentate gyrus
DG
Drd3-Cre_KI198
301122593
-1.70
0.70
2.04
0
Dentate gyrus
DG
Gad2-IRES-Cre
305400137
-1.70
0.70
2.04
0
Dentate gyrus
DG
Gal-Cre_KI87
266173339
-3.52
2.75
2.34
0
Dentate gyrus
DG
Grik4-Cre
113933871
-2.30
1.75
1.66
0
Dentate gyrus
DG
Grik4-Cre
114009636
-1.70
0.70
2.04
0
Dentate gyrus
DG
Grik4-Cre
114047146
-2.92
1.85
1.95
0
Dentate gyrus
DG
Grik4-Cre
182029174
-3.52
2.50
3.50
0
Dentate gyrus
DG
Grm2-Cre_MR90
264709761
-2.30
1.75
1.66
0
Dentate gyrus
DG
Grm2-Cre_MR90
264872385
-3.52
2.75
2.34
0
Dentate gyrus
DG
Grm2-Cre_MR90
287097454
-1.70
0.70
2.04
0
Dentate gyrus
DG
Grm2-Cre_MR90
287171983
-2.92
1.85
1.95
0
Dentate gyrus
DG
Lypd6Cre_KL156
299857813
-1.70
0.70
2.04
0
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Dentate gyrus
DG
Nos1-CreERT2
301327022
-1.70
0.70
2.04
0
Dentate gyrus
DG
Oxtr-Cre_ON66
301422682
-1.70
0.70
2.04
0
Dentate gyrus
DG
Pomc-Cre (BL)
159996191
-1.70
0.70
2.04
0
Dentate gyrus
DG
Pomc-Cre (BL)
160079360
-3.52
2.75
2.34
0
Dentate gyrus
DG
Pomc-Cre (ST)
113780276
-2.30
1.75
1.66
0
Dentate gyrus
DG
Ppp1r17Cre_NL146
278504263
-1.34
0.75
2.24
0
Dentate gyrus
DG
Ppp1r17Cre_NL146
308550233
-1.70
0.70
2.04
0
Dentate gyrus
DG
Rbp4-Cre_KL100
182295393
-1.70
0.70
2.04
0
Dentate gyrus
DG
Rbp4-Cre_KL100
183376982
-2.92
1.85
1.95
0
Dentate gyrus
DG
Rbp4-Cre_KL100
266250904
-2.30
1.75
1.66
0
Dentate gyrus
DG
Rbp4-Cre_KL100
266409949
-3.52
2.75
2.34
0
Dentate gyrus
DG
Slc17a7-IRES2Cre
293788700
-3.16
2.10
2.85
0
Dentate gyrus
DG
Slc17a7-IRES2Cre
293787994
-2.18
1.45
2.44
0
Dentate gyrus
DG
Slc32a1-IRESCre
305320171
-1.70
0.70
2.04
0
Dentate gyrus
DG
Syt17-Cre_NO14
288322797
-1.70
0.70
2.04
0
Dentate gyrus
DG
Syt17-Cre_NO14
293011049
-2.30
1.75
1.66
0
Dentate gyrus
DG
Syt17-Cre_NO14
293011759
-3.52
2.75
2.34
0
Dentate gyrus
DG
Syt17-Cre_NO14
293115527
-1.34
0.75
2.24
0
Dentate nucleus
DN
C57BL/6J
268389532
-6.24
2.20
2.25
0
Dentate nucleus
DN
Gad2-IRES-Cre
304675254
-6.12
2.25
2.90
0
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Dentate nucleus
DN
Slc17a6-IRESCre
286608092
-5.88
2.25
2.19
0
Diagonal band nucleus
NDB
Chat-IRES-Cre
167200755
0.50
0.81
4.84
0
Diagonal band nucleus
NDB
Chat-IRES-Cre
177605425
0.98
0.25
4.60
0
Diagonal band nucleus
NDB
Ntrk1-IRES-Cre
286319739
0.62
1.20
4.85
0
Dorsal auditory area
AUDd
C57BL/6J
115958825
-3.08
4.00
0.80
0
Dorsal auditory area
AUDd
C57BL/6J
139519496
-2.46
4.25
0.81
0
Dorsal auditory area
AUDd
C57BL/6J
146858006
-3.08
4.00
0.80
0
Dorsal auditory area
AUDd
C57BL/6J
158314278
-2.46
4.00
0.65
0
Dorsal auditory area
AUDd
C57BL/6J
180073473
-3.40
4.00
1.07
0
Dorsal auditory area
AUDd
Cux2-IRES-Cre
176430283
-2.46
4.25
0.81
0
Dorsal auditory area
AUDd
Erbb4-2ACreERT2
156743264
-2.46
4.25
0.81
0
Dorsal auditory area
AUDd
Nr5a1-Cre
114752488
-2.46
4.25
0.81
0
Dorsal auditory area
AUDd
Ntsr1Cre_GN220
120494024
-2.46
4.25
0.81
0
Dorsal auditory area
AUDd
Pvalb-IRES-Cre
160080068
-2.46
4.25
0.81
0
Dorsal auditory area
AUDd
Tac1-IRES2-Cre
181372049
-2.46
4.25
0.81
0
Dorsal auditory area
AUDd
Tac2-IRES2-Cre
268075711
-2.46
4.35
0.90
0
Dorsal cochlear nucleus
DCO
C57BL/6J
143515102
-5.52
1.16
3.70
-20
Dorsal cochlear nucleus
DCO
C57BL/6J
146794439
-5.20
1.95
3.50
0
Dorsal cochlear nucleus
DCO
Crh-IRES-Cre
(BL)
167213641
-6.12
2.25
2.80
0
Dorsal cochlear nucleus
DCO
Crh-IRES-Cre
(BL)
266839784
-6.12
2.25
2.90
0
Dorsal cochlear nucleus
DCO
Gad2-IRES-Cre
287664997
-6.12
2.25
2.90
0
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Dorsal cochlear nucleus
DCO
Pnmt-Cre
177903648
-6.12
2.25
2.80
0
Dorsal cochlear nucleus
DCO
Prkcd-GluClaCFP-IRES-Cre
292319155
-6.12
2.25
2.90
0
Dorsal cochlear nucleus
DCO
Slc17a6-IRESCre
286556914
-6.12
2.25
2.90
0
Dorsal cochlear nucleus
DCO
Slc6a5Cre_KF109
160152987
-6.12
2.25
2.80
0
Dorsal motor nucleus of the vagus
nerve
DMX
Chat-IRES-Cre
264564375
0.00
calamus
(-7.32
bregma)
0.25
0.48
0
Dorsal motor nucleus of the vagus
nerve
DMX
Gad2-IRES-Cre
303536573
0
calamus
0.25
0.48
0
Dorsal motor nucleus of the vagus
nerve
DMX
Nxph4-2ACreERT2
304612686
0
calamus
0.05
0.20
0
Dorsal motor nucleus of the vagus
nerve
DMX
Ppp1r17Cre_NL146
268323342
0.00
calamus
(-7.32
bregma)
0.25
0.48
0
Dorsal motor nucleus of the vagus
nerve
DMX
Slc18a2Cre_OZ14
287096578
0.00
calamus
(-7.32
bregma)
0.25
0.48
0
Dorsal motor nucleus of the vagus
nerve
DMX
Slc6a3-Cre
171021122
0.00
calamus
(-7.32
bregma)
0.25
0.48
0
Dorsal motor nucleus of the vagus
nerve
DMX
Syt17-Cre_NO14
263784128
0.00
calamus
(-7.32
bregma)
0.25
0.48
0
Dorsal nucleus raphe
DR
C57BL/6J
114155923
-4.24
0.52
2.86
10
Dorsal nucleus raphe
DR
Drd3-Cre_KI196
300111793
-3.80
0.04
2.85
0
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Dorsal nucleus raphe
DR
Slc6a4Cre_ET33
128055110
-4.24
0.52
2.86
10
Dorsal nucleus raphe
DR
Slc6a4Cre_ET33
129564675
-4.36
0.18
2.10
0
Dorsal nucleus raphe
DR
Slc6a4Cre_ET33
168300027
-3.88
0.20
3.30
0
Dorsal nucleus raphe
DR
Slc6a4CreERT2_EZ13
114155190
-4.24
0.52
2.86
10
Dorsal nucleus raphe
DR
Slc6a4CreERT2_EZ13
114248377
-4.36
0.18
2.10
0
Dorsal nucleus raphe
DR
Th-Cre_FI172
266500714
-4.24
0.52
2.86
10
Dorsal part of the lateral geniculate
complex
LGd
C57BL/6J
100141598
-2.30
2.00
2.44
0
Dorsal part of the lateral geniculate
complex
LGd
Gal-Cre_KI87
266248776
-2.30
2.00
2.60
0
Dorsal part of the lateral geniculate
complex
LGd
Htr2aCre_KM207
298004028
-2.00
2.15
2.60
0
Dorsal part of the lateral geniculate
complex
LGd
Htr2aCre_KM207
298003295
-2.30
2.00
2.60
0
Dorsal part of the lateral geniculate
complex
LGd
Prkcd-GluClaCFP-IRES-Cre
292320572
-2.00
2.15
2.60
0
Dorsal part of the lateral geniculate
complex
LGd
Scnn1a-Tg2-Cre
156198187
-2.30
2.00
2.44
0
Dorsal part of the lateral geniculate
complex
LGd
Scnn1a-Tg2-Cre
263241470
-2.30
2.00
2.60
0
Dorsal part of the lateral geniculate
complex
LGd
Slc17a6-IRESCre
293914056
-2.30
2.00
2.60
0
Dorsal part of the lateral geniculate
complex
LGd
Slc17a6-IRESCre
293914766
-2.00
2.15
2.60
0
Dorsal part of the lateral geniculate
complex
LGd
Slc17a7-IRES2Cre
293787288
-2.30
2.00
2.60
0
MARCH 2016 v.9
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Dorsal part of the lateral geniculate
complex
LGd
Slc18a2Cre_OZ14
287458189
-2.00
2.15
2.60
0
Dorsal part of the lateral geniculate
complex
LGd
Slc18a2Cre_OZ14
287458895
-2.30
2.00
2.60
0
Dorsal part of the lateral geniculate
complex
LGd
Slc18a2Cre_OZ14
301735795
-2.30
2.00
2.60
0
Dorsal peduncular area
DP
C57BL/6J
112597496
1.70
0.25
2.47
0
Dorsal premammillary nucleus
PMd
C57BL/6J
146659588
-1.46
0.39
5.50
0
Dorsal premammillary nucleus
PMd
Tac1-IRES2-Cre
294316542
-2.70
0.13
5.20
0
Dorsomedial nucleus of the
hypothalamus
DMH
C57BL/6J
175106053
-0.58
0.20
4.75
0
Dorsomedial nucleus of the
hypothalamus
DMH
Cart-Tg1-Cre
298833739
-1.46
0.39
5.50
0
Dorsomedial nucleus of the
hypothalamus
DMH
Gad2-IRES-Cre
287538943
-1.50
0.35
5.30
0
Dorsomedial nucleus of the
hypothalamus
DMH
Gal-Cre_KI87
178283239
-1.50
0.35
5.20
0
Dorsomedial nucleus of the
hypothalamus
DMH
Gal-Cre_KI87
266248065
-1.50
0.35
5.20
0
Dorsomedial nucleus of the
hypothalamus
DMH
Hdc-Cre_IM1
168616827
-1.70
0.35
4.90
0
Dorsomedial nucleus of the
hypothalamus
DMH
Ins2-Cre
265813096
-1.22
0.94
5.04
10
Dorsomedial nucleus of the
hypothalamus
DMH
Lepr-IRES-Cre
113314337
-1.46
0.39
5.30
0
Dorsomedial nucleus of the
hypothalamus
DMH
Lepr-IRES-Cre
160317628
-1.70
0.36
4.89
0
Dorsomedial nucleus of the
hypothalamus
DMH
Nr5a1-Cre
182336846
-1.46
0.39
5.30
0
Dorsomedial nucleus of the
hypothalamus
DMH
Ppp1r17Cre_NL146
308641549
-1.50
0.35
5.30
0
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Dorsomedial nucleus of the
hypothalamus
DMH
Rasgrf2-2A-dCre
313325371
-1.46
0.39
5.50
0
Dorsomedial nucleus of the
hypothalamus
DMH
Sim1-Cre
159222295
-0.94
0.25
4.52
0
Dorsomedial nucleus of the
hypothalamus
DMH
Sim1-Cre_KJ18
266837456
-1.46
0.39
5.50
0
Ectorhinal area
ECT
A930038C07RikTg1-Cre
264630726
-4.36
4.25
1.40
0
Ectorhinal area
ECT
A930038C07RikTg1-Cre
286837316
-4.04
3.80
1.90
0
Ectorhinal area
ECT
C57BL/6J
180403712
-2.00
4.20
2.15
0
Ectorhinal area
ECT
C57BL/6J
272414403
-4.36
4.25
1.40
0
Ectorhinal area
ECT
Cux2-IRES-Cre
278317239
-4.04
3.80
1.90
0
Ectorhinal area
ECT
Gpr26Cre_KO250
301264977
-4.36
4.00
1.25
0
Ectorhinal area
ECT
Gpr26Cre_KO250
301265683
-4.36
4.25
1.35
0
Ectorhinal area
ECT
Rbp4-Cre_KL100
182794184
-4.36
4.25
1.40
0
Endopiriform nucleus, dorsal part
EPd
C57BL/6J
158321996
-0.22
3.70
3.25
0
Endopiriform nucleus, dorsal part
EPd
Gad2-IRES-Cre
305403845
-1.46
4.00
3.70
0
Endopiriform nucleus, dorsal part
EPd
Htr2aCre_KM207
308549214
-1.46
3.75
3.40
0
Endopiriform nucleus, dorsal part
EPd
Kcnc2-Cre
126853068
0.98
2.85
3.14
0
Endopiriform nucleus, dorsal part
EPd
Kcnc2-Cre
126863090
-1.46
3.75
3.40
0
Endopiriform nucleus, dorsal part
EPd
Oxtr-Cre_ON66
267762146
0.98
2.65
3.19
0
Endopiriform nucleus, dorsal part
EPd
Oxtr-Cre_ON66
267762859
0.98
2.85
3.14
0
Endopiriform nucleus, dorsal part
EPd
Syt17-Cre_NO14
187268452
0.98
3.00
3.14
0
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Endopiriform nucleus, ventral part
EPv
Efr3aCre_NO108
299244730
-0.94
2.60
4.60
0
Entorhinal area
ENT
Grm2-Cre_MR90
267747690
-4.21
3.40
2.20,
2.60
0
Entorhinal area
ENT
Scnn1a-Tg2-Cre
268041795
-4.59
3.40
2.20,
2.60
0
Entorhinal area
ENT
Scnn1a-Tg3-Cre
287770700
-4.43
3.40
2.20,
2.60
0
Entorhinal area
ENT
Sst-IRES-Cre
288321385
-4.72
3.40
2.20,
2.60
0
Entorhinal area
ENT
Syt17-Cre_NO14
288322091
-4.16
3.80
3.00
0
Entorhinal area, lateral part
ENTl
A930038C07RikTg1-Cre
298798846
-3.16
4.25
2.76
0
Entorhinal area, lateral part
ENTl
A930038C07RikTg1-Cre
298797996
-4.16
3.80
3.00
0
Entorhinal area, lateral part
ENTl
C57BL/6J
114472145
-3.16
4.25
2.76
0
Entorhinal area, lateral part
ENTl
C57BL/6J
126116848
-3.40
4.10
3.05
0
Entorhinal area, lateral part
ENTl
C57BL/6J
127397469
-2.70
4.25
2.75
0
Entorhinal area, lateral part
ENTl
C57BL/6J
142654100
-4.36
4.00
1.25
0
Entorhinal area, lateral part
ENTl
C57BL/6J
146553971
1.18
0.70
4.15
0
Entorhinal area, lateral part
ENTl
C57BL/6J
180297139
-4.36
3.90
1.40
0
Entorhinal area, lateral part
ENTl
Chrna2Cre_OE25
299857096
-4.16
3.80
3.00
0
Entorhinal area, lateral part
ENTl
Cux2-CreERT2
181859467
-4.72
3.37
2.11,
2.60
0
Entorhinal area, lateral part
ENTl
Cux2-IRES-Cre
263974698
-4.36
4.25
1.40
0
Entorhinal area, lateral part
ENTl
Cux2-IRES-Cre
272779830
-4.36
4.25
1.30
0
Entorhinal area, lateral part
ENTl
Cux2-IRES-Cre
287953223
-4.22
3.40
2.20
0
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
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Entorhinal area, lateral part
ENTl
Cux2-IRES-Cre
287952517
-3.16
4.25
2.76
0
Entorhinal area, lateral part
ENTl
Drd3-Cre_KI196
293702482
-3.16
4.25
2.76
0
Entorhinal area, lateral part
ENTl
Grm2-Cre_MR90
183225124
-3.16
4.25
2.76
0
Entorhinal area, lateral part
ENTl
Htr2aCre_KM207
301988879
-3.16
4.25
2.76
0
Entorhinal area, lateral part
ENTl
Ntsr1Cre_GN220
159602279
-4.24
4.00
1.65
0
Entorhinal area, lateral part
ENTl
Otof-Cre
167212932
-3.40
4.10
3.05
0
Entorhinal area, lateral part
ENTl
Otof-Cre
181891184
-4.16
3.80
3.00
0
Entorhinal area, lateral part
ENTl
Otof-Cre
182226133
-3.16
4.25
2.76
0
Entorhinal area, lateral part
ENTl
Pcdh9-Cre
267211671
-4.60
3.75
1.55
0
Entorhinal area, lateral part
ENTl
Penk-IRES2-Cre
305973112
-4.16
3.80
3.00
0
Entorhinal area, lateral part
ENTl
Plxnd1-Cre
301464114
-2.70
2.80
5.07
0
Entorhinal area, lateral part
ENTl
Rbp4-Cre_KL100
232311959
-4.24
4.00
1.65
0
Entorhinal area, lateral part
ENTl
Rbp4-Cre_KL100
286483411
-3.16
4.25
2.76
0
Entorhinal area, lateral part
ENTl
Scnn1a-Tg3-Cre
287769992
-4.04
3.80
1.90
0
Entorhinal area, lateral part
ENTl
Syt17-Cre_NO14
293009265
-3.16
4.25
2.76
0
Entorhinal area, lateral part
ENTl
Wfs1-Tg2CreERT2
278435864
-4.32
3.40
2.20,
2.60
0
Entorhinal area, lateral part
ENTl
Wfs1-Tg2CreERT2
278435152
-4.35
3.40
2.20,
2.60
0
Entorhinal area, lateral part
ENTl
Wfs1-Tg3CreERT2
182516286
-3.16
4.25
2.76
0
Entorhinal area, medial part, dorsal
zone
ENTm
C57BL/6J
112672974
-4.72
3.37
2.11,
2.60
0
Entorhinal area, medial part, dorsal
zone
ENTm
C57BL/6J
113226232
-4.16
3.80
3.00
0
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
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Entorhinal area, medial part, dorsal
zone
ENTm
C57BL/6J
127139568
-4.48
3.00
3.44
0
Entorhinal area, medial part, dorsal
zone
ENTm
Calb1-2A-dgCre
293750063
-4.72
3.40
2.20,
2.60
0
Entorhinal area, medial part, dorsal
zone
ENTm
Cux2-CreERT2
194947823
-4.96
3.10
2.65
0
Entorhinal area, medial part, dorsal
zone
ENTm
Cux2-CreERT2
264873092
-4.45
3.40
2.60
0
Entorhinal area, medial part, dorsal
zone
ENTm
Cux2-CreERT2
264873809
-4.58
3.40
2.60
0
Entorhinal area, medial part, dorsal
zone
ENTm
Drd3-Cre_KI196
300078194
-4.72
3.40
2.2,
2.6
0
Entorhinal area, medial part, dorsal
zone
ENTm
Grik4-Cre
267998328
-4.04
3.40
2.20,
2.60
0
Entorhinal area, medial part, dorsal
zone
ENTm
Grik4-Cre
267999034
-4.23
3.40
2.20,
2.60
0
Entorhinal area, medial part, dorsal
zone
ENTm
Htr2aCre_KM207
300319630
-4.16
3.80
3.00
0
Entorhinal area, medial part, dorsal
zone
ENTm
Nos1-CreERT2
299403823
-4.40
3.40
2.2,
2.6
0
Entorhinal area, medial part, dorsal
zone
ENTm
Pcdh9-Cre
308642254
-4.72
3.40
2.20
0
Entorhinal area, medial part, dorsal
zone
ENTm
Pcdh9Cre_NP276
308721177
-4.60
2.40
2.95
0
Entorhinal area, medial part, dorsal
zone
ENTm
Scnn1a-Tg2-Cre
299447153
-4.34
3.40
2.60
0
Entorhinal area, medial part, dorsal
zone
ENTm
Scnn1a-Tg2-Cre
302014692
-4.47
3.40
2.65
0
Entorhinal area, medial part, dorsal
zone
ENTm
Syt17-Cre_NO14
286484879
-4.72
3.40
2.20,
2.60
0
Entorhinal area, medial part, dorsal
zone
ENTm
Wfs1-Tg3CreERT2
167793416
-4.16
3.80
3.00
0
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
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Facial motor nucleus
VII
C57BL/6J
123663689
-5.34
1.11
4.80
0
Facial motor nucleus
VII
C57BL/6J
147214398
-5.02
1.11
4.80
0
Facial motor nucleus
VII
Chat-IRES-Cre
157712456
-6.00
1.15
4.57
0
Facial motor nucleus
VII
Chat-IRES-Cre
301800314
-4.16
1.00
5.70
0
Facial motor nucleus
VII
Grik4-Cre
113766744
-6.00
1.15
4.57
0
Facial motor nucleus
VII
Scnn1a-Tg2-Cre
177905562
-6.00
1.15
4.57
0
Fastigial nucleus
FN
C57BL/6J
127650431
-6.36
0.75
2.40
0
Field CA1
CA1
C57BL/6J
100147861
-1.70
1.60
1.17
0
Field CA1
CA1
C57BL/6J
100148443
-3.52
3.50
2.07
0
Field CA1
CA1
C57BL/6J
116900714
-2.30
1.25
1.25
0
Field CA1
CA1
C57BL/6J
120436274
-2.30
1.25
1.25
0
Field CA1
CA1
C57BL/6J
120494729
-2.46
2.50
1.34
0
Field CA1
CA1
Chrna2Cre_OE25
297894255
-4.04
3.80
1.90
0
Field CA1
CA1
Cux2-IRES-Cre
294397907
-4.04
3.80
1.90
0
Field CA1
CA1
Drd3-Cre_KI198
301119459
-2.46
2.50
1.34
0
Field CA1
CA1
Drd3-Cre_KI198
301130077
-1.70
1.60
1.17
0
Field CA1
CA1
Etv1-CreERT2
171019004
-1.70
1.60
1.17
0
Field CA1
CA1
Etv1-CreERT2
175718634
-2.92
3.00
3.45
0
Field CA1
CA1
Etv1-CreERT2
181093729
-3.52
3.50
2.07
0
Field CA1
CA1
Gad2-IRES-Cre
305380411
-2.46
2.50
1.34
0
Field CA1
CA1
Gpr26Cre_KO250
286554017
-2.46
2.50
1.34
0
Field CA1
CA1
Kcnc2-Cre
182843806
-2.46
2.50
1.34
0
MARCH 2016 v.9
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Field CA1
CA1
Nos1-CreERT2
301325601
-2.46
2.50
1.34
0
Field CA1
CA1
Ppp1r17Cre_NL146
278503555
-1.70
0.70
2.04
0
Field CA1
CA1
Ppp1r17Cre_NL146
292479421
-1.70
0.50
1.70
0
Field CA1
CA1
Ppp1r17Cre_NL146
292532771
-2.92
1.17
1.40
0
Field CA1
CA1
Ppp1r17Cre_NL146
292532065
-3.52
2.50
1.35
0
Field CA1
CA1
Sim1-Cre
181777177
-1.70
0.50
1.70
0
Field CA1
CA1
Slc17a7-IRES2Cre
267104205
-2.46
2.50
1.34
0
Field CA1
CA1
Slc17a7-IRES2Cre
286317619
-1.70
0.70
2.04
0
Field CA1
CA1
Slc32a1-IRESCre
305381127
-2.46
2.50
1.34
0
Field CA1
CA1
Syt17-Cre_NO14
286610923
-3.52
3.50
2.07
0
Field CA1
CA1
Vipr2-Cre_KE2
180405830
-2.46
2.50
1.34
0
Field CA1
CA1
Vipr2-Cre_KE2
180520968
-2.30
1.25
1.25
0
Field CA1
CA1
Vipr2-Cre_KE2
182226839
-3.52
3.50
2.07
0
Field CA3
CA3
C57BL/6J
112308468
-2.46
2.60
2.36
0
Field CA3
CA3
C57BL/6J
112745073
-1.70
2.00
1.85
0
Field CA3
CA3
C57BL/6J
113935285
-2.80
2.85
3.00
0
Field CA3
CA3
C57BL/6J
114429338
-2.30
2.97
1.80
0
Field CA3
CA3
C57BL/6J
127649005
-2.92
3.00
3.45
0
Field CA3
CA3
C57BL/6J
180523704
-1.82
2.05
2.42
0
Field CA3
CA3
C57BL/6J
272404772
-2.30
2.75
1.75
0
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
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Field CA3
CA3
Drd3-Cre_KI198
301120618
-2.46
2.60
2.25
0
Field CA3
CA3
Gad2-IRES-Cre
266488504
-2.54
4.25
3.32
25
Field CA3
CA3
Grik4-Cre
177606858
-2.46
2.60
2.36
0
Field CA3
CA3
Grik4-Cre
177780284
-1.70
2.00
1.85
0
Field CA3
CA3
Grik4-Cre
178382220
-2.80
2.85
3.00
0
Field CA3
CA3
Grik4-Cre
179643824
-2.30
2.97
1.80
0
Field CA3
CA3
Grp-Cre_KH288
179644545
-2.46
2.60
2.36
0
Field CA3
CA3
Grp-Cre_KH288
179902073
-1.70
2.00
1.85
0
Field CA3
CA3
Grp-Cre_KH288
182615063
-2.30
2.97
1.80
0
Field CA3
CA3
Grp-Cre_KH288
182615771
-2.80
2.85
3.00
0
Field CA3
CA3
Kcnc2-Cre
182933935
-2.46
2.60
2.36
0
Field CA3
CA3
Nos1-CreERT2
301326316
-2.46
2.60
2.25
0
Field CA3
CA3
Oxtr-Cre_ON66
301421960
-2.46
2.60
2.25
0
Field CA3
CA3
Ppp1r17Cre_NL146
278318653
-2.46
2.60
2.36
0
Field CA3
CA3
Ppp1r17Cre_NL146
278319402
-1.70
2.00
1.85
0
Field CA3
CA3
Ppp1r17Cre_NL146
278398243
-2.30
2.97
1.80
0
Field CA3
CA3
Ppp1r17Cre_NL146
278399657
-3.52
2.50
3.50
0
Field CA3
CA3
Prkcd-GluClaCFP-IRES-Cre
171274191
-1.70
2.00
1.85
0
Field CA3
CA3
Syt17-Cre_NO14
249402769
-3.08
3.00
3.60
0
Flocculus
FL
C57BL/6J
112789899
-4.24
2.36
3.58
0
Flocculus
FL
Nos1-CreERT2
304997333
-5.20
1.25
2.80
0
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
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Gigantocellular reticular nucleus
GRN
A930038C07RikTg1-Cre
299995638
0.0
calamus
0.05
1.00
0
Gigantocellular reticular nucleus
GRN
C57BL/6J
125437921
-6.12
0.35
4.90
0
Gigantocellular reticular nucleus
GRN
C57BL/6J
126188607
-6.24
0.85
4.40
0
Gigantocellular reticular nucleus
GRN
C57BL/6J
126710034
-6.48
1.00
4.82
0
Gigantocellular reticular nucleus
GRN
C57BL/6J
126843905
-6.72
0.50
4.55
0
Gigantocellular reticular nucleus
GRN
C57BL/6J
127041832
-0.24
calamus
(-7.56
bregma)
0.50
1.75
0
Gigantocellular reticular nucleus
GRN
C57BL/6J
147706228
-5.02
0.50
5.25
0
Gigantocellular reticular nucleus
GRN
Dbh-Cre_KH212
287029894
-5.68
0.80
5.20
0
Gigantocellular reticular nucleus
GRN
Gad2-IRES-Cre
287876212
-6.12
0.35
4.90
0
Gigantocellular reticular nucleus
GRN
Pdzk1ip1Cre_KD31
182030590
-5.34
1.11
4.80
0
Gigantocellular reticular nucleus
GRN
Slc17a6-IRESCre
286609510
-6.12
0.35
4.90
0
Gigantocellular reticular nucleus
GRN
Slc32a1-IRESCre
303468314
-5.88
2.25
5.30
25
Gigantocellular reticular nucleus
GRN
Slc32a1-IRESCre
305293928
-6.48
1.00
4.90
0
Gigantocellular reticular nucleus
GRN
Slc6a5Cre_KF109
160081484
-5.88
2.25
5.00
25
Gigantocellular reticular nucleus
GRN
Slc6a5Cre_KF109
267703239
-5.88
2.25
5.00
25
Globus pallidus, external segment
GPe
C57BL/6J
158373958
-0.34
1.70
3.58
0
Globus pallidus, external segment
GPe
Htr2aCre_KM207
300318924
-0.34
1.70
3.58
0
Globus pallidus, external segment
GPe
Ntrk1-IRES-Cre
265943460
-0.70
1.80
3.95
0
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
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Globus pallidus, external segment
GPe
Ntrk1-IRES-Cre
265944167
-0.34
1.70
3.58
0
Globus pallidus, internal segment
GPi
Htr2aCre_KM207
278501857
-0.70
1.80
3.95
0
Globus pallidus, internal segment
GPi
Ntrk1-IRES-Cre
292960052
-1.34
1.75
4.50
0
Globus pallidus, internal segment
GPi
Rbp4-Cre_KL100
305024724
-1.70
2.75
5.25
0
Gracile nucleus
GR
C57BL/6J
114400640
0.00
calamus
(-7.20
bregma)
0.25
0.15
0
Gracile nucleus
GR
Erbb4-2ACreERT2
268321221
0.20
calamus
(-7.00
bregma)
0.25
0.15
0
Gracile nucleus
GR
Sst-IRES-Cre
300843120
0.2
calamus
(-7.00
bregma)
0.25
0.15
0
Gustatory areas
GU
C57BL/6J
180404418
0.38
3.60
2.35
0
Gustatory areas
GU
C57BL/6J
272737914
1.10
3.25, 3.00
1.90,
2.35
0
Gustatory areas
GU
Cux2-IRES-Cre
264076854
1.78
2.40, 2.80
2.25
0
Gustatory areas
GU
Nr5a1-Cre
177892379
1.10
3.25, 3.00
1.90,
2.35
0
Gustatory areas
GU
Rbp4-Cre_KL100
272928602
1.10
3.25, 3.00
1.90,
2.35
0
Hypoglossal nucleus
XII
C57BL/6J
127350480
-0.16
calamus
(-7.48
bregma)
0.25
0.65
0
MARCH 2016 v.9
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TECHNICAL WHITE PAPER
Hypoglossal nucleus
XII
Chat-IRES-Cre
165973664
-0.16
calamus
(-7.48
bregma)
0.25
0.65
0
Hypoglossal nucleus
XII
Chat-IRES-Cre
177606140
-0.16
calamus
(-7.48
bregma)
0.35
0.65
0
Hypoglossal nucleus
XII
Scnn1a-Tg2-Cre
177904363
-0.16
calamus
(-7.48
bregma)
0.35
0.65
0
Inferior colliculus
IC
C57BL/6J
147162027
-4.96
1.40
0.85
0
Inferior colliculus
IC
Nos1-CreERT2
299761293
-5.02
0.50
0.65
0
Inferior colliculus
IC
Pdzk1ip1Cre_KD31
183375545
-5.20
1.25
1.30
0
Inferior colliculus
IC
Pdzk1ip1Cre_KD31
266966337
-5.02
0.50
0.65
0
Inferior colliculus
IC
Slc17a6-IRESCre
287448038
-5.20
1.25
1.30
0
Inferior colliculus
IC
Slc17a6-IRESCre
294174290
-4.48
0.50
1.85
0
Inferior colliculus
IC
Sst-IRES-Cre
305446876
-4.72
1.25
1.10
0
Inferior colliculus, central nucleus
ICc
C57BL/6J
113368085
-5.20
1.25
1.30
0
Inferior colliculus, central nucleus
ICc
Slc17a6-IRESCre
287452840
-4.72
1.25
1.10
0
Inferior colliculus, dorsal nucleus
ICd
C57BL/6J
116905391
-5.02
0.50
0.65
0
Inferior colliculus, external nucleus
ICe
C57BL/6J
100141596
-4.36
1.59
1.87
0
Inferior colliculus, external nucleus
ICe
Chrna2Cre_OE25
304857992
-5.20
1.25
1.30
0
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
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Inferior colliculus, external nucleus
ICe
Nxph4-2ACreERT2
287714197
-4.36
1.59
1.87
0
Inferior colliculus, external nucleus
ICe
Pvalb-IRES-Cre
277959325
-5.20
1.25
1.30
0
Inferior colliculus, external nucleus
ICe
Slc17a6-IRESCre
294199114
-4.36
1.87
2.58
0
Inferior colliculus, external nucleus
ICe
Sst-IRES-Cre
305447664
-5.20
1.25
2.80
0
Inferior olivary complex
IO
Calb2-IRES-Cre
182890735
-0.24
calamus
(-7.56
bregma)
1.12
2.30
0
Inferior olivary complex
IO
Crh-IRES-Cre
(BL)
167665302
0.00
calamus
(-7.32
bregma)
0.10
2.40
0
Inferior olivary complex
IO
Crh-IRES-Cre
(ZJH)
292622743
-0.24
calamus
(-7.56
Bregma)
1.12
2.30
0
Infralimbic area
ILA
C57BL/6J
157556400
1.70
0.40
2.00
0
Infralimbic area
ILA
Chrna2Cre_OE25
298272589
1.70
0.40
2.00
0
Infralimbic area
ILA
Cux2-IRES-Cre
287494320
-4.04
4.00
0.35
30
Infralimbic area
ILA
Grp-Cre_KH288
266583498
1.70
0.40
2.00
0
Infralimbic area
ILA
Oxtr-Cre_ON66
294399325
1.70
0.40
2.00
0
Infralimbic area
ILA
Rbp4-Cre_KL100
286313491
1.70
0.40
2.00
0
Infralimbic area
ILA
Syt17-Cre_NO14
299653551
1.70
0.40
2.00
0
Infralimbic area
ILA
Syt6-Cre_KI148
177889243
2.10
0.06, 0.33
1.50
0
Infralimbic area
ILA
Ucn3-Cre_KF43
266913950
2.68
0.65
1.64
0
MARCH 2016 v.9
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Interanterodorsal nucleus of the
thalamus
IAD
Crh-IRES-Cre
(BL)
264707643
-5.52
0.88
2.71
0
Intercalated amygdalar nucleus
IA
C57BL/6J
146012934
-0.94
2.60
4.60
0
Interfascicular nucleus raphe
IF
C57BL/6J
120572378
-3.52
0.08
4.30
0
Interfascicular nucleus raphe
IF
Calb2-IRES-Cre
310176384
-3.28
0.36
4.13
0
Interfascicular nucleus raphe
IF
Erbb4-2ACreERT2
267538735
-3.52
0.08
4.30
0
Interfascicular nucleus raphe
IF
Gad2-IRES-Cre
164985329
-3.52
0.08
4.30
0
Interfascicular nucleus raphe
IF
Slc17a6-IRESCre
287808449
-3.52
0.08
4.30
0
Intergeniculate leaflet of the lateral
geniculate complex
IGL
Gad2-IRES-Cre
293942897
-2.30
2.55
3.00
0
Intergeniculate leaflet of the lateral
geniculate complex
IGL
Plxnd1-Cre
301991713
-2.00
2.15
2.60
0
Intermediate reticular nucleus
IRN
C57BL/6J
126189322
-6.64
1.25
4.60
0
Intermediate reticular nucleus
IRN
C57BL/6J
126709328
-6.64
1.25
4.00
0
Intermediate reticular nucleus
IRN
C57BL/6J
127041126
0.00
calamus
(-7.32
bregma)
1.00
1.36
0
Intermediate reticular nucleus
IRN
C57BL/6J
158838128
-5.34
0.65
4.07
0
Intermediate reticular nucleus
IRN
C57BL/6J
159021559
-0.24
calamus
(-7.56
bregma)
1.12
2.28
0
Intermediate reticular nucleus
IRN
C57BL/6J
159024474
-0.24
calamus
(-7.56
bregma)
1.35
1.35
0
Intermediate reticular nucleus
IRN
C57BL/6J
175265301
-5.34
0.65
4.10
0
MARCH 2016 v.9
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Intermediate reticular nucleus
IRN
Dbh-Cre_KH212
287029186
-6.48
1.00
4.90
0
Intermediate reticular nucleus
IRN
Plxnd1-Cre
301464820
-6.00
1.15
4.57
0
Intermediate reticular nucleus
IRN
Pnmt-Cre
156253662
-6.24
0.85
4.30
0
Intermediate reticular nucleus
IRN
Slc17a6-IRESCre
302016107
-6.24
0.85
4.40
0
Intermediate reticular nucleus
IRN
Slc18a2Cre_OZ14
265633461
-0.24
calamus
(-7.56
bregma)
1.25
1.45
0
Intermediate reticular nucleus
IRN
Slc6a5Cre_KF109
160153696
-5.34
1.11
4.80
0
Intermediodorsal nucleus of the
thalamus
IMD
Grm2-Cre_MR90
182185289
-1.70
0.20
3.25
0
Intermediodorsal nucleus of the
thalamus
IMD
Lypd6Cre_KL156
298001595
-1.70
0.20
3.25
0
Intermediodorsal nucleus of the
thalamus
IMD
Plxnd1-Cre
293365328
-1.06
0.20
3.40
0
Intermediodorsal nucleus of the
thalamus
IMD
Syt17-Cre_NO14
286646170
-1.06
0.20
3.40
0
Intermediodorsal nucleus of the
thalamus
IMD
Ucn3-Cre_KF43
179902786
-1.06
1.15
3.35
20
Interpeduncular nucleus
IPN
C57BL/6J
175158844
-3.45
0.15
4.30
0
Interpeduncular nucleus
IPN
Drd3-Cre_KI196
304859407
-2.70
0.13
5.20
0
Interpeduncular nucleus
IPN
Gad2-IRES-Cre
303474463
-3.52
0.08
4.30
0
Interpeduncular nucleus
IPN
Nos1-CreERT2
299761999
-3.52
0.08
4.30
0
Interpeduncular nucleus
IPN
Ntrk1-IRES-Cre
184212995
-3.52
0.08
4.30
0
Interpeduncular nucleus
IPN
Slc32a1-IRESCre
171019710
-3.52
0.08
4.30
0
Interposed nucleus
IP
C57BL/6J
120493315
-6.24
1.50
2.25
0
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Interposed nucleus
IP
Gabrr3Cre_KC112
168664192
-5.20
1.25
2.80
0
Interposed nucleus
IP
Gad2-IRES-Cre
293550435
-6.24
1.50
2.60
0
Interposed nucleus
IP
Gpr26Cre_KO250
265928489
-6.24
1.50
2.60
0
Interposed nucleus
IP
Gpr26Cre_KO250
304996627
-5.88
2.25
2.19
0
Interposed nucleus
IP
Ntsr1Cre_GN220
264096952
-6.24
1.50
2.60
0
Interposed nucleus
IP
Slc17a6-IRESCre
304474221
-6.24
1.50
2.60
0
Interposed nucleus
IP
Slc32a1-IRESCre
304537794
-6.24
1.50
2.60
0
Lateral amygdalar nucleus
LA
C57BL/6J
120762196
-1.46
3.75
3.40
0
Lateral amygdalar nucleus
LA
Cux2-CreERT2
310437091
-1.46
3.75
3.40
0
Lateral amygdalar nucleus
LA
Gad2-IRES-Cre
293975337
-1.46
3.55
3.70
0
Lateral amygdalar nucleus
LA
Ppp1r17Cre_NL146
287027773
-1.46
3.55
3.70
0
Lateral dorsal nucleus of thalamus
LD
C57BL/6J
113784293
-1.22
1.25
2.44
0
Lateral dorsal nucleus of thalamus
LD
C57BL/6J
272967913
-1.82
1.25
2.50
0
Lateral dorsal nucleus of thalamus
LD
C57BL/6J
272969333
-1.22
1.25
2.45
0
Lateral dorsal nucleus of thalamus
LD
Calb2-IRES-Cre
298833033
-0.94
1.12
2.60
0
Lateral dorsal nucleus of thalamus
LD
Gal-Cre_KI87
113554008
-1.22
1.25
2.44
0
Lateral dorsal nucleus of thalamus
LD
Prkcd-GluClaCFP-IRES-Cre
267609756
-0.58
1.00
2.93
0
Lateral dorsal nucleus of thalamus
LD
Slc17a7-IRES2Cre
301618828
-2.00
2.15
2.60
0
Lateral habenula
LH
C57BL/6J
147353537
-1.70
0.42
2.60
0
MARCH 2016 v.9
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Lateral habenula
LH
Calb2-IRES-Cre
301057735
-1.58
0.68
2.75
0
Lateral habenula
LH
Grm2-Cre_MR90
292623457
-1.34
0.40
2.70
0
Lateral habenula
LH
Grm2-Cre_MR90
300236056
-1.70
0.42
2.45
0
Lateral hypothalamic area
LHA
C57BL/6J
112228391
-1.46
0.10
5.90
0
Lateral hypothalamic area
LHA
C57BL/6J
112372418
-0.58
3.40
4.94
40
Lateral hypothalamic area
LHA
C57BL/6J
112425523
-2.30
0.25
4.37
0
Lateral hypothalamic area
LHA
C57BL/6J
113313632
-0.70
1.12
5.00
0
Lateral hypothalamic area
LHA
C57BL/6J
113369603
-0.70
1.13
5.40
0
Lateral hypothalamic area
LHA
C57BL/6J
114046440
-1.34
0.95
4.55
0
Lateral hypothalamic area
LHA
C57BL/6J
117302771
-0.58
1.75
4.50
0
Lateral hypothalamic area
LHA
C57BL/6J
127470271
-1.94
0.90
5.00
0
Lateral hypothalamic area
LHA
C57BL/6J
158258062
-1.46
0.39
5.50
0
Lateral hypothalamic area
LHA
C57BL/6J
158373181
-0.58
1.75
4.50
0
Lateral hypothalamic area
LHA
Calb2-IRES-Cre
267213087
-0.94
1.10
4.88
0
Lateral hypothalamic area
LHA
Crh-IRES-Cre
(ZJH)
171068025
0.38
0.50
3.90
0
Lateral hypothalamic area
LHA
Esr1-2A-Cre
176887774
-1.50
0.78
5.75
0
Lateral hypothalamic area
LHA
Fezf1-2A-dCre
287667137
-1.06
1.70
5.55
0
Lateral hypothalamic area
LHA
Hcrt-Cre
298048079
-0.70
1.12
5.00
0
Lateral hypothalamic area
LHA
Hcrt-Cre
298048787
-1.94
0.90
5.00
0
Lateral hypothalamic area
LHA
Lepr-IRES-Cre
113225519
-1.34
1.00
4.84
0
Lateral hypothalamic area
LHA
Lepr-IRES-Cre
160296448
-1.90
0.25
5.40
0
Lateral hypothalamic area
LHA
Lypd6Cre_KL156
298078515
-2.80
0.80
5.15
0
MARCH 2016 v.9
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Lateral hypothalamic area
LHA
Lypd6Cre_KL156
298104533
-2.46
1.00
5.30
0
Lateral hypothalamic area
LHA
Oxt-IRES-Cre
113037759
-0.70
1.13
5.23
0
Lateral hypothalamic area
LHA
Oxt-IRES-Cre
265125894
-0.58
1.15
5.50
0
Lateral hypothalamic area
LHA
Plxnd1-Cre
293368154
-2.46
0.55
5.65
0
Lateral hypothalamic area
LHA
Pmch-Cre
113444277
-1.34
1.00
4.95
0
Lateral hypothalamic area
LHA
Pmch-Cre
113506174
-1.06
1.20
5.00
0
Lateral hypothalamic area
LHA
Pmch-Cre
142653395
-0.70
1.12
5.00
0
Lateral hypothalamic area
LHA
Pmch-Cre
171020416
-0.70
1.12
5.00
0
Lateral hypothalamic area
LHA
Ppp1r17Cre_NL146
267928135
-1.34
1.00
4.84
0
Lateral hypothalamic area
LHA
Ppp1r17Cre_NL146
278508779
-0.70
1.12
5.00
0
Lateral hypothalamic area
LHA
Ppp1r17Cre_NL146
278510197
-0.94
1.10
4.88
0
Lateral hypothalamic area
LHA
Ppp1r17Cre_NL146
286882342
-1.50
0.35
5.30
0
Lateral hypothalamic area
LHA
Sim1-Cre
156195758
-1.94
0.90
5.00
0
Lateral hypothalamic area
LHA
Sim1-Cre
165035106
-1.34
1.00
4.84
0
Lateral hypothalamic area
LHA
Sim1-Cre
170860092
-0.70
1.12
5.00
0
Lateral hypothalamic area
LHA
Sim1-Cre
177890956
-0.58
0.20
4.75
0
Lateral hypothalamic area
LHA
Slc32a1-IRESCre
304674547
-1.34
1.00
4.84
0
Lateral hypothalamic area
LHA
Tac2-IRES2-Cre
293254286
-0.46
1.25
4.88
0
Lateral hypothalamic area
LHA
Tac2-IRES2-Cre
300927483
-1.50
0.35
5.30
0
Lateral posterior nucleus of the
thalamus
LP
C57BL/6J
113846682
-3.16
2.10
2.85
0
MARCH 2016 v.9
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Lateral posterior nucleus of the
thalamus
LP
C57BL/6J
114399224
-2.18
1.45
2.44
0
Lateral posterior nucleus of the
thalamus
LP
C57BL/6J
266585624
-1.82
1.25
2.60
0
Lateral posterior nucleus of the
thalamus
LP
C57BL/6J
272873704
-3.16
2.05
2.65
0
Lateral posterior nucleus of the
thalamus
LP
Calb2-IRES-Cre
183282261
-1.22
1.25
2.44
0
Lateral posterior nucleus of the
thalamus
LP
Calb2-IRES-Cre
183282970
-2.18
1.45
2.44
0
Lateral posterior nucleus of the
thalamus
LP
Grik4-Cre
167439900
-2.18
1.45
2.44
0
Lateral posterior nucleus of the
thalamus
LP
Grik4-Cre
183175010
-2.18
1.45
2.44
0
Lateral posterior nucleus of the
thalamus
LP
Nos1-CreERT2
293888501
-3.16
2.10
2.85
0
Lateral posterior nucleus of the
thalamus
LP
Plxnd1-Cre
301466249
-2.30
2.00
2.60
0
Lateral posterior nucleus of the
thalamus
LP
Prkcd-GluClaCFP-IRES-Cre
267608343
-1.22
1.25
2.44
0
Lateral posterior nucleus of the
thalamus
LP
Prkcd-GluClaCFP-IRES-Cre
292319865
-2.30
2.00
2.60
0
Lateral posterior nucleus of the
thalamus
LP
Vipr2-Cre_KE2
182805258
-3.16
2.10
2.85
0
Lateral preoptic area
LPO
C57BL/6J
113553300
0.62
1.20
4.85
0
Lateral preoptic area
LPO
C57BL/6J
113554719
0.50
0.81
4.84
0
Lateral preoptic area
LPO
C57BL/6J
113783321
1.18
0.60
4.15
0
Lateral preoptic area
LPO
C57BL/6J
146470726
-2.80
4.40
2.25
0
Lateral preoptic area
LPO
C57BL/6J
175263771
0.50
0.80
5.00
0
MARCH 2016 v.9
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Lateral preoptic area
LPO
Crh-IRES-Cre
(BL)
293114113
-4.36
0.30
4.55
0
Lateral preoptic area
LPO
Ntrk1-IRES-Cre
292961470
0.50
0.90
4.85
0
Lateral preoptic area
LPO
Ntrk1-IRES-Cre
309794438
0.74
0.50
4.25
0
Lateral preoptic area
LPO
Slc17a6-IRESCre
293942188
0.50
0.81
4.84
0
Lateral reticular nucleus, magnocellular
part
LRNm
Crh-IRES-Cre
(BL)
277906744
-0.34
calamus
(-7.64
bregma)
1.15
2.30
0
Lateral reticular nucleus, magnocellular
part
LRNm
Pvalb-IRES-Cre
286725359
-0.24
calamus
(-7.56
Bregma)
1.12
2.30
0
Lateral reticular nucleus, magnocellular
part
LRNm
Scnn1a-Tg2-Cre
263553934
-0.24
calamus
(-7.56
bregma)
1.12
2.30
0
Lateral reticular nucleus, magnocellular
part
LRNm
Th-Cre_FI172
304969906
-0.24
calamus
(-7.56
Bregma)
1.12
2.30
0
Lateral septal nucleus
LS
C57BL/6J
272917631
0.38
0.30
2.30
0
Lateral septal nucleus
LS
Efr3aCre_NO108
300164356
0.86
0.45
2.91
0
Lateral septal nucleus, caudal
(caudodorsal) part
LSc
Slc18a2Cre_OZ14
301672044
0.38
0.30
2.30
0
Lateral septal nucleus, caudal
(caudodorsal) part
LSc
Sst-Cre-D
160294327
0.38
0.30
2.30
0
Lateral septal nucleus, caudal
(caudodorsal) part
LSc
Sst-IRES-Cre
300841699
0.38
0.30
2.30
0
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Lateral septal nucleus, rostral
(rostroventral) part
LSr
C57BL/6J
100141435
0.86
0.45
2.91
0
Lateral septal nucleus, rostral
(rostroventral) part
LSr
C57BL/6J
120436988
0.38
0.30
2.30
0
Lateral septal nucleus, rostral
(rostroventral) part
LSr
Cart-Tg1-Cre
178486024
-1.50
0.35
5.20
0
Lateral septal nucleus, rostral
(rostroventral) part
LSr
Gnrh1-Cre
160398593
0.98
0.25
4.60
0
Lateral septal nucleus, rostral
(rostroventral) part
LSr
Ppp1r17Cre_NL146
267810394
0.86
0.45
2.91
0
Lateral septal nucleus, rostral
(rostroventral) part
LSr
Prkcd-GluClaCFP-IRES-Cre
265946352
0.86
0.45
2.91
0
Lateral septal nucleus, rostral
(rostroventral) part
LSr
Slc18a2Cre_OZ14
301672755
0.86
0.45
2.91
0
Lateral septal nucleus, rostral
(rostroventral) part
LSr
Th-Cre_FI172
287533790
1.18
0.60
4.15
0
Lateral septal nucleus, ventral part
LSv
Calb2-IRES-Cre
182887258
0.10
0.40
3.67
0
Lateral vestibular nucleus
LAV
C57BL/6J
277618054
-6.00
1.40
3.20
0
Lateral vestibular nucleus
LAV
Slc17a6-IRESCre
300687607
-6.48
1.25
3.25
0
Lateral visual area
VISl
A930038C07RikTg1-Cre
166461899
-4.16
3.75
0.81
0
Lateral visual area
VISl
A930038C07RikTg1-Cre
264630019
-4.16
3.95
0.85
0
Lateral visual area
VISl
C57BL/6J
100141796
-4.04
4.00
0.35,
0.75
0
Lateral visual area
VISl
C57BL/6J
112373830
-4.60
3.80
0.45
30
Lateral visual area
VISl
Chrna2Cre_OE25
299782273
-4.04
4.00
0.35,
0.75
30
Lateral visual area
VISl
Cux2-IRES-Cre
272736450
-4.16
3.95
0.85
0
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Lateral visual area
VISl
Nr5a1-Cre
286554724
-4.04
4.00
0.35,
0.75
30
Lateral visual area
VISl
Ntsr1Cre_GN220
159320367
-4.16
3.75
0.81
0
Lateral visual area
VISl
Scnn1a-Tg3-Cre
184075100
-4.04
4.00
0.35,
0.75
20
Lateral visual area
VISl
Syt6-Cre_KI148
267031577
-4.04
3.80
1.90
0
Laterodorsal tegmental nucleus
LDT
Slc18a2Cre_OZ14
301671287
-5.34
0.50
2.70
0
Lobule II
CENT2
C57BL/6J
119848249
-5.68
0.50
2.32
0
Lobule II
CENT2
C57BL/6J
146012184
-5.20
0.17
2.70
0
Lobule II
CENT2
C57BL/6J
147134401
-5.40
0.68
2.75
0
Lobule II
CENT2
C57BL/6J
156872043
-5.40
0.50
2.75
0
Lobule III
CENT3
C57BL/6J
127398177
-5.68
0.50
1.45
0
Lobule III
CENT3
Nxph4-2ACreERT2
287713485
-6.36
0.75
2.10
0
Lobule III
CENT3
Pcp2Cre_GN135
147708352
-6.24
0.50
0.94
0
Lobule III
CENT3
Slc17a6-IRESCre
304543821
-6.36
0.75
2.10
0
Lobule IV
CUL4
Scnn1a-Tg3-Cre
113888575
-4.48
2.40
2.70
0
Lobule IV
CUL4
Scnn1a-Tg3-Cre
156255078
-4.60
2.40
2.55
0
Lobules IV-V
CUL4,5
C57BL/6J
112424102
-6.24
0.50
0.94
0
Lobules IV-V
CUL4,5
C57BL/6J
114473794
-5.90
0.50
0.40
0
Lobules IV-V
CUL4,5
Efr3aCre_NO108
299732033
-5.20
1.95
2.85
0
Lobules IV-V
CUL4,5
Gabra6-IRESCre
181128406
-6.24
0.50
0.94
0
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
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Lobules IV-V
CUL4, 5
Gad2-IRES-Cre
287809155
-6.36
0.75
2.10
0
Lobules IV-V
CUL4, 5
Grm2-Cre_MR90
292531359
-6.24
0.50
0.94
0
Lobules IV-V
CUL4,5
Pvalb-IRES-Cre
167202174
-6.24
0.50
0.94
0
Locus ceruleus
LC
C57BL/6J
277618762
-5.52
1.20
3.00
0
Locus ceruleus
LC
Dbh-Cre_KH212
159510205
-5.52
0.88
2.71
0
Locus ceruleus
LC
Dbh-Cre_KH212
159942862
-5.20
0.91
3.09
0
Locus ceruleus
LC
Gal-Cre_KI87
301210208
-5.52
0.88
2.71
0
Magnocellular nucleus
MA
Chat-IRES-Cre
161460864
0.62
1.20
4.85
0
Magnocellular nucleus
MA
Gad2-IRES-Cre
302736304
0.62
1.20
4.85
0
Magnocellular reticular nucleus
MARN
C57BL/6J
121145750
-5.88
2.25
5.00
25
Magnocellular reticular nucleus
MARN
C57BL/6J
127349111
0.00
calamus
(-7.32
bregma)
0.85
2.05
0
Magnocellular reticular nucleus
MARN
Gad2-IRES-Cre
302222934
-5.88
2.25
5.30
25
Magnocellular reticular nucleus
MARN
Gal-Cre_KI87
178283952
-0.24
calamus
(-7.56
bregma)
1.12
2.30
0
Magnocellular reticular nucleus
MARN
Pvalb-IRES-Cre
278066728
-5.02
0.50
5.70
0
Magnocellular reticular nucleus
MARN
Slc32a1-IRESCre
286647583
-5.02
0.50
5.70
0
Magnocellular reticular nucleus
MARN
Slc6a5Cre_KF109
160080778
-5.02
0.50
5.30
0
Main olfactory bulb
MOB
A930038C07RikTg1-Cre
264631432
4.28
1.20
0.70
0
Main olfactory bulb
MOB
C57BL/6J
100141222
4.28
0.50
2.31
0
MARCH 2016 v.9
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Main olfactory bulb
MOB
Cdhr1-Cre_KG66
146859480
4.28
0.50
2.31
0
Main olfactory bulb
MOB
Cdhr1-Cre_KG66
146921849
4.28
1.20
0.70
0
Main olfactory bulb
MOB
Cdhr1-Cre_KG66
175728165
3.08
0.45
2.55
0
Main olfactory bulb
MOB
Cdhr1-Cre_KG66
175731154
3.08
1.00
1.75
0
Main olfactory bulb
MOB
Gpr26Cre_KO250
304947087
4.28
0.50
2.31
0
Main olfactory bulb
MOB
Slc17a6-IRESCre
300644693
4.28
0.50
2.31
0
Main olfactory bulb
MOB
Slc6a3-Cre
166154193
4.28
0.50
2.31
0
Main olfactory bulb
MOB
Slc6a3-Cre
166156241
4.28
1.20
0.70
0
Main olfactory bulb
MOB
Slc6a3-Cre
182042349
3.08
0.45
2.55
0
Main olfactory bulb
MOB
Syt6-Cre_KI148
179642401
2.68
0.45
1.46
0
Medial amygdalar nucleus
MEA
C57BL/6J
146985623
-0.82
2.20
5.53
0
Medial amygdalar nucleus
MEA
Cart-Tg1-Cre
182041643
-0.94
1.88
5.20
0
Medial amygdalar nucleus
MEA
Crh-IRES-Cre
(ZJH)
204907355
-1.58
2.60
3.90
0
Medial amygdalar nucleus
MEA
Etv1-CreERT2
267813932
-1.22
2.34
4.75
0
Medial amygdalar nucleus
MEA
Fezf1-2A-dCre
267547788
-1.06
1.70
5.55
0
Medial amygdalar nucleus
MEA
Htr2aCre_KM207
293469501
-0.94
1.88
5.20
0
Medial amygdalar nucleus
MEA
Sim1-Cre
170860801
-1.06
1.70
5.55
0
Medial amygdalar nucleus, anterodorsal
part
MEAad
C57BL/6J
157550122
-0.70
2.00
5.20
0
Medial amygdalar nucleus, anterodorsal
part
MEAad
C57BL/6J
180981417
-0.70
2.20
5.00
0
Medial amygdalar nucleus, anterodorsal
part
MEAad
Cart-Tg1-Cre
168363874
-1.22
2.34
4.75
0
MARCH 2016 v.9
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Medial amygdalar nucleus, anterodorsal
part
MEAad
Nos1-CreERT2
304694870
-0.94
1.88
5.20
0
Medial amygdalar nucleus, anterodorsal
part
MEAad
Sim1-Cre
165034344
-1.22
2.34
4.75
0
Medial amygdalar nucleus,
anteroventral part
MEAav
Adcyap1-2A-Cre
272819994
-1.06
1.70
5.55
0
Medial amygdalar nucleus,
anteroventral part
MEAav
C57BL/6J
125361005
-0.94
1.88
5.20
0
Medial amygdalar nucleus,
anteroventral part
MEAav
Fezf1-2A-dCre
309386361
-1.06
1.70
5.55
0
Medial amygdalar nucleus,
anteroventral part
MEAav
Htr3aCre_NO152
305645132
-1.06
1.70
5.55
0
Medial amygdalar nucleus,
posterodorsal part
MEApd
Crh-IRES-Cre
(BL)
277856332
-1.82
2.65
4.25
0
Medial amygdalar nucleus,
posterodorsal part
MEApd
Slc6a3-Cre
286303000
-1.22
2.34
4.75
0
Medial amygdalar nucleus,
posteroventral part
MEApv
Sim1-Cre_KJ18
299896150
-1.58
1.80
5.45
0
Medial geniculate complex
MG
C57BL/6J
180520257
-3.28
2.00
2.80
0
Medial geniculate complex
MG
Etv1-CreERT2
113165340
-3.16
2.00
2.79
0
Medial geniculate complex
MG
Gal-Cre_KI87
183329991
-2.30
2.00
2.60
0
Medial geniculate complex
MG
Slc17a6-IRESCre
305269070
-3.16
2.10
2.85
0
Medial geniculate complex, dorsal part
MGd
Calb2-IRES-Cre
267493760
-2.30
2.00
2.60
0
Medial geniculate complex, ventral part
MGv
Calb2-IRES-Cre
299996344
-3.64
2.40
2.90
0
Medial geniculate complex, ventral part
MGv
Prkcd-GluClaCFP-IRES-Cre
178489574
-3.52
2.50
3.50
0
Medial habenula
MH
Chat-IRES-Cre
268321927
-1.70
0.42
2.45
0
Medial habenula
MH
Tac1-IRES2-Cre
300843826
-1.70
0.42
2.45
0
MARCH 2016 v.9
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Medial habenula
MH
Tac2-IRES2-Cre
265287564
-1.58
1.00
2.90
0
Medial mammillary nucleus
MM
Adcyap1-2A-Cre
307655867
-2.70
0.13
5.20
0
Medial mammillary nucleus
MM
C57BL/6J
148197327
-2.46
0.55
5.65
0
Medial mammillary nucleus
MM
Cart-Tg1-Cre
168364580
-2.35
0.13
5.10
0
Medial mammillary nucleus
MM
Grm2-Cre_MR90
287173396
-2.70
0.13
5.20
0
Medial mammillary nucleus
MM
Sim1-Cre
127396760
-2.30
0.50
5.20
0
Medial preoptic area
MPO
Adcyap1-2A-Cre
287246555
0.26
0.04
4.85
0
Medial preoptic area
MPO
C57BL/6J
119846838
0.26
0.35
4.60
0
Medial preoptic area
MPO
C57BL/6J
120280191
0.26
0.35
4.60
0
Medial preoptic area
MPO
C57BL/6J
127909584
0.46
0.50
4.80
0
Medial preoptic area
MPO
C57BL/6J
146660293
0.50
0.81
4.84
0
Medial preoptic area
MPO
C57BL/6J
158315810
0.50
0.81
4.84
0
Medial preoptic area
MPO
C57BL/6J
158738180
0.40
0.70
5.00
0
Medial preoptic area
MPO
Calb2-IRES-Cre
301061596
0.26
0.35
4.60
0
Medial preoptic area
MPO
Gad2-IRES-Cre
305270515
0.26
0.35
4.60
0
Medial preoptic area
MPO
Gal-Cre_KI87
182459635
0.26
0.04
4.85
0
Medial preoptic area
MPO
Ntrk1-IRES-Cre
277800288
0.98
0.15
4.65
0
Medial preoptic area
MPO
Slc17a6-IRESCre
292123352
0.38
0.70
5.00
0
Medial preoptic nucleus
MPN
C57BL/6J
126116142
0.38
0.70
5.00
0
Medial preoptic nucleus
MPN
Gad2-IRES-Cre
293549729
0.50
0.15
4.75
0
Medial preoptic nucleus
MPN
Gal-Cre_KI87
182460343
0.02
0.25
4.90
0
Medial preoptic nucleus
MPN
Kiss1-Cre
301989585
0.50
0.15
4.75
0
MARCH 2016 v.9
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Medial preoptic nucleus
MPN
Tac1-IRES2-Cre
294355509
0.26
0.35
4.60
0
Medial pretectal area
MPT
C57BL/6J
156979283
-2.80
0.25
2.40
0
Medial pretectal area
MPT
Gad2-IRES-Cre
168361750
-2.30
0.25
5.85
0
Medial septal nucleus
MS
C57BL/6J
100141597
0.62
0.02
3.40
0
Medial septal nucleus
MS
C57BL/6J
158257355
1.10
0.25
4.60
0
Medial septal nucleus
MS
Chat-IRES-Cre
156819600
0.62
0.02
3.40
0
Medial septal nucleus
MS
Drd3-Cre_KI196
298835859
1.70
0.65
4.03
0
Medial septal nucleus
MS
Gad2-IRES-Cre
303580293
0.62
0.02
3.40
0
Medial septal nucleus
MS
Gal-Cre_KI87
113696423
0.62
0.02
3.40
0
Medial septal nucleus
MS
Gnrh1-Cre
168094300
0.62
0.02
3.40
0
Medial septal nucleus
MS
Htr2aCre_KM207
293434703
1.18
0.25
3.41
0
Medial septal nucleus
MS
Ntrk1-IRES-Cre
265944939
0.62
0.02
3.40
0
Medial septal nucleus
MS
Oxtr-Cre_ON66
278259822
0.62
0.01
3.40
0
Medial vestibular nucleus
MV
C57BL/6J
121146455
-6.12
0.85
3.50
0
Medial vestibular nucleus
MV
Chrna2Cre_OE25
303709219
-6.36
0.25
3.55
0
Medial vestibular nucleus
MV
Ntrk1-IRES-Cre
292960764
-6.12
0.85
3.50
0
Medial vestibular nucleus
MV
Pnmt-Cre
143512399
-6.12
0.85
3.75
0
Medial vestibular nucleus
MV
Slc6a5Cre_KF109
157911126
-6.12
0.85
3.50
0
Medial vestibular nucleus
MV
Sst-IRES-Cre
300842406
-6.12
0.85
3.50
0
Mediodorsal nucleus of thalamus
MD
C57BL/6J
114291646
-0.58
0.50
3.43
0
Mediodorsal nucleus of thalamus
MD
C57BL/6J
156931568
-1.06
1.75
3.15
30
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Mediodorsal nucleus of thalamus
MD
C57BL/6J
173206592
-0.70
0.70
2.80
0
Mediodorsal nucleus of thalamus
MD
C57BL/6J
267494468
-1.94
0.50
3.20
0
Mediodorsal nucleus of thalamus
MD
C57BL/6J
272830456
-0.58
0.62
2.92
0
Mediodorsal nucleus of thalamus
MD
C57BL/6J
272875132
-1.06
1.15
3.35
20
Mediodorsal nucleus of thalamus
MD
C57BL/6J
272875838
-1.34
0.40
2.70
0
Mediodorsal nucleus of thalamus
MD
C57BL/6J
272970747
-1.46
0.10
3.35
0
Mediodorsal nucleus of thalamus
MD
Calb2-IRES-Cre
183329222
-1.34
0.50
3.40
0
Mediodorsal nucleus of thalamus
MD
Calb2-IRES-Cre
301060890
-1.34
0.50
3.40
0
Mediodorsal nucleus of thalamus
MD
Gal-Cre_KI87
116904684
-1.34
0.50
3.40
0
Mediodorsal nucleus of thalamus
MD
Gal-Cre_KI87
168002780
-0.70
0.60
2.90
0
Mediodorsal nucleus of thalamus
MD
Grik4-Cre
168300739
-1.46
0.44
3.20
0
Mediodorsal nucleus of thalamus
MD
Grik4-Cre
168301446
-0.82
0.25
2.80
0
Mediodorsal nucleus of thalamus
MD
Grp-Cre_KH288
183058837
-1.58
0.68
2.73
0
Mediodorsal nucleus of thalamus
MD
Ppp1r17Cre_NL146
268399145
-0.82
0.25
2.80
0
Mediodorsal nucleus of thalamus
MD
Ppp1r17Cre_NL146
278400363
-1.46
0.44
3.20
0
Mediodorsal nucleus of thalamus
MD
Prkcd-GluClaCFP-IRES-Cre
267607635
-1.46
0.44
3.20
0
Mediodorsal nucleus of thalamus
MD
Prkcd-GluClaCFP-IRES-Cre
267928844
-0.82
0.25
2.80
0
Mediodorsal nucleus of thalamus
MD
Slc17a6-IRESCre
181895006
-0.70
0.60
2.90
0
Mediodorsal nucleus of thalamus
MD
Slc17a6-IRESCre
294356922
-1.34
0.50
3.40
0
Mediodorsal nucleus of thalamus
MD
Syt17-Cre_NO14
286485585
-0.70
0.60
3.00
0
MARCH 2016 v.9
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Mediodorsal nucleus of thalamus
MD
Tac1-IRES2-Cre
300889379
-1.06
1.15
3.35
20
Mediodorsal nucleus of thalamus
MD
Vipr2-Cre_KE2
268076421
-1.34
0.50
3.40
0
Medullary reticular nucleus, ventral part
MDRNv
C57BL/6J
127353220
-0.24
calamus
(-7.56
bregma)
1.25
1.43
0
Medullary reticular nucleus, ventral part
MDRNv
C57BL/6J
273068974
-0.24
calamus
(-7.56
bregma)
0.95
2.30
0
Medullary reticular nucleus, ventral part
MDRNv
Slc17a6-IRESCre
302085421
-6.48
1.00
4.90
0
Midbrain reticular nucleus
MRN
C57BL/6J
113399428
-3.64
1.50
2.96
0
Midbrain reticular nucleus
MRN
C57BL/6J
114474520
-3.64
1.50
2.60
0
Midbrain reticular nucleus
MRN
C57BL/6J
120760759
-3.80
0.87
3.30
0
Midbrain reticular nucleus
MRN
C57BL/6J
126352037
-4.16
1.00
2.65
0
Midbrain reticular nucleus
MRN
C57BL/6J
127557915
-3.88
1.30
3.45
0
Midbrain reticular nucleus
MRN
C57BL/6J
127865687
-3.28
0.60
3.65
0
Midbrain reticular nucleus
MRN
C57BL/6J
127991964
-4.04
1.80
2.73
0
Midbrain reticular nucleus
MRN
C57BL/6J
139311530
-3.28
0.91
3.10
0
Midbrain reticular nucleus
MRN
C57BL/6J
147354242
-2.18
0.80
3.20
0
Midbrain reticular nucleus
MRN
C57BL/6J
156978574
-4.04
1.80
2.73
0
Midbrain reticular nucleus
MRN
C57BL/6J
174583904
-2.30
0.60
3.50
0
Midbrain reticular nucleus
MRN
C57BL/6J
273065264
-3.88
1.30
3.55
0
Midbrain reticular nucleus
MRN
Erbb4-2ACreERT2
180522266
-3.28
0.36
4.13
0
Midbrain reticular nucleus
MRN
Gad2-IRES-Cre
287598261
-3.80
0.04
2.85
0
MARCH 2016 v.9
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Midbrain reticular nucleus
MRN
Gad2-IRES-Cre
302723204
-3.28
0.60
3.65
0
Midbrain reticular nucleus
MRN
Htr2aCre_KM207
278401778
-2.92
1.25
2.76
0
Midbrain reticular nucleus
MRN
Pvalb-IRES-Cre
258914806
-3.28
0.60
3.65
0
Midbrain reticular nucleus
MRN
Th-Cre_FI172
304761539
-3.08
1.25
4.15
0
Midbrain trigeminal nucleus
MEV
Pvalb-IRES-Cre
267030155
-4.36
0.70
2.20
0
Motor nucleus of trigeminal
V
Chat-IRES-Cre
166052101
-5.20
1.35
3.10
0
Motor nucleus of trigeminal
V
Pcdh9-Cre
272829024
-5.20
1.40
3.55
0
Motor nucleus of trigeminal
V
Pvalb-IRES-Cre
182804552
-4.36
1.60
4.27
0
Motor nucleus of trigeminal
V
Scnn1a-Tg2-Cre
162019589
-5.20
1.40
3.31
0
Nodulus (X)
NOD
C57BL/6J
120874405
-6.64
0.50
2.55
0
Nodulus (X)
NOD
Gad2-IRES-Cre
305293222
-6.12
0.85
3.50
0
Nucleus accumbens
ACB
C57BL/6J
127255254
1.70
0.80
3.40
0
Nucleus accumbens
ACB
C57BL/6J
146045723
1.54
1.13
4.85
0
Nucleus accumbens
ACB
C57BL/6J
175373569
1.18
1.25
3.90
0
Nucleus accumbens
ACB
Calb2-IRES-Cre
264874516
2.10
0.75
4.05
0
Nucleus accumbens
ACB
Drd1a-Cre
168614604
1.18
0.60
4.15
0
Nucleus accumbens
ACB
Drd1a-Cre
168615344
1.70
0.80
3.40
0
Nucleus accumbens
ACB
Drd1a-Cre
170785775
1.54
1.13
4.85
0
Nucleus accumbens
ACB
Drd2-Cre_ER44
158020947
1.18
1.25
3.80
0
Nucleus accumbens
ACB
Drd2-Cre_ER44
167904966
1.54
1.13
4.85
0
Nucleus accumbens
ACB
Drd2-Cre_ER44
175732001
1.70
0.65
4.00
0
Nucleus accumbens
ACB
Drd3-Cre_KI196
300078901
0.86
0.50
3.90
0
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Nucleus accumbens
ACB
Drd3-Cre_KI196
300110369
-0.10
2.55
4.00
30
Nucleus accumbens
ACB
Gpr26Cre_KO250
286486329
2.10
0.75
4.20
0
Nucleus accumbens
ACB
Kcnc2-Cre
171411651
2.34
0.40
4.00
0
Nucleus accumbens
ACB
Ntrk1-IRES-Cre
265136608
1.18
0.60
4.15
0
Nucleus accumbens
ACB
Ntrk1-IRES-Cre
287993060
1.70
0.65
4.03
0
Nucleus ambiguus
AMB
Chat-IRES-Cre
264321572
-0.24
calamus
(-7.56
bregma)
1.25
1.45
0
Nucleus accumbens
ACB
Ntrk1-IRES-Cre
293008559
1.10
1.50
5.15
0
Nucleus accumbens
ACB
Ntrk1-IRES-Cre
309739641
1.18
1.25
3.80
0
Nucleus accumbens
ACB
Ntrk1-IRES-Cre
309740347
1.70
0.80
3.40
0
Nucleus incertus
NI
Ntrk1-IRES-Cre
265930674
-4.84
0.22
3.75
0
Nucleus incertus
NI
Ntrk1-IRES-Cre
277799582
-4.84
0.22
3.75
0
Nucleus of Darkschewitsch
ND
Pdzk1ip1Cre_KD31
267029447
-3.28
0.20
3.10
0
Nucleus of reunions
RE
Adcyap1-2A-Cre
204832205
-0.58
0.17
4.40
0
Nucleus of reunions
RE
C57BL/6J
113504763
-0.58
0.17
4.40
0
Nucleus of reunions
RE
C57BL/6J
174957972
-0.58
0.20
4.05
0
Nucleus of reunions
RE
C57BL/6J
175019536
-1.22
0.30
4.15
0
Nucleus of reunions
RE
C57BL/6J
175374982
-1.46
0.30
5.35
0
Nucleus of reunions
RE
Calb2-IRES-Cre
184158290
-0.58
0.17
4.20
0
Nucleus of reunions
RE
Cart-Tg1-Cre
265286700
-0.58
0.17
4.40
0
Nucleus of reunions
RE
Htr2aCre_KM207
278500868
-0.22
2.25
4.03
30
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Nucleus of reunions
RE
Prkcd-GluClaCFP-IRES-Cre
265947058
-0.58
0.17
4.40
0
Nucleus of reunions
RE
Rasgrf2-2A-dCre
310976160
-0.58
0.20
4.75
0
Nucleus of reunions
RE
Slc17a6-IRESCre
304617742
-0.80
0.25
4.85
0
Nucleus of reunions
RE
Ucn3-Cre_KF43
167025578
-0.94
0.25
4.52
0
Nucleus of the brachium of the inferior
colliculus
NB
Pdzk1ip1Cre_KD31
159995481
-4.04
1.80
2.73
0
Nucleus of the lateral lemniscus
NLL
C57BL/6J
119846129
-4.60
2.40
2.55
0
Nucleus of the lateral lemniscus
NLL
Scnn1a-Tg3-Cre
156313344
-4.24
2.36
3.58
0
Nucleus of the lateral lemniscus
NLL
Sst-IRES-Cre
309385637
-3.88
1.30
3.45
0
Nucleus of the lateral lemniscus, ventral
part
NLLv
Pdzk1ip1Cre_KD31
157766259
-4.36
1.60
4.27
0
Nucleus of the lateral olfactory tract
NLOT
C57BL/6J
138058320
-0.10
2.00
5.07
0
Nucleus of the lateral olfactory tract
NLOT
Sim1-Cre
159151138
-0.46
2.20
5.22
0
Nucleus of the lateral olfactory tract
NLOT
Slc17a6-IRESCre
294174996
-0.46
2.20
5.22
0
Nucleus of the optic tract
NOT
C57BL/6J
126523791
-2.80
1.00
2.15
0
Nucleus of the optic tract
NOT
C57BL/6J
158915602
-2.80
1.00
2.00
0
Nucleus of the posterior commissure
NPC
C57BL/6J
158737454
-2.18
0.80
3.20
0
Nucleus of the solitary tract
NTS
C57BL/6J
159648854
0.10
calamus
(-7.10
bregma)
0.25
0.25
0
Nucleus of the solitary tract
NTS
Gad2-IRES-Cre
302050617
0.2
calamus
(-7.00
bregma)
0.25
0.15
0
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Nucleus of the solitary tract
NTS
Gal-Cre_KI87
175816975
0.20
calamus
(-7.00
bregma)
0.25
0.15
0
Nucleus of the solitary tract
NTS
Pnmt-Cre
155735108
0.00
calamus
(-7.20
bregma)
0.25
0.15
0
Nucleus of the solitary tract
NTS
Rasgrf2-2A-dCre
310853453
0.20
0.25
0.15
0
Nucleus of the solitary tract
NTS
Slc6a5Cre_KF109
128003477
0.00
calamus
(-7.20
bregma)
0.25
0.15
0
Nucleus of the solitary tract
NTS
Tac1-IRES2-Cre
180525136
0.20
calamus
(-7.00
bregma)
0.25
0.15
0
Nucleus prepositus
PRP
C57BL/6J
127908173
-6.36
0.25
3.55
0
Nucleus raphe magnus
RM
C57BL/6J
147159899
-5.88
2.25
5.30
25
Nucleus raphe magnus
RM
C57BL/6J
175264587
-4.16
0.25
5.50
0
Nucleus raphe obscurus
RO
Crh-IRES-Cre
(ZJH)
267153115
0.00
calamus
(-7.32
bregma)
0.00
1.20
0
Nucleus raphe obscurus
RO
Crh-IRES-Cre
(ZJH)
301875208
-6.64
0.78
4.80
10
Nucleus raphe obscurus
RO
Gal-Cre_KI87
300209456
-6.64
0.78
4.80
10
Nucleus raphe obscurus
RO
Slc18a2Cre_OZ14
292794673
0.00
calamus
(-7.32
bregma)
0.05
1.00
0
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Nucleus raphe obscurus
RO
Slc6a4Cre_ET33
133286781
0.00
calamus
(-7.32
bregma)
0.00
1.00
0
Nucleus raphe obscurus
RO
Slc6a4Cre_ET33
141603895
-6.64
0.78
4.80
10
Nucleus raphe obscurus
RO
Slc6a4CreERT2_EZ13
167212217
-6.64
0.78
4.80
10
Nucleus raphe obscurus
RO
Slc6a4CreERT2_EZ13
168227692
0.00
calamus
(-7.32
bregma)
0.00
1.00
0
Nucleus raphe pontis
RPO
Cnnm2Cre_KD18
167376068
-4.72
0.25
4.40
0
Nucleus raphe pontis
RPO
Slc18a2Cre_OZ14
287095785
-4.84
0.22
3.75
0
Nucleus raphe pontis
RPO
Slc6a4Cre_ET33
267958444
-4.84
0.22
3.75
0
Oculomotor nucleus
III
C57BL/6J
121509005
-4.16
0.14
2.99
0
Oculomotor nucleus
III
Chat-IRES-Cre
177460028
-4.04
0.10
3.00
0
Oculomotor nucleus
III
Htr3aCre_NO152
311845265
-4.04
0.10
3.00
0
Oculomotor nucleus
III
Pvalb-IRES-Cre
266099165
-4.24
0.52
2.86
10
Olfactory tubercle
OT
C57BL/6J
114755099
2.34
0.40
4.00
0
Olfactory tubercle
OT
C57BL/6J
147632458
1.10
1.50
5.25
0
Olfactory tubercle
OT
C57BL/6J
157659671
1.54
1.15
5.00
0
Olfactory tubercle
OT
Drd2-Cre_ER44
167904255
1.10
1.50
5.15
0
Olfactory tubercle
OT
Ntrk1-IRES-Cre
292962283
1.54
1.13
4.85
0
Olivary pretectal nucleus
OP
C57BL/6J
113442864
-2.54
0.70
2.24
0
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Olivary pretectal nucleus
OP
Pdzk1ip1Cre_KD31
182031296
-2.35
0.70
2.24
0
Orbital area
ORB
Chrna2Cre_OE25
297892843
1.00
0.75
0.30,
0.75
0
Orbital area, lateral part
ORBl
A930038C07RikTg1-Cre
168164972
2.80
1.25
1.30,
1.67
0
Orbital area, lateral part
ORBl
C57BL/6J
112306316
2.80
1.25
1.30,
1.67
0
Orbital area, lateral part
ORBl
Chrna2Cre_OE25
278174451
2.80
1.25
1.30,
1.67
0
Orbital area, lateral part
ORBl
Cux2-IRES-Cre
183471174
2.80
1.25
1.30
0
Orbital area, lateral part
ORBl
Efr3aCre_NO108
298230624
2.80
1.25
1.30,
1.67
0
Orbital area, lateral part
ORBl
Gpr26Cre_KO250
265713683
2.80
1.25
1.30,
1.67
0
Orbital area, lateral part
ORBl
Grm2-Cre_MR90
264708349
2.80
1.25
1.30
0
Orbital area, lateral part
ORBl
Grp-Cre_KH288
288324211
2.80
1.25
1.30,
1.67
0
Orbital area, lateral part
ORBl
Nos1-CreERT2
268319809
2.80
1.25
1.30,
1.67
0
Orbital area, lateral part
ORBl
Nos1-CreERT2
293889216
2.80
1.25
1.30,
1.67
0
Orbital area, lateral part
ORBl
Nr5a1-Cre
159887627
-2.54
1.75
0.20,
0.55
0
Orbital area, lateral part
ORBl
Oxtr-Cre_ON66
294311830
2.80
1.25
1.30,
1.67
0
Orbital area, lateral part
ORBl
Rasgrf2-2A-dCre
303783725
2.80
1.25
1.30
0
Orbital area, lateral part
ORBl
Rbp4-Cre_KL100
156741826
2.80
1.25
1.30,
1.67
0
Orbital area, lateral part
ORBl
Syt6-Cre_KI148
126353451
2.80
1.25
1.30,
1.67
0
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Orbital area, lateral part
ORBl
Tlx3-Cre_PL56
293433283
2.80
1.25
1.30,
1.67
0
Orbital area, medial part
ORBm
A930038C07RikTg1-Cre
283019341
2.68
0.05, 0.45
1.46
0
Orbital area, medial part
ORBm
C57BL/6J
126860974
2.68
0.05, 0.45
1.46
0
Orbital area, medial part
ORBm
Chrna2Cre_OE25
298274021
2.10
0.06, 0.33
1.50
0
Orbital area, medial part
ORBm
Crh-IRES-Cre
(BL)
277855624
2.68
0.65
1.84
0
Orbital area, medial part
ORBm
Cux2-IRES-Cre
272781246
2.68
0.05, 0.45
1.46
0
Orbital area, medial part
ORBm
Cux2-IRES-Cre
293471629
2.68
0.05, 0.35
1.45
0
Orbital area, medial part
ORBm
Efr3aCre_NO108
286648290
2.68
0.05, 0.45
1.46
0
Orbital area, medial part
ORBm
Gpr26Cre_KO250
301323451
2.68
0.05, 0.35
1.45
0
Orbital area, medial part
ORBm
Htr2aCre_KM207
258916270
2.68
0.05, 0.45
1.46
0
Orbital area, medial part
ORBm
Htr2aCre_KM207
277956496
2.68
0.05, 0.45
1.46
0
Orbital area, medial part
ORBm
Ntsr1Cre_GN220
159511623
2.68
0.05, 0.45
1.46
0
Orbital area, medial part
ORBm
Syt6-Cre_KI148
159209586
2.68
0.05, 0.45
1.46
0
Orbital area, medial part
ORBm
Syt6-Cre_KI148
265820216
2.68
0.45
1.46
0
Orbital area, ventrolateral part
ORBvl
C57BL/6J
112423392
2.68
0.65
1.84
0
Orbital area, ventrolateral part
ORBvl
C57BL/6J
158435116
3.00
1.00
1.90
0
Orbital area, ventrolateral part
ORBvl
Grp-Cre_KH288
266564027
2.68
0.05, 0.45
1.46
0
Orbital area, ventrolateral part
ORBvl
Htr2aCre_KM207
183618845
2.80
1.25
1.30,
1.67
0
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Orbital area, ventrolateral part
ORBvl
Rbp4-Cre_KL100
167902586
2.68
0.05, 0.45
1.46
0
Orbital area, ventrolateral part
ORBvl
Rbp4-Cre_KL100
287769286
-0.10
2.55
4.00
30
Orbital area, ventrolateral part
ORBvl
Slc32a1-IRESCre
309580102
3.08
1.00
1.75
0
Orbital area, ventrolateral part
ORBvl
Sst-IRES-Cre
288263341
2.80
1.25
1.30,
1.67
0
Orbital area, ventrolateral part
ORBvl
Syt17-Cre_NO14
127560043
3.20
1.00
1.50
0
Parabigeminal nucleus
PBG
C57BL/6J
127091083
-4.16
2.25
2.27
0
Parabrachial nucleus
PB
Adcyap1-2A-Cre
301016900
-5.34
1.50
3.75
0
Parabrachial nucleus
PB
C57BL/6J
127085717
-5.52
0.88
2.71
0
Parabrachial nucleus
PB
C57BL/6J
127469566
-5.20
1.25
2.80
0
Parabrachial nucleus
PB
C57BL/6J
147635309
-4.48
1.15
3.00
0
Parabrachial nucleus
PB
C57BL/6J
268415561
-5.20
1.40
3.35
0
Parabrachial nucleus
PB
Calb2-IRES-Cre
183284388
-5.20
1.25
2.80
0
Parabrachial nucleus
PB
Chat-IRES-Cre
183901489
-5.52
0.88
2.71
0
Parabrachial nucleus
PB
Chat-IRES-Cre
264565965
-5.20
1.25
2.80
0
Parabrachial nucleus
PB
Gad2-IRES-Cre
303535149
-5.20
1.25
2.80
0
Parabrachial nucleus
PB
Grm2-Cre_MR90
292790567
-5.20
1.25
2.80
0
Parabrachial nucleus
PB
Grp-Cre_KH288
265487421
-5.20
1.25
2.80
0
Parabrachial nucleus
PB
Htr3aCre_NO152
311845972
-5.52
0.88
2.71
0
Parabrachial nucleus
PB
Nxph4-2ACreERT2
301991007
-5.34
0.50
2.70
0
Parabrachial nucleus
PB
Rasgrf2-2A-dCre
313141786
-5.52
0.88
2.71
0
Parabrachial nucleus
PB
Slc17a6-IRESCre
278401072
-5.02
1.20
2.30
0
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Parabrachial nucleus
PB
Slc17a6-IRESCre
305404551
-5.40
0.50
2.75
0
Parabrachial nucleus
PB
Syt17-Cre_NO14
167442042
-5.34
1.20
2.80
0
Parabrachial nucleus
PB
Tac1-IRES2-Cre
294356216
-5.20
1.25
2.80
0
Parabrachial nucleus
PB
Th-Cre_FI172
301016175
-5.20
1.25
2.80
0
Paracentral nucleus
PCN
Gal-Cre_KI87
168095041
-0.58
0.50
3.43
0
Paracentral nucleus
PCN
Grm2-Cre_MR90
166264185
-1.34
0.50
3.40
0
Paracentral nucleus
PCN
Grp-Cre_KH288
183071513
-1.34
0.50
3.40
0
Parafascicular nucleus
PF
C57BL/6J
266693274
-1.94
0.70
3.60
0
Parafascicular nucleus
PF
C57BL/6J
272968624
-1.94
0.70
3.50
0
Parafascicular nucleus
PF
Efr3aCre_NO108
299732738
-2.30
0.80
3.20
0
Parafascicular nucleus
PF
Rbp4-Cre_KL100
300642574
-2.30
0.80
3.20
0
Parafascicular nucleus
PF
Slc17a6-IRESCre
263785543
-2.06
0.45
4.00
0
Parafascicular nucleus
PF
Slc17a6-IRESCre
266412078
0.98
2.65
3.19
0
Parafascicular nucleus
PF
Slc17a6-IRESCre
309580808
-2.18
1.23
3.71
20
Parafascicular nucleus
PF
Slc18a2Cre_OZ14
301735080
-2.06
0.45
4.00
0
Parafascicular nucleus
PF
Vipr2-Cre_KE2
267959197
-1.58
0.68
2.73
0
Paraflocculus
PFL
C57BL/6J
119847544
-5.40
2.80
2.55
0
Paraflocculus
PFL
C57BL/6J
120438416
-5.40
2.80
2.55
0
Paraflocculus
PFL
C57BL/6J
158738894
-4.96
3.00
2.55
0
Paraflocculus
PFL
Grik4-Cre
182685522
-4.96
3.10
2.65
0
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Paraflocculus
PFL
Slc32a1-IRESCre
304675961
-6.12
2.25
2.90
0
Paragigantocellular reticular nucleus,
lateral part
PGRNl
C57BL/6J
127042540
-0.24
calamus
(-7.56
bregma)
1.12
2.28
0
Paragigantocellular reticular nucleus,
lateral part
PGRNl
C57BL/6J
175142304
-0.24
calamus
(-7.56
bregma)
1.12
2.30
0
Paragigantocellular reticular nucleus,
lateral part
PGRNl
C57BL/6J
181058463
-0.24
calamus
(-7.56
bregma)
1.12
2.30
0
Paragigantocellular reticular nucleus,
lateral part
PGRNl
Chat-IRES-Cre
161460153
-6.48
1.00
4.82
0
Paragigantocellular reticular nucleus,
lateral part
PGRNl
Gal-Cre_KI87
182458849
-0.24
calamus
(-7.56
bregma)
1.12
2.30
0
Paragigantocellular reticular nucleus,
lateral part
PGRNl
Scnn1a-Tg2-Cre
171409520
-0.24
calamus
(-7.56
Bregma)
1.12
2.30
0
Paramedian lobule
PRM
C57BL/6J
125801739
-7.20
2.25
1.63
0
Parasubiculum
PAR
C57BL/6J
100148554
-4.48
3.00
3.44
0
Parasubiculum
PAR
C57BL/6J
120280939
-4.60
2.40
2.55
0
Parasubiculum
PAR
Cux2-CreERT2
177322126
-4.48
3.00
3.44
0
Parasubiculum
PAR
Nos1-CreERT2
305071285
4.60
2.40
2.55
0
Parasubiculum
PAR
Scnn1a-Tg3-Cre
184075807
-4.24
2.50
3.60
0
Parasubiculum
PAR
Wfs1-Tg2CreERT2
292530653
-4.24
2.50
3.60
0
MARCH 2016 v.9
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TECHNICAL WHITE PAPER
Parasubiculum
PAR
Wfs1-Tg3CreERT2
182617186
-4.24
2.36
3.58
0
Parasubthalamic nucleus
PSTN
A930038C07RikTg1-Cre
264696942
-2.18
1.25
4.95
0
Parasubthalamic nucleus
PSTN
Ucn3-Cre_KF43
165974379
-2.18
1.25
4.95
0
Parataenial nucleus
PT
C57BL/6J
123662982
-0.10
2.55
4.00
30
Parataenial nucleus
PT
C57BL/6J
126843200
-0.48
0.38
3.58
0
Parataenial nucleus
PT
Cart-Tg1-Cre
176897793
-0.10
2.55
4.00
30
Parataenial nucleus
PT
Cck-IRES-Cre
159432479
-0.34
0.35
3.58
0
Parataenial nucleus
PT
Crh-IRES-Cre
(BL)
167373923
-0.70
0.50
3.43
0
Parataenial nucleus
PT
Crh-IRES-Cre
(BL)
266839077
0.38
0.50
3.90
0
Parataenial nucleus
PT
Slc17a6-IRESCre
305125123
-0.58
0.50
3.43
0
Parataenial nucleus
PT
Slc17a6-IRESCre
305449231
-0.34
0.35
3.58
0
Paraventricular hypothalamic nucleus
PVH
Avp-IRES2-Cre
183459175
-0.58
0.20
4.75
0
Paraventricular hypothalamic nucleus
PVH
Avp-IRES2-Cre
267997620
-0.58
0.20
4.75
0
Paraventricular hypothalamic nucleus
PVH
Avp-IRES2-Cre
287044088
-0.80
0.25
4.85
0
Paraventricular hypothalamic nucleus
PVH
Crh-IRES-Cre
(BL)
170784358
-0.58
3.40
4.94
40
Paraventricular hypothalamic nucleus
PVH
Crh-IRES-Cre
(BL)
266840498
-0.80
0.25
4.85
0
Paraventricular hypothalamic nucleus
PVH
Efr3aCre_NO108
299759881
-0.58
0.20
4.75
0
Paraventricular hypothalamic nucleus
PVH
Gad2-IRES-Cre
294040662
0.38
0.02
4.20
0
Paraventricular hypothalamic nucleus
PVH
Gad2-IRES-Cre
302221478
-0.58
0.20
4.75
0
MARCH 2016 v.9
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Paraventricular hypothalamic nucleus
PVH
Gal-Cre_KI87
176432524
-0.94
0.25
4.80
0
Paraventricular hypothalamic nucleus
PVH
Nos1-CreERT2
304998039
-0.58
0.20
4.75
0
Paraventricular hypothalamic nucleus
PVH
Oxt-IRES-Cre
112951097
-0.58
0.17
4.45
0
Paraventricular hypothalamic nucleus
PVH
Oxt-IRES-Cre
146983504
-0.58
3.40
4.94
40
Paraventricular hypothalamic nucleus
PVH
Oxt-IRES-Cre
147051682
-0.94
0.25
4.52
0
Paraventricular hypothalamic nucleus
PVH
Oxt-IRES-Cre
147136518
-0.58
3.40
4.94
40
Paraventricular hypothalamic nucleus
PVH
Oxt-IRES-Cre
166532512
-0.94
0.25
4.80
0
Paraventricular hypothalamic nucleus
PVH
Sim1-Cre
241280698
0.38
0.02
4.20
0
Paraventricular hypothalamic nucleus
PVH
Tac1-IRES2-Cre
300888673
-0.58
0.20
4.75
0
Paraventricular hypothalamic nucleus
PVH
Th-Cre_FI172
301014055
-0.58
0.20
4.75
0
Paraventricular hypothalamic nucleus
PVH
Ucn3-Cre_KF43
127470976
-0.58
3.40
4.94
40
Paraventricular nucleus of the thalamus
PVT
C57BL/6J
120875111
-1.58
1.00
2.90
20
Paraventricular nucleus of the thalamus
PVT
C57BL/6J
127255962
-1.06
1.76
3.15
30
Paraventricular nucleus of the thalamus
PVT
C57BL/6J
147162736
0.14
2.55
4.00
30
Paraventricular nucleus of the thalamus
PVT
C57BL/6J
180568155
-0.34
0.05
3.45
0
Paraventricular nucleus of the thalamus
PVT
C57BL/6J
272874417
-0.34
1.15
3.35
20
Paraventricular nucleus of the thalamus
PVT
Calb2-IRES-Cre
184157585
-1.06
1.15
3.35
20
Paraventricular nucleus of the thalamus
PVT
Efr3aCre_NO108
301209502
-1.06
1.15
3.35
20
Paraventricular nucleus of the thalamus
PVT
Gal-Cre_KI87
204908781
-0.34
1.15
3.35
20
Paraventricular nucleus of the thalamus
PVT
Grm2-Cre_MR90
175739791
-1.58
0.35
2.73
0
Paraventricular nucleus of the thalamus
PVT
Grm2-Cre_MR90
183225830
-0.34
1.15
3.35
20
Paraventricular nucleus of the thalamus
PVT
Ntrk1-IRES-Cre
263106751
-1.06
1.15
3.35
20
MARCH 2016 v.9
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Paraventricular nucleus of the thalamus
PVT
Oxtr-Cre_ON66
299448592
-1.06
1.15
3.35
20
Paraventricular nucleus of the thalamus
PVT
Ppp1r17Cre_NL146
278510903
-0.46
0.12
3.58
0
Paraventricular nucleus of the thalamus
PVT
Rasgrf2-2A-dCre
313324664
-1.06
1.15
3.35
20
Paraventricular nucleus of the thalamus
PVT
Syt17-Cre_NO14
299624500
-1.06
0.20
3.40
0
Parvicellular reticular nucleus
PARN
C57BL/6J
147354951
-5.80
1.30
4.20
0
Parvicellular reticular nucleus
PARN
Gad2-IRES-Cre
300208016
-5.80
1.30
4.20
0
Parvicellular reticular nucleus
PARN
Gad2-IRES-Cre
308981706
-5.80
1.30
4.20
0
Parvicellular reticular nucleus
PARN
Slc17a6-IRESCre
294173584
-6.64
1.25
4.00
0
Pedunculopontine nucleus
PPN
Chat-IRES-Cre
264566672
-4.48
1.15
3.50
0
Pedunculopontine nucleus
PPN
Lypd6Cre_KL156
298079222
-4.48
1.15
3.50
0
Pedunculopontine nucleus
PPN
Pvalb-IRES-Cre
293252166
-5.20
1.95
3.35
0
Periaqueductal gray
PAG
Adcyap1-2A-Cre
287247978
-4.24
0.52
2.86
10
Periaqueductal gray
PAG
C57BL/6J
113096571
-3.80
0.43
2.50
0
Periaqueductal gray
PAG
C57BL/6J
120761491
-5.02
0.75
1.98
0
Periaqueductal gray
PAG
C57BL/6J
128002057
-4.84
0.30
3.10
0
Periaqueductal gray
PAG
C57BL/6J
158376179
-3.52
0.08
4.30
0
Periaqueductal gray
PAG
C57BL/6J
272829745
-3.28
0.36
4.13
0
Periaqueductal gray
PAG
Cck-IRES-Cre
183562831
-4.04
0.10
3.00
0
Periaqueductal gray
PAG
Cck-IRES-Cre
299856390
-3.80
0.04
2.85
0
Periaqueductal gray
PAG
Dbh-Cre_KH212
300076066
-4.96
0.50
2.60
0
Periaqueductal gray
PAG
Gad2-IRES-Cre
162020630
-3.80
0.04
2.31
0
MARCH 2016 v.9
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Periaqueductal gray
PAG
Gad2-IRES-Cre
302053755
-4.36
0.50
2.01
0
Periaqueductal gray
PAG
Grm2-Cre_MR90
292624169
-5.02
0.75
1.98
0
Periaqueductal gray
PAG
Lypd6Cre_KL156
298079928
-4.96
0.50
2.60
0
Periaqueductal gray
PAG
Nxph4-2ACreERT2
287712779
-3.80
0.04
2.85
0
Periaqueductal gray
PAG
Oxtr-Cre_ON66
278261300
-2.30
0.25
3.90
0
Periaqueductal gray
PAG
Rbp4-Cre_KL100
301540850
-3.80
0.04
2.85
0
Periaqueductal gray
PAG
Rbp4-Cre_KL100
301541824
-3.80
0.04
2.85
0
Periaqueductal gray
PAG
Slc6a3-Cre
160538548
-4.36
0.18
2.10
0
Periaqueductal gray
PAG
Syt6-Cre_KI148
182144176
-1.58
1.00
2.95
20
Periaqueductal gray
PAG
Syt6-Cre_KI148
304949216
-4.24
0.52
2.86
10
Periaqueductal gray
PAG
Tac1-IRES2-Cre
180524412
-3.28
0.36
4.13
0
Periaqueductal gray
PAG
Th-Cre_FI172
272699357
-4.16
0.14
2.99
0
Periaqueductal gray
PAG
Vip-IRES-Cre
262188772
-4.24
0.52
2.86
10
Periaqueductal gray
PAG
Vipr2-Cre_KE2
182280207
-3.80
0.04
2.85
0
Perirhinal area
PERI
C57BL/6J
142656218
-4.24
4.00
1.65
0
Perirhinal area
PERI
C57BL/6J
180435652
-2.80
4.30
2.05
0
Periventricular hypothalamic nucleus,
posterior part
PVp
Agrp-IRES-Cre
167117360
-1.90
0.25
5.90
0
Periventricular hypothalamic nucleus,
posterior part
PVp
Gad2-IRES-Cre
168362462
-2.80
0.25
2.40
0
Periventricular hypothalamic nucleus,
posterior part
PVp
Gal-Cre_KI87
168005102
-1.90
0.25
5.90
0
Periventricular hypothalamic nucleus,
posterior part
PVp
Ins2-Cre
298178912
-1.90
0.25
5.90
0
MARCH 2016 v.9
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Periventricular hypothalamic nucleus,
posterior part
PVp
Lepr-IRES-Cre
179904203
-2.30
0.25
5.85
0
Periventricular hypothalamic nucleus,
posterior part
PVp
Slc32a1-IRESCre
264078267
-2.30
0.25
5.85
0
Periventricular hypothalamic nucleus,
preoptic part
PVpo
C57BL/6J
114472860
0.26
0.04
4.85
0
Piriform area
PIR
A930038C07RikTg1-Cre
286775476
-0.34
4.00, 3.75
3.00,
3.25
0
Piriform area
PIR
Adcyap1-2A-Cre
287225747
-0.46
3.45
4.80
0
Piriform area
PIR
C57BL/6J
112307046
0.98
2.85
3.14
0
Piriform area
PIR
C57BL/6J
127907465
1.42
2.80
3.50
0
Piriform area
PIR
C57BL/6J
131068390
-0.58
3.65
4.10
0
Piriform area
PIR
C57BL/6J
146857301
-1.46
4.10
3.70
0
Piriform area
PIR
C57BL/6J
146984209
-1.46
3.95
3.40
0
Piriform area
PIR
C57BL/6J
157654069
-0.34
3.90
3.20
0
Piriform area
PIR
C57BL/6J
158374671
-1.46
3.75
3.70
0
Piriform area
PIR
Cart-Tg1-Cre
171485060
-1.46
3.55
3.70
0
Piriform area
PIR
Cux2-CreERT2
286728190
-0.22
3.30
3.25
0
Piriform area
PIR
Cux2-CreERT2
310436191
0.98
2.85
3.14
0
Piriform area
PIR
Cux2-CreERT2
310439724
-0.46
3.00
4.40
0
Piriform area
PIR
Drd3-Cre_KI196
300109663
-1.46
4.00
3.70
0
Piriform area
PIR
Drd3-Cre_KI198
300168916
-1.46
4.00
3.70
0
Piriform area
PIR
Rbp4-Cre_KL100
298720898
-1.46
4.00
3.70
0
Piriform area
PIR
Slc32a1-IRESCre
305294666
-1.46
4.00
3.70
0
Piriform area
PIR
Syt17-Cre_NO14
184259031
-1.46
4.00
3.70
0
MARCH 2016 v.9
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Piriform area
PIR
Syt6-Cre_KI148
159433905
-0.34
4.00, 3.75
3.00,
3.25
0
Piriform area
PIR
Vip-IRES-Cre
299655676
-1.06
3.00
3.90
0
Piriform area
PIR
Vip-IRES-Cre
299897573
-0.58
3.65
4.10
0
Piriform-amygdalar area
PAA
Gad2-IRES-Cre
302740314
-1.70
2.75
5.25
0
Pontine central gray
PCG
C57BL/6J
142655513
-4.48
0.12
3.77
0
Pontine central gray
PCG
C57BL/6J
143513811
-5.20
0.06
3.25
0
Pontine central gray
PCG
C57BL/6J
158434409
-5.20
0.25
4.40
0
Pontine central gray
PCG
C57BL/6J
158435826
-5.40
0.68
2.90
0
Pontine central gray
PCG
Crh-IRES-Cre
(ZJH)
182224715
-5.52
0.88
2.71
0
Pontine central gray
PCG
Crh-IRES-Cre
(ZJH)
307928463
-4.84
0.22
3.75
0
Pontine central gray
PCG
Ntrk1-IRES-Cre
262215150
-5.40
0.50
2.75
0
Pontine central gray
PCG
Sst-IRES-Cre
310377782
-5.20
0.17
3.30
0
Pontine reticular nucleus
PRNr
C57BL/6J
127223428
-4.36
0.30
4.35
0
Pontine reticular nucleus
PRNr
C57BL/6J
152995635
-4.48
0.75
4.10
0
Pontine reticular nucleus
PRNr
C57BL/6J
156930126
-4.36
1.70
4.35
0
Pontine reticular nucleus
PRNr
Crh-IRES-Cre
(ZJH)
310695955
-4.72
0.25
4.40
0
Pontine reticular nucleus
PRNr
Pvalb-IRES-Cre
258316862
-4.60
0.50
5.30
0
Pontine reticular nucleus
PRNr
Slc6a5Cre_KF109
258315443
-4.36
1.60
4.27
0
Pontine reticular nucleus, caudal part
PRNc
C57BL/6J
125437216
-5.34
0.50
4.07
0
Pontine reticular nucleus, caudal part
PRNc
C57BL/6J
147633885
-5.34
0.50
4.07
0
Pontine reticular nucleus, caudal part
PRNc
C57BL/6J
272700063
-4.60
0.75
4.10
0
MARCH 2016 v.9
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Pontine reticular nucleus, caudal part
PRNc
C57BL/6J
272826010
-4.04
0.25
5.90
0
Pontine reticular nucleus, caudal part
PRNc
Slc6a5Cre_KF109
168515225
-4.48
0.75
4.10
0
Pontine reticular nucleus, caudal part
PRNc
Slc6a5Cre_KF109
300691325
-4.96
1.05
4.90
0
Pontine reticular nucleus, caudal part
PRNc
Slc17a6-IRESCre
309701202
-4.36
0.30
4.55
0
Posterior amygdalar nucleus
PA
Vip-IRES-Cre
299656382
-2.54
3.00
4.55
0
Posterior complex of the thalamus
PO
C57BL/6J
100147785
-2.06
1.25
2.97
0
Posterior complex of the thalamus
PO
C57BL/6J
146658879
-2.18
1.45
2.64
0
Posterior complex of the thalamus
PO
C57BL/6J
174781014
-1.70
1.25
3.05
0
Posterior complex of the thalamus
PO
C57BL/6J
180628971
-1.94
1.60
3.40
0
Posterior complex of the thalamus
PO
C57BL/6J
180708524
-1.50
1.25
3.05
0
Posterior complex of the thalamus
PO
Grik4-Cre
183011353
-2.06
1.25
2.97
0
Posterior complex of the thalamus
PO
Grik4-Cre
267999740
-2.06
1.25
2.97
0
Posterior complex of the thalamus
PO
Grik4-Cre
292212456
-2.06
1.25
2.97
0
Posterior complex of the thalamus
PO
Slc17a6-IRESCre
305425490
-2.06
1.25
2.97
0
Posterior complex of the thalamus
PO
Slc18a2Cre_OZ14
182892855
-1.82
1.50
3.25
0
Posterior complex of the thalamus
PO
Slc18a2Cre_OZ14
301674988
-1.82
1.60
3.30
0
Posterior hypothalamic nucleus
PH
C57BL/6J
100141434
-1.34
1.00
4.89
0
Posterior hypothalamic nucleus
PH
C57BL/6J
114045733
-2.35
0.13
4.98
0
Posterior hypothalamic nucleus
PH
C57BL/6J
127710392
-1.70
0.35
5.00
0
Posterior hypothalamic nucleus
PH
C57BL/6J
159649643
-1.50
0.35
5.20
0
MARCH 2016 v.9
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Posterior hypothalamic nucleus
PH
C57BL/6J
175374275
0.38
0.30
2.30
0
Posterior hypothalamic nucleus
PH
Calb2-IRES-Cre
267213793
-2.30
0.15
4.40
0
Posterior hypothalamic nucleus
PH
Cart-Tg1-Cre
176898557
0.38
0.50
3.90
0
Posterior hypothalamic nucleus
PH
Gad2-IRES-Cre
302086846
-2.30
0.15
4.40
0
Posterior hypothalamic nucleus
PH
Grm2-Cre_MR90
182182936
-2.35
0.13
5.10
0
Posterior hypothalamic nucleus
PH
Htr2aCre_KM207
293255030
-2.70
0.13
5.20
0
Posterior hypothalamic nucleus
PH
Oxtr-Cre_ON66
278260569
-2.30
0.15
4.40
0
Posterior hypothalamic nucleus
PH
Ppp1r17Cre_NL146
268204599
-2.30
0.15
4.40
0
Posterior hypothalamic nucleus
PH
Ppp1r17Cre_NL146
268208632
-2.30
0.25
3.90
0
Posterior hypothalamic nucleus
PH
Sim1-Cre
164986046
-2.30
0.25
4.37
0
Posterior limiting nucleus of the
thalamus
POL
Grm2-Cre_MR90
166267651
-3.16
1.60
2.89
0
Posterior limiting nucleus of the
thalamus
POL
Pdzk1ip1Cre_KD31
170947610
-3.16
1.60
2.85
0
Posterior parietal association areas
PTLp
A930038C07RikTg1-Cre
168165712
-2.54
1.75
0.20,
0.55
0
Posterior parietal association areas
PTLp
A930038C07RikTg1-Cre
292792724
-2.46
2.75
0.35,
0.75
0
Posterior parietal association areas
PTLp
C57BL/6J
100148503
-2.54
1.75
0.20
0
Posterior parietal association areas
PTLp
C57BL/6J
112229103
-2.54
1.20
0.40
0
Posterior parietal association areas
PTLp
C57BL/6J
126861679
-2.54
1.75
0.55,
0.20
0
Posterior parietal association areas
PTLp
C57BL/6J
277714322
-3.28
2.50
0.50
0
Posterior parietal association areas
PTLp
Cux2-IRES-Cre
184167484
-2.54
1.75
0.20
0
MARCH 2016 v.9
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Posterior parietal association areas
PTLp
Cux2-IRES-Cre
286301303
-2.46
2.75
0.35
0
Posterior parietal association areas
PTLp
Cux2-IRES-Cre
294434867
-2.54
1.75
0.20,
0.55
0
Posterior parietal association areas
PTLp
Efr3aCre_NO108
267761438
-2.54
1.75
0.20,
0.55
0
Posterior parietal association areas
PTLp
Efr3aCre_NO108
286773358
-3.28
2.50
0.25,
0.75
0
Posterior parietal association areas
PTLp
Efr3aCre_NO108
309515141
-3.16
1.55
0.17
0
Posterior parietal association areas
PTLp
Etv1-CreERT2
182896517
-2.54
1.75
0.55,
0.20
0
Posterior parietal association areas
PTLp
Gpr26Cre_KO250
267657327
-2.54
1.75
0.20,
0.55
0
Posterior parietal association areas
PTLp
Ntsr1Cre_GN220
156671933
-2.54
1.75
0.55,
0.20
0
Posterior parietal association areas
PTLp
Rbp4-Cre_KL100
272929308
-2.46
2.75
0.35,
0.75
0
Posterior parietal association areas
PTLp
Rorb-IRES2-Cre
287225041
-2.54
1.75
0.20,
0.55
0
Posterior parietal association areas
PTLp
Scnn1a-Tg3-Cre
184073678
-2.46
3.28
0.21,
0.65
30
Posterior parietal association areas
PTLp
Scnn1a-Tg3-Cre
268038969
-2.54
1.75
0.20,
0.55
0
Posterior parietal association areas
PTLp
Sim1-Cre_KJ18
293821389
-2.54
1.75
0.20,
0.55
0
Posterior parietal association areas
PTLp
Sim1-Cre_KJ18
297712045
-2.46
2.75
0.35,
0.75
0
Posterior parietal association areas
PTLp
Sst-IRES-Cre
288264047
-2.54
1.75
0.20,
0.55
0
Posterior parietal association areas
PTLp
Syt6-Cre_KI148
157769139
-2.54
1.75
0.20,
0.55
0
MARCH 2016 v.9
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Posterior parietal association areas
PTLp
Syt6-Cre_KI148
299820770
-2.46
2.75
0.35,
0.75
0
Posterior parietal association areas
PTLp
Tlx3-Cre_PL56
294533406
-2.54
1.75
0.20,
0.55
0
Posterior parietal association areas
PTLp
Tlx3-Cre_PL56
297233422
-3.16
1.55
0.17,
0.58
0
Posterior parietal association areas
PTLp
Tlx3-Cre_PL56
303616127
-2.46
2.75
0.35,
0.75
0
Posterior parietal association areas
PTLp
Trib2-2ACreERT2
287601808
-2.54
1.75
0.20,
0.55
0
Posterior pretectal nucleus
PPT
Pdzk1ip1Cre_KD31
264097661
-2.50
0.75
2.40
0
Posterolateral visual area
VISpl
C57BL/6J
272916202
-4.60
3.80
0.45
30
Posterolateral visual area
VISpl
Rbp4-Cre_KL100
286417464
-4.60
3.80
0.45
30
Posterolateral visual area
VISpl
Scnn1a-Tg3-Cre
257667118
-4.60
3.80
0.45
30
posteromedial visual area
VISpm
A930038C07RikTg1-Cre
286836394
-4.48
1.60
0.31
0
posteromedial visual area
VISpm
Nr5a1-Cre
177781745
-4.48
1.60
0.31
0
posteromedial visual area
VISpm
Ntsr1Cre_GN220
159554010
-4.48
1.60
0.31
0
posteromedial visual area
VISpm
Ntsr1Cre_GN220
297629282
-4.84
2.50
0.75
0
posteromedial visual area
VISpm
Oxtr-Cre_ON66
294312537
-4.84
2.50
0.31
0
posteromedial visual area
VISpm
Rbp4-Cre_KL100
168164230
-4.48
1.60
0.31
0
posteromedial visual area
VISpm
Rbp4-Cre_KL100
272930013
-4.84
2.50
0.31
0
posteromedial visual area
VISpm
Scnn1a-Tg3-Cre
184074388
-4.84
2.50
0.31
0
posteromedial visual area
VISpm
Scnn1a-Tg3-Cre
268040381
-4.48
1.60
0.31
0
posteromedial visual area
VISpm
Syt6-Cre_KI148
267032286
-4.84
2.50
0.75
0
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
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Postpiriform transition area
TR
C57BL/6J
126653015
-2.92
3.55
4.10
0
Postsubiculum
POST
C57BL/6J
126115436
-4.48
2.40
1.80
0
Postsubiculum
POST
C57BL/6J
127711098
-4.60
2.30
1.63
0
Postsubiculum
POST
Gad2-IRES-Cre
302217570
-4.16
2.25
2.27
0
Postsubiculum
POST
Htr2aCre_KM207
304694156
-4.04
2.00
1.50
0
Postsubiculum
POST
Oxtr-Cre_ON66
300623424
-4.04
2.00
1.50
0
Postsubiculum
POST
Scnn1a-Tg3-Cre
113934579
-4.04
2.00
1.50
0
Postsubiculum
POST
Scnn1a-Tg3-Cre
156314054
-4.60
2.30
1.63
0
Postsubiculum
POST
Slc17a6-IRESCre
167654019
-4.60
2.30
1.67
0
Prelimbic area
PL
A930038C07RikTg1-Cre
292374777
2.10
0.06, 0.33
1.50
0
Prelimbic area
PL
C57BL/6J
157711748
2.10
0.25
1.50
0
Prelimbic area
PL
Cux2-IRES-Cre
278433737
2.10
0.06, 0.33
1.50
0
Prelimbic area
PL
Cux2-IRES-Cre
294396492
2.10
0.06, 0.33
1.50
0
Prelimbic area
PL
Cux2-IRES-Cre
294434161
1.10
0.25
1.30
0
Prelimbic area
PL
Glt25d2Cre_NF107
305618479
2.10
0.06, 0.33
1.50
0
Prelimbic area
PL
Grp-Cre_KH288
266582782
2.10
0.06, 0.33
1.50
0
Prelimbic area
PL
Grp-Cre_KH288
292477301
2.68
0.05, 0.35
1.45
0
Prelimbic area
PL
Htr2aCre_KM207
266816894
2.10
0.06, 0.33
1.50
0
Prelimbic area
PL
Ntsr1Cre_GN220
161463521
2.10
0.06, 0.33
1.50
0
Prelimbic area
PL
Rbp4-Cre_KL100
263106036
2.10
0.06, 0.33
1.50
0
MARCH 2016 v.9
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Presubiculum
PRE
C57BL/6J
146984915
-3.80
2.40
2.85
0
Presubiculum
PRE
Grm2-Cre_MR90
287172689
-3.80
2.40
2.85
0
Presubiculum
PRE
Rbp4-Cre_KL100
287028480
-4.72
3.40
2.20,
2.60
0
Presubiculum
PRE
Satb2-Cre_MO23
178488859
-4.96
3.00
2.55
0
Presubiculum
PRE
Scnn1a-Tg3-Cre
287772112
-4.60
2.40
2.55
0
Presubiculum
PRE
Slc17a6-IRESCre
302084009
-4.60
2.40
2.55
0
Primary auditory area
AUDp
A930038C07RikTg1-Cre
156395997
-2.46
4.25
0.81
0
Primary auditory area
AUDp
C57BL/6J
100149109
-2.46
4.25
0.81
0
Primary auditory area
AUDp
C57BL/6J
120491896
-2.54
4.20
1.25
0
Primary auditory area
AUDp
Calb2-IRES-Cre
168455487
-0.70
3.50
0.35,
0.75
30
Primary auditory area
AUDp
Chrna2Cre_OE25
296047084
-2.46
4.35
0.90
0
Primary auditory area
AUDp
Cort-T2A-Cre
165975810
-2.46
4.25
0.81
0
Primary auditory area
AUDp
Crh-IRES-Cre
(BL)
183105218
-2.46
4.35
0.85
0
Primary auditory area
AUDp
Cux2-IRES-Cre
184159706
-2.46
4.35
0.85
0
Primary auditory area
AUDp
Etv1-CreERT2
156493815
-2.46
4.25
0.81
0
Primary auditory area
AUDp
Gad2-IRES-Cre
182934777
-2.46
4.35
0.85
0
Primary auditory area
AUDp
Gng7-Cre_KH71
157954927
-0.70
3.50
0.35,
0.75
30
Primary auditory area
AUDp
Gpr26Cre_KO250
181600380
-2.46
4.25
0.81
0
Primary auditory area
AUDp
Htr3aCre_NO152
305488671
-2.46
4.35
0.90
0
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
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Primary auditory area
AUDp
Nos1-CreERT2
267930268
-2.46
4.35
0.90
0
Primary auditory area
AUDp
Ntsr1Cre_GN220
266963362
-2.46
4.35
0.90
0
Primary auditory area
AUDp
Rbp4-Cre_KL100
182090318
-2.46
4.35
0.85
0
Primary auditory area
AUDp
Rorb-IRES2-Cre
287223629
-2.46
4.35
0.90
0
Primary auditory area
AUDp
Scnn1a-Tg3-Cre
166268376
-2.46
4.25
0.81
0
Primary auditory area
AUDp
Sim1-Cre_KJ18
293820681
-2.46
4.35
0.90
0
Primary auditory area
AUDp
Sst-IRES-Cre
182886547
-2.46
4.35
0.85
0
Primary auditory area
AUDp
Syt6-Cre_KI148
124060405
-2.46
4.25
0.81
0
Primary auditory area
AUDp
Trib2-2ACreERT2
182686935
-2.46
4.35
0.85
0
Primary auditory area
AUDp
Vip-IRES-Cre
182040934
-2.46
4.25
0.81
0
Primary motor area
MOp
A930038C07RikTg1-Cre
156394513
1.34
1.50
0.35,
0.75
0
Primary motor area
MOp
A930038C07RikTg1-Cre
287461719
0.62
1.50
0.35,
0.70
0
Primary motor area
MOp
A930038C07RikTg1-Cre
292374068
2.10
2.25
0.35,
1.00
30
Primary motor area
MOp
C57BL/6J
100141220
0.62
1.50
0.35,
0.70
0
Primary motor area
MOp
C57BL/6J
100141273
-0.34
1.50
0.45
0
Primary motor area
MOp
C57BL/6J
100141563
0.14
1.75
0.45
0
Primary motor area
MOp
C57BL/6J
100141780
1.10
2.00
0.30,
0.75
20
Primary motor area
MOp
C57BL/6J
112670853
2.10
2.25
0.35,
1.00
30
Primary motor area
MOp
C57BL/6J
112935169
-0.34
1.65
0.45
0
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
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Primary motor area
MOp
C57BL/6J
127084296
0.62
1.50
0.35,
0.70
0
Primary motor area
MOp
C57BL/6J
141602484
1.34
1.50
0.35,
0.75
0
Primary motor area
MOp
C57BL/6J
180709942
1.94
2.50
1.15
0
Primary motor area
MOp
C57BL/6J
180719293
2.10
2.40
0.40,
1.00
30
Primary motor area
MOp
C57BL/6J
180720175
-0.82
1.05
0.65
0
Primary motor area
MOp
Calb2-IRES-Cre
168454779
1.34
1.50
0.35,
0.75
0
Primary motor area
MOp
Chrna2Cre_OE25
267750528
1.34
1.50
0.35,
0.75
0
Primary motor area
MOp
Chrna2Cre_OE25
298273313
0.62
1.50
0.35,
0.70
0
Primary motor area
MOp
Chrnb4Cre_OL57
297987980
2.10
2.25
0.35,
1.00
30
Primary motor area
MOp
Cort-T2A-Cre
157826227
1.34
1.50
0.35,
0.75
0
Primary motor area
MOp
Crh-IRES-Cre
(BL)
183103805
1.34
1.50
0.35,
0.75
0
Primary motor area
MOp
Cux2-IRES-Cre
168002073
1.34
1.50
0.35
0
Primary motor area
MOp
Cux2-IRES-Cre
182616478
-0.54
1.65
0.45
0
Primary motor area
MOp
Cux2-IRES-Cre
263781454
0.14
0.90
0.40
0
Primary motor area
MOp
Cux2-IRES-Cre
266645328
2.10
2.25
0.35
30
Primary motor area
MOp
Cux2-CreERT2
310194040
1.70
1.85
2.83
0
Primary motor area
MOp
Efr3aCre_NO108
278258780
2.10
2.25
0.35,
1.00
30
Primary motor area
MOp
Efr3aCre_NO108
288169135
0.62
1.50
0.35,
0.70
0
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
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Primary motor area
MOp
Erbb4-2ACreERT2
127908879
1.34
1.50
0.35,
0.75
0
Primary motor area
MOp
Esr1-2A-Cre
264249312
-1.50
0.78
5.76
0
Primary motor area
MOp
Etv1-CreERT2
167569313
1.34
1.50
0.35,
0.75
0
Primary motor area
MOp
Gad2-IRES-Cre
167440619
1.34
1.50
0.35,
0.75
0
Primary motor area
MOp
Gpr26Cre_KO250
181598954
1.34
1.50
0.35,
0.75
0
Primary motor area
MOp
Gpr26Cre_KO250
301267162
2.10
2.25
0.35,
1.00
30
Primary motor area
MOp
Grp-Cre_KH288
265289624
0.26
0.27
1.25
0
Primary motor area
MOp
Htr2aCre_KM207
183617432
1.34
1.50
0.35,
0.75
0
Primary motor area
MOp
Htr2aCre_KM207
258915564
2.10
2.25
0.35,
1.00
30
Primary motor area
MOp
Htr3aCre_NO152
305487964
1.34
1.50
0.35,
0.75
0
Primary motor area
MOp
Nr5a1-Cre
265929196
1.34
1.50
0.35,
0.75
0
Primary motor area
MOp
Ntsr1Cre_GN220
120584036
1.34
1.50
0.35,
0.75
0
Primary motor area
MOp
Ntsr1Cre_GN220
157909001
-0.34
1.65
0.45
0
Primary motor area
MOp
Ntsr1Cre_GN220
159372889
2.10
2.25
0.35,
1.00
30
Primary motor area
MOp
Plxnd1-Cre
297669605
1.34
1.50
0.35,
0.75
0
Primary motor area
MOp
Pvalb-IRES-Cre
158138440
1.34
1.50
0.35,
0.75
0
Primary motor area
MOp
Rasgrf2-2A-dCre
298718072
1.34
1.50
0.35
0
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
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Primary motor area
MOp
Rbp4-Cre_KL100
120814821
1.34
1.50
0.35,
0.75
0
Primary motor area
MOp
Rbp4-Cre_KL100
166082128
2.10
2.25
0.35,
1.00
30
Primary motor area
MOp
Rbp4-Cre_KL100
166082842
-0.34
1.65
0.45
0
Primary motor area
MOp
Rbp4-Cre_KL100
182803137
-0.34
1.65
0.45
0
Primary motor area
MOp
Sim1-Cre_KJ18
287807030
1.34
1.50
0.35,
0.75
0
Primary motor area
MOp
Sim1-Cre_KJ18
287807743
1.34
1.50
0.35,
0.75
0
Primary motor area
MOp
Sim1-Cre_KJ18
297711339
0.62
1.50
0.35,
0.70
0
Primary motor area
MOp
Sim1-Cre_KJ18
297946935
2.10
2.25
0.35,
1.00
30
Primary motor area
MOp
Sst-IRES-Cre
277800995
1.34
1.50
0.35,
0.75
0
Primary motor area
MOp
Syt6-Cre_KI148
122642490
1.34
1.50
0.35,
0.75
0
Primary motor area
MOp
Syt6-Cre_KI148
168229113
0.62
1.50
0.35,
0.70
0
Primary motor area
MOp
Tac1-IRES2-Cre
181259279
1.34
1.50
0.35,
0.75
0
Primary motor area
MOp
Tlx3-Cre_PL56
288169842
1.34
1.50
0.35,
0.75
0
Primary motor area
MOp
Trib2-2ACreERT2
266176167
1.34
1.50
0.35,
0.75
0
Primary motor area
MOp
Vip-IRES-Cre
179904912
1.34
1.50
0.35,
0.75
0
Primary somatosensory area
SSp
Nr5a1-Cre
277851379
-2.46
3.28
0.21,
0.65
30
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
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Primary somatosensory area
SSp
Nr5a1-Cre
293548317
-2.46
2.75
0.35,
0.75
0
Primary somatosensory area, barrel
field
SSp-bfd
A930038C07RikTg1-Cre
171276330
-0.70
3.50
0.35,
0.75
30
Primary somatosensory area, barrel
field
SSp-bfd
A930038C07RikTg1-Cre
177907797
-1.82
3.00
0.35,
0.75
30
Primary somatosensory area, barrel
field
SSp-bfd
A930038C07RikTg1-Cre
182467026
-0.70
3.50
0.35,
0.75
30
Primary somatosensory area, barrel
field
SSp-bfd
A930038C07RikTg1-Cre
298326521
-0.22
3.88, 3.38
1.66
0
Primary somatosensory area, barrel
field
SSp-bfd
C57BL/6J
100141473
-2.54
3.50
0.45
30
Primary somatosensory area, barrel
field
SSp-bfd
C57BL/6J
112162251
-0.58
3.50
0.35,
0.75
30
Primary somatosensory area, barrel
field
SSp-bfd
C57BL/6J
112373124
0.26
3.50
0.35,
0.75
30
Primary somatosensory area, barrel
field
SSp-bfd
C57BL/6J
112882565
-2.46
3.75
0.65
0
Primary somatosensory area, barrel
field
SSp-bfd
C57BL/6J
112951804
-1.70
3.88, 3.38
1.25
0
Primary somatosensory area, barrel
field
SSp-bfd
C57BL/6J
126908007
-0.70
3.50
0.35,
0.75
30
Primary somatosensory area, barrel
field
SSp-bfd
C57BL/6J
127866392
-1.70
4.00
0.65
0
Primary somatosensory area, barrel
field
SSp-bfd
Calb2-IRES-Cre
168513750
-2.46
4.25
0.81
0
Primary somatosensory area, barrel
field
SSp-bfd
Cart-Tg1-Cre
159602992
-1.46
3.55
3.70
0
Primary somatosensory area, barrel
field
SSp-bfd
Chrna2Cre_OE25
267749821
-0.70
3.50
0.35,
0.75
30
Primary somatosensory area, barrel
field
SSp-bfd
Chrna2Cre_OE25
293889922
-1.82
3.20
0.35,
0.75
30
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
page 78 of 117
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Allen Mouse Brain Connectivity Atlas
TECHNICAL WHITE PAPER
Primary somatosensory area, barrel
field
SSp-bfd
Cort-T2A-Cre
167374643
-0.70
3.50
0.35,
0.75
30
Primary somatosensory area, barrel
field
SSp-bfd
Crh-IRES-Cre
(BL)
266913240
-0.70
3.50
0.35,
0.75
30
Primary somatosensory area, barrel
field
SSp-bfd
Cux2-IRES-Cre
168003640
-0.70
3.50
0.35
30
Primary somatosensory area, barrel
field
SSp-bfd
Cux2-IRES-Cre
266486371
-1.82
3.20
0.35
30
Primary somatosensory area, barrel
field
SSp-bfd
Drd3-Cre_KI196
293728197
-0.70
3.50
0.35,
0.75
30
Primary somatosensory area, barrel
field
SSp-bfd
Drd3-Cre_KI196
297671018
-1.82
3.20
0.35,
0.75
30
Primary somatosensory area, barrel
field
SSp-bfd
Drd3-Cre_KI196
309427991
0.26
3.50
0.35
30
Primary somatosensory area, barrel
field
SSp-bfd
Drd3-Cre_KI196
309514434
-0.70
3.50
1.70
0
Primary somatosensory area, barrel
field
SSp-bfd
Efr3aCre_NO108
267660272
-0.70
3.50
0.35,
0.75
30
Primary somatosensory area, barrel
field
SSp-bfd
Efr3aCre_NO108
286648997
-1.82
3.20
0.35,
0.75
30
Primary somatosensory area, barrel
field
SSp-bfd
Efr3aCre_NO108
292318449
0.26
3.50
0.35,
0.75
30
Primary somatosensory area, barrel
field
SSp-bfd
Erbb4-2ACreERT2
127993375
-0.70
3.50
0.35,
0.75
30
Primary somatosensory area, barrel
field
SSp-bfd
Etv1-CreERT2
286772650
-0.70
3.50
0.35,
0.75
30
Primary somatosensory area, barrel
field
SSp-bfd
Gad2-IRES-Cre
167441329
-0.70
3.50
0.35,
0.75
0
Primary somatosensory area, barrel
field
SSp-bfd
Gng7-Cre_KH71
158017916
-4.48
2.70
0.35
0
Primary somatosensory area, barrel
field
SSp-bfd
Gpr26Cre_KO250
175819113
-1.82
3.00
0.35,
0.75
30
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
page 79 of 117
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TECHNICAL WHITE PAPER
Primary somatosensory area, barrel
field
SSp-bfd
Gpr26Cre_KO250
181599674
-0.70
3.50
0.35,
0.75
30
Primary somatosensory area, barrel
field
SSp-bfd
Htr3aCre_NO152
305487234
-0.70
3.50
0.35,
0.75
30
Primary somatosensory area, barrel
field
SSp-bfd
Nos1-CreERT2
182043055
-0.70
3.50
0.35,
0.75
30
Primary somatosensory area, barrel
field
SSp-bfd
Nr5a1-Cre
176881134
-1.82
3.00
0.35,
0.75
30
Primary somatosensory area, barrel
field
SSp-bfd
Nr5a1-Cre
177322838
-0.70
3.88, 3.38
1.66
0
Primary somatosensory area, barrel
field
SSp-bfd
Ntsr1Cre_GN220
159321097
-1.82
3.00
0.35,
0.75
30
Primary somatosensory area, barrel
field
SSp-bfd
Ntsr1Cre_GN220
159651770
0.26
3.50
0.35,
0.75
30
Primary somatosensory area, barrel
field
SSp-bfd
Ntsr1Cre_GN220
181180790
-0.70
3.50
0.35,
0.75
30
Primary somatosensory area, barrel
field
SSp-bfd
Ntsr1Cre_GN220
287037604
-0.34
3.50
2.95
0
Primary somatosensory area, barrel
field
SSp-bfd
Ntsr1Cre_GN220
297628576
-2.46
2.75
0.35,
0.75
0
Primary somatosensory area, barrel
field
SSp-bfd
Ntsr1Cre_GN220
303617548
-0.22
3.38, 3.88
1.66
0
Primary somatosensory area, barrel
field
SSp-bfd
Penk-IRES2-Cre
306268688
-0.70
3.50
0.35,
0.75
30
Primary somatosensory area, barrel
field
SSp-bfd
Plxnd1-Cre
297668898
-0.70
3.50
0.35,
0.75
30
Primary somatosensory area, barrel
field
SSp-bfd
Pvalb-IRES-Cre
158139151
-0.70
3.50
0.35,
0.75
30
Primary somatosensory area, barrel
field
SSp-bfd
Pvalb-IRES-Cre
176496282
-0.70
3.50
0.35,
0.75
30
Primary somatosensory area, barrel
field
SSp-bfd
Rasgrf2-2A-dCre
298718778
-0.70
3.50
0.35
30
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
page 80 of 117
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Allen Mouse Brain Connectivity Atlas
TECHNICAL WHITE PAPER
Primary somatosensory area, barrel
field
SSp-bfd
Rbp4-Cre_KL100
120875816
-0.70
3.50
0.35,
0.75
30
Primary somatosensory area, barrel
field
SSp-bfd
Rbp4-Cre_KL100
120916102
-2.46
4.25
0.81
0
Primary somatosensory area, barrel
field
SSp-bfd
Rbp4-Cre_KL100
249327301
0.26
3.50
0.35,
0.75
30
Primary somatosensory area, barrel
field
SSp-bfd
Rbp4-Cre_KL100
272735030
-1.82
3.20
0.35,
0.75
30
Primary somatosensory area, barrel
field
SSp-bfd
Rbp4-Cre_KL100
298179622
-2.46
4.25
0.81
0
Primary somatosensory area, barrel
field
SSp-bfd
Rbp4-Cre_KL100
303785454
0.26
3.50
0.35
30
Primary somatosensory area, barrel
field
SSp-bfd
Rorb-IRES2-Cre
287174103
-0.70
3.50
0.35,
0.75
30
Primary somatosensory area, barrel
field
SSp-bfd
Rorb-IRES2-Cre
301583889
-0.70
3.50
0.35,
0.75
30
Primary somatosensory area, barrel
field
SSp-bfd
Scnn1a-Tg3-Cre
159888336
-0.70
3.50
0.35,
0.75
30
Primary somatosensory area, barrel
field
SSp-bfd
Scnn1a-Tg3-Cre
181818339
-0.70
3.88, 3.38
1.66
0
Primary somatosensory area, barrel
field
SSp-bfd
Scnn1a-Tg3-Cre
181819064
0.26
3.50
0.35,
0.75
30
Primary somatosensory area, barrel
field
SSp-bfd
Scnn1a-Tg3-Cre
183374804
-1.82
3.20
0.35,
0.75
30
Primary somatosensory area, barrel
field
SSp-bfd
Scnn1a-Tg3-Cre
257666283
-0.22
3.88, 3.38
1.66
0
Primary somatosensory area, barrel
field
SSp-bfd
Sim1-Cre_KJ18
297710633
-1.82
3.20
0.35,
0.75
30
Primary somatosensory area, barrel
field
SSp-bfd
Sim1-Cre_KJ18
297713365
-0.70
4.00, 3.50
1.70
0
Primary somatosensory area, barrel
field
SSp-bfd
Sim1-Cre_KJ18
297948420
0.26
3.50
0.35,
0.75
30
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
page 81 of 117
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TECHNICAL WHITE PAPER
Primary somatosensory area, barrel
field
SSp-bfd
Sim1-Cre_KJ18
297985755
-0.22
3.88, 3.38
1.66
0
Primary somatosensory area, barrel
field
SSp-bfd
Sim1-Cre_KJ18
298760261
-0.70
3.50
0.35,
0.75
0
Primary somatosensory area, barrel
field
SSp-bfd
Slc18a2Cre_OZ14
263370720
-0.70
3.50
0.35,
0.75
30
Primary somatosensory area, barrel
field
SSp-bfd
Slc18a2Cre_OZ14
265820951
-1.82
3.20
0.35,
0.75
30
Primary somatosensory area, barrel
field
SSp-bfd
Slc18a2Cre_OZ14
306959448
0.26
3.50
0.35,
0.75
30
Primary somatosensory area, barrel
field
SSp-bfd
Sst-IRES-Cre
277801701
-0.70
3.50
0.35,
0.75
30
Primary somatosensory area, barrel
field
SSp-bfd
Syt6-Cre_KI148
123664417
-0.70
3.50
0.35,
0.75
30
Primary somatosensory area, barrel
field
SSp-bfd
Syt6-Cre_KI148
159223769
-1.82
3.00
0.35,
0.75
30
Primary somatosensory area, barrel
field
SSp-bfd
Syt6-Cre_KI148
168096467
-0.70
3.88, 3.38
1.66
0
Primary somatosensory area, barrel
field
SSp-bfd
Syt6-Cre_KI148
168229820
0.26
3.50
0.35,
0.75
0
Primary somatosensory area, barrel
field
SSp-bfd
Syt6-Cre_KI148
178487444
-2.46
3.28
0.21,
0.65
30
Primary somatosensory area, barrel
field
SSp-bfd
Tac1-IRES2-Cre
181371331
-0.70
3.50
0.35,
0.75
30
Primary somatosensory area, barrel
field
SSp-bfd
Tlx3-Cre_PL56
288170549
-0.70
3.50
0.35,
0.75
30
Primary somatosensory area, barrel
field
SSp-bfd
Tlx3-Cre_PL56
288171256
-2.46
4.35
0.90
0
Primary somatosensory area, barrel
field
SSp-bfd
Trib2-2ACreERT2
266172624
-0.70
3.50
0.35,
0.75
30
Primary somatosensory area, barrel
field
SSp-bfd
Vip-IRES-Cre
180075597
-0.70
3.50
0.35,
0.75
30
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
page 82 of 117
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Allen Mouse Brain Connectivity Atlas
TECHNICAL WHITE PAPER
Primary somatosensory area, lower limb
SSp-ll
A930038C07RikTg1-Cre
166323186
-1.06
2.25
0.35,
0.75
0
Primary somatosensory area, lower limb
SSp-ll
A930038C07RikTg1-Cre
166461193
-0.34
1.65
0.45
0
Primary somatosensory area, lower limb
SSp-ll
A930038C07RikTg1-Cre
264629246
-1.34
2.25
0.35,
0.75
25
Primary somatosensory area, lower limb
SSp-ll
A930038C07RikTg1-Cre
281459203
-1.34
1.50
0.35,
0.75
0
Primary somatosensory area, lower limb
SSp-ll
C57BL/6J
112229814
-0.58
2.25
0.35,
0.75
20
Primary somatosensory area, lower limb
SSp-ll
C57BL/6J
114292355
-0.82
1.40
0.45
0
Primary somatosensory area, lower limb
SSp-ll
C57BL/6J
126852363
-1.58
1.50
0.35,
0.75
0
Primary somatosensory area, lower limb
SSp-ll
C57BL/6J
148964212
-0.30
2.00
4.85
0
Primary somatosensory area, lower limb
SSp-ll
C57BL/6J
180718587
-0.58
1.90
0.70
0
Primary somatosensory area, lower limb
SSp-ll
Chrna2Cre_OE25
292124765
-1.34
1.50
0.35,
0.75
0
Primary somatosensory area, lower limb
SSp-ll
Chrna2Cre_OE25
292173552
-0.34
2.10
0.45
0
Primary somatosensory area, lower limb
SSp-ll
Cux2-IRES-Cre
266644610
-0.34
1.85
0.45
0
Primary somatosensory area, lower limb
SSp-ll
Cux2-IRES-Cre
286300594
0.38
2.50
0.40
15
Primary somatosensory area, lower limb
SSp-ll
Efr3aCre_NO108
278257366
-0.34
2.10
0.45
0
Primary somatosensory area, lower limb
SSp-ll
Gpr26Cre_KO250
267658747
-1.34
2.25
0.35,
0.75
25
Primary somatosensory area, lower limb
SSp-ll
Htr2aCre_KM207
277957908
0.62
1.50
0.35,
0.70
0
Primary somatosensory area, lower limb
SSp-ll
Nr5a1-Cre
166566678
-1.06
2.25
0.35,
0.75
25
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
page 83 of 117
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Allen Mouse Brain Connectivity Atlas
TECHNICAL WHITE PAPER
Primary somatosensory area, lower limb
SSp-ll
Ntsr1Cre_GN220
266964788
-0.34
1.90
0.45
0
Primary somatosensory area, lower limb
SSp-ll
Rasgrf2-2A-dCre
303713313
-1.34
1.50
0.35,
0.75
0
Primary somatosensory area, lower limb
SSp-ll
Rbp4-Cre_KL100
272698650
-0.34
2.00
0.45
0
Primary somatosensory area, lower limb
SSp-ll
Rorb-IRES2-Cre
287880102
-1.34
1.50
0.35,
0.75
0
Primary somatosensory area, lower limb
SSp-ll
Rorb-IRES2-Cre
293700454
-0.34
2.10
0.45
0
Primary somatosensory area, lower limb
SSp-ll
Scnn1a-Tg3-Cre
166326029
-1.06
2.25
0.35,
0.75
25
Primary somatosensory area, lower limb
SSp-ll
Scnn1a-Tg3-Cre
179640955
-0.34
1.65
0.45
0
Primary somatosensory area, lower limb
SSp-ll
Sim1-Cre_KJ18
297714071
-0.34
2.10
0.45
0
Primary somatosensory area, lower limb
SSp-ll
Slc18a2Cre_OZ14
266643194
-0.34
1.85
0.45
0
Primary somatosensory area, lower limb
SSp-ll
Syt6-Cre_KI148
156786234
-0.34
1.65
0.45
0
Primary somatosensory area, lower limb
SSp-ll
Tlx3-Cre_PL56
296052839
-0.34
2.10
0.45
0
Primary somatosensory area, lower limb
SSp-ll
Trib2-2ACreERT2
292620251
-1.34
1.50
0.35,
0.75
0
Primary somatosensory area, mouth
SSp-m
A930038C07RikTg1-Cre
298796577
0.26
3.50
0.35,
0.75
30
Primary somatosensory area, mouth
SSp-m
C57BL/6J
112936582
0.74
3.25
0.35,
0.75
0
Primary somatosensory area, mouth
SSp-m
C57BL/6J
114290938
0.74
3.70
0.40,
0.80
60
Primary somatosensory area, mouth
SSp-m
C57BL/6J
157654817
1.10
3.30
1.15
0
Primary somatosensory area, mouth
SSp-m
Cux2-IRES-Cre
278317945
0.26
3.50
0.35
30
Primary somatosensory area, mouth
SSp-m
Cux2-IRES-Cre
294397199
1.10
3.25, 3.00
1.90,
2.35
0
Primary somatosensory area, mouth
SSp-m
Nr5a1-Cre
177782493
0.26
3.50
0.35,
0.75
30
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
page 84 of 117
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TECHNICAL WHITE PAPER
Primary somatosensory area, mouth
SSp-m
Rorb-IRES2-Cre
301581763
0.26
3.50
0.35,
0.75
30
Primary somatosensory area, mouth
SSp-m
Scnn1a-Tg3-Cre
277852088
1.10
3.25, 3.00
1.90,
2.35
0
Primary somatosensory area, trunk
SSp-tr
C57BL/6J
100141495
-1.06
1.50
0.45
0
Primary somatosensory area, trunk
SSp-tr
C57BL/6J
100142655
-1.82
3.00
0.35,
0.75
30
Primary somatosensory area, trunk
SSp-tr
C57BL/6J
112791318
-1.06
2.25
0.35,
0.75
25
Primary somatosensory area, trunk
SSp-tr
C57BL/6J
126907302
-2.46
3.28
0.21,
0.65
30
Primary somatosensory area, trunk
SSp-tr
Chrna2Cre_OE25
278175580
-2.54
1.75
0.20,
0.55
0
Primary somatosensory area, trunk
SSp-tr
Cux2-IRES-Cre
178284661
-1.06
2.25
0.35
25
Primary somatosensory area, trunk
SSp-tr
Cux2-IRES-Cre
294435580
-1.82
3.00
0.35,
0.75
30
Primary somatosensory area, trunk
SSp-tr
Cux2-IRES-Cre
298830161
-1.34
2.25
0.35,
0.75
25
Primary somatosensory area, trunk
SSp-tr
Efr3aCre_NO108
277907462
-1.34
2.25
0.35,
0.75
25
Primary somatosensory area, trunk
SSp-tr
Gpr26Cre_KO250
298404154
-1.34
1.50
0.35,
0.75
0
Primary somatosensory area, trunk
SSp-tr
Nr5a1-Cre
115956702
-1.82
3.00
0.35,
0.75
30
Primary somatosensory area, trunk
SSp-tr
Ntsr1Cre_GN220
157768393
-1.06
2.25
0.35,
0.75
25
Primary somatosensory area, trunk
SSp-tr
Ntsr1Cre_GN220
166533924
-2.46
3.28
0.21,
0.65
30
Primary somatosensory area, trunk
SSp-tr
Ntsr1Cre_GN220
304641170
-1.34
1.50
0.35,
0.75
0
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
page 85 of 117
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Allen Mouse Brain Connectivity Atlas
TECHNICAL WHITE PAPER
Primary somatosensory area, trunk
SSp-tr
Rbp4-Cre_KL100
183171679
-1.82
3.00
0.35,
0.75
30
Primary somatosensory area, trunk
SSp-tr
Rbp4-Cre_KL100
297652799
-1.06
2.25
0.35
25
Primary somatosensory area, trunk
SSp-tr
Scnn1a-Tg3-Cre
166459070
-1.82
3.00
0.35,
0.75
30
Primary somatosensory area, trunk
SSp-tr
Sim1-Cre_KJ18
299784429
-1.34
1.50
0.35,
0.75
0
Primary somatosensory area, trunk
SSp-tr
Slc18a2Cre_OZ14
263553163
-1.34
2.25
0.35,
0.75
25
Primary somatosensory area, trunk
SSp-tr
Sst-IRES-Cre
304335875
-1.82
2.65
4.25
0
Primary somatosensory area, trunk
SSp-tr
Syt6-Cre_KI148
177319236
-1.06
2.25
0.35,
0.75
25
Primary somatosensory area, trunk
SSp-tr
Tlx3-Cre_PL56
297654263
-1.82
3.20
0.35,
0.75
30
Primary somatosensory area, trunk
SSp-tr
Tlx3-Cre_PL56
298182842
-1.34
1.50
0.35,
0.75
0
Primary somatosensory area,
unassigned
SSp-un
C57BL/6J
272697944
1.90
2.40
1.25
0
Primary somatosensory area,
unassigned
SSp-un
Scnn1a-Tg3-Cre
299447873
1.10
3.25, 3.0
1.90,
2.35
0
Primary somatosensory area, upper
limb
SSp-ul
A930038C07RikTg1-Cre
292792016
0.38
2.50
0.40,
0.75
15
Primary somatosensory area, upper
limb
SSp-ul
C57BL/6J
126909424
0.38
2.50
0.40,
0.75
15
Primary somatosensory area, upper
limb
SSp-ul
Chrna2Cre_OE25
298325807
0.38
2.50
0.40,
0.75
15
Primary somatosensory area, upper
limb
SSp-ul
Cux2-IRES-Cre
298106713
0.38
2.50
0.40
15
Primary somatosensory area, upper
limb
SSp-ul
Drd3-Cre_KI196
309428697
0.38
2.50
0.40
15
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
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Primary somatosensory area, upper
limb
SSp-ul
Efr3aCre_NO108
298352336
0.38
2.50
0.4,
0.75
15
Primary somatosensory area, upper
limb
SSp-ul
Etv1-CreERT2
167570021
-0.70
3.50
0.35,
0.75
30
Primary somatosensory area, upper
limb
SSp-ul
Nr5a1-Cre
177893658
0.35
2.50
0.40,
0.75
15
Primary somatosensory area, upper
limb
SSp-ul
Ntsr1Cre_GN220
159651060
0.62
1.50
0.35,
0.70
0
Primary somatosensory area, upper
limb
SSp-ul
Ntsr1Cre_GN220
162017460
0.38
2.50
0.40,
0.75
15
Primary somatosensory area, upper
limb
SSp-ul
Rbp4-Cre_KL100
266249483
-1.34
2.25
0.35,
0.75
25
Primary somatosensory area, upper
limb
SSp-ul
Rbp4-Cre_KL100
286312782
0.38
2.50
0.40,
0.75
15
Primary somatosensory area, upper
limb
SSp-ul
Scnn1a-Tg3-Cre
181860173
0.38
2.50
0.40,
0.75
15
Primary somatosensory area, upper
limb
SSp-ul
Sim1-Cre_KJ18
297951732
0.38
2.50
0.40,
0.75
15
Primary somatosensory area, upper
limb
SSp-ul
Slc18a2Cre_OZ14
306990880
0.38
2.50
0.4,
0.75
15
Primary somatosensory area, upper
limb
SSp-ul
Syt6-Cre_KI148
179641666
0.38
2.50
0.40,
0.75
15
Primary somatosensory area, upper
limb
SSp-ul
Tlx3-Cre_PL56
303614706
0.26
3.50
0.35,
0.75
30
Primary somatosensory area, upper
limb
SSp-ul
Tlx3-Cre_PL56
303615412
0.38
2.50
0.4,
0.75
15
Primary visual area
VISp
A930038C07RikTg1-Cre
158255941
-4.48
2.70
0.35
0
Primary visual area
VISp
A930038C07RikTg1-Cre
166324604
-3.80
2.50
0.35,
0.75
0
Primary visual area
VISp
A930038C07RikTg1-Cre
283020912
-3.28
2.50
0.25,
0.75
0
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
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Primary visual area
VISp
A930038C07RikTg1-Cre
292793967
-4.84
2.50
0.31
0
Primary visual area
VISp
A930038C07RikTg1-Cre
298351630
-3.28
2.50
0.25,
0.75
0
Primary visual area
VISp
C57BL/6J
100141219
-3.80
2.50
0.35,
0.75
0
Primary visual area
VISp
C57BL/6J
100147853
-4.48
2.70
0.35
0
Primary visual area
VISp
C57BL/6J
113887162
-3.28
2.50
0.25,
0.75
0
Primary visual area
VISp
C57BL/6J
113887868
-4.84
2.50
0.31
0
Primary visual area
VISp
C57BL/6J
126862385
-4.48
1.60
0.31
0
Primary visual area
VISp
C57BL/6J
127138787
-4.60
3.60
0.45
30
Primary visual area
VISp
C57BL/6J
174361040
-4.36
1.65
0.38
0
Primary visual area
VISp
C57BL/6J
180296424
-4.60
3.45
0.80
0
Primary visual area
VISp
C57BL/6J
272782668
-4.48
1.62
0.31
0
Primary visual area
VISp
C57BL/6J
277616630
-3.28
2.50
0.50
0
Primary visual area
VISp
C57BL/6J
277712166
-3.28
2.50
0.50
0
Primary visual area
VISp
C57BL/6J
277713580
-3.28
2.50
0.50
0
Primary visual area
VISp
Calb2-IRES-Cre
168515938
-4.48
2.70
0.35
0
Primary visual area
VISp
Chrna2Cre_OE25
278068196
-2.46
4.35
0.90
0
Primary visual area
VISp
Chrna2Cre_OE25
292126180
-3.80
2.50
0.35,
0.75
0
Primary visual area
VISp
Chrna2Cre_OE25
297597186
-3.28
2.50
0.25,
0.75
0
Primary visual area
VISp
Chrna2Cre_OE25
299781566
-4.84
2.50
0.31
0
Primary visual area
VISp
Cort-T2A-Cre
167375352
-4.48
2.70
0.35
0
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
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Primary visual area
VISp
Crh-IRES-Cre
(BL)
266836749
-4.48
2.70
0.35
0
Primary visual area
VISp
Cux2-IRES-Cre
183471884
-4.48
2.70
0.35
0
Primary visual area
VISp
Cux2-IRES-Cre
272821309
-3.28
2.50
0.25
0
Primary visual area
VISp
Cux2-IRES-Cre
286302294
-4.84
2.50
0.31
0
Primary visual area
VISp
Cux2-IRES-Cre
293472335
-3.28
2.50
0.25
0
Primary visual area
VISp
Cux2-IRES-Cre
298829455
-4.60
3.80
0.45
30
Primary visual area
VISp
Drd3-Cre_KI196
298759552
-4.84
2.50
0.75
0
Primary visual area
VISp
Efr3aCre_NO108
267704653
-4.48
2.70
0.35
0
Primary visual area
VISp
Efr3aCre_NO108
286835688
-3.40
3.60
0.45
0
Primary visual area
VISp
Efr3aCre_NO108
298350212
-3.80
2.50
0.35,
0.75
0
Primary visual area
VISp
Efr3aCre_NO108
294266031
-4.60
3.80
0.45
30
Primary visual area
VISp
Efr3aCre_NO108
309564818
-4.04
4.00
0.35
0
Primary visual area
VISp
Erbb4-2ACreERT2
182184486
-4.48
2.70
0.35
0
Primary visual area
VISp
Etv1-CreERT2
156494530
-4.48
2.70
0.35
0
Primary visual area
VISp
Gad2-IRES-Cre
167511639
-4.48
2.70
0.35
0
Primary visual area
VISp
Gng7-Cre_KH71
157955639
-2.46
4.25
0.81
0
Primary visual area
VISp
Gpr26Cre_KO250
181601101
-4.48
2.70
0.35
0
Primary visual area
VISp
Gpr26Cre_KO250
301263519
-3.28
2.50
0.25,
0.75
0
Primary visual area
VISp
Htr3aCre_NO152
305489377
-4.48
2.70
0.35
0
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
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TECHNICAL WHITE PAPER
Primary visual area
VISp
Nos1-CreERT2
267931685
-4.48
2.70
0.35
0
Primary visual area
VISp
Nos1-CreERT2
293116943
-4.48
2.70
0.35
0
Primary visual area
VISp
Nr5a1-Cre
176882966
-3.40
3.50
0.45
0
Primary visual area
VISp
Nr5a1-Cre
176901480
-3.28
2.50
0.25,
0.75
0
Primary visual area
VISp
Nr5a1-Cre
177781006
-3.80
2.00
0.35,
0.75
0
Primary visual area
VISp
Nr5a1-Cre
266100645
-4.84
2.50
0.31
0
Primary visual area
VISp
Nr5a1-Cre
266177248
-4.04
4.00
0.35,
0.75
30
Primary visual area
VISp
Ntsr1Cre_GN220
156545918
-4.48
2.70
0.35
0
Primary visual area
VISp
Ntsr1Cre_GN220
159550125
-3.28
2.50
0.25,
0.75
0
Primary visual area
VISp
Ntsr1Cre_GN220
181258571
-3.80
2.50
0.35,
0.75
0
Primary visual area
VISp
Ntsr1Cre_GN220
297629988
-4.60
3.80
0.45
30
Primary visual area
VISp
Plxnd1-Cre
299859225
-4.48
2.70
0.35
0
Primary visual area
VISp
Pvalb-IRES-Cre
166562678
-4.48
2.70
0.35
0
Primary visual area
VISp
Rasgrf2-2A-dCre
298758133
-4.48
2.70
0.35
0
Primary visual area
VISp
Rbp4-Cre_KL100
121510421
-4.48
2.70
0.35
0
Primary visual area
VISp
Rbp4-Cre_KL100
183173527
-3.28
2.50
0.25,
0.75
0
Primary visual area
VISp
Rbp4-Cre_KL100
266250195
-3.80
2.50
0.35,
0.75
0
Primary visual area
VISp
Rbp4-Cre_KL100
294482052
-3.80
2.50
0.35
0
Primary visual area
VISp
Rorb-IRES2-Cre
287224335
-4.48
2.70
0.35
0
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
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TECHNICAL WHITE PAPER
Primary visual area
VISp
Rorb-IRES2-Cre
300929973
-3.28
2.50
0.25,
0.75
0
Primary visual area
VISp
Rorb-IRES2-Cre
301616660
-4.48
2.70
0.35
0
Primary visual area
VISp
Rorb-IRES2-Cre
301617370
-4.60
3.80
0.45
30
Primary visual area
VISp
Scnn1a-Tg3-Cre
166269819
-4.48
2.70
0.35
0
Primary visual area
VISp
Scnn1a-Tg3-Cre
166326736
-3.80
2.50
0.35,
0.75
0
Primary visual area
VISp
Scnn1a-Tg3-Cre
182089608
-3.28
2.50
0.25,
0.75
0
Primary visual area
VISp
Sst-IRES-Cre
288261928
-4.48
2.70
0.35
0
Primary visual area
VISp
Syt6-Cre_KI148
125435783
-4.48
2.70
0.35
0
Primary visual area
VISp
Syt6-Cre_KI148
156784823
-3.80
2.50
0.35,
0.75
0
Primary visual area
VISp
Syt6-Cre_KI148
159330030
-3.28
2.50
0.25,
0.75
0
Primary visual area
VISp
Syt6-Cre_KI148
168097187
-4.48
1.60
0.31
0
Primary visual area
VISp
Syt6-Cre_KI148
297671724
-4.84
2.50
0.75
0
Primary visual area
VISp
Syt6-Cre_KI148
299828473
-4.60
3.80
0.45
30
Primary visual area
VISp
Tlx3-Cre_PL56
288171964
-4.48
2.70
0.35
0
Primary visual area
VISp
Tlx3-Cre_PL56
296052133
-3.80
2.50
0.35,
0.75
0
Primary visual area
VISp
Tlx3-Cre_PL56
297592527
-3.28
2.50
0.25,
0.75
0
Primary visual area
VISp
Tlx3-Cre_PL56
297593235
-4.84
2.50
0.31
0
Primary visual area
VISp
Tlx3-Cre_PL56
297593942
-4.60
3.80
0.45
30
Primary visual area
VISp
Trib2-2ACreERT2
268320515
-4.48
2.70
0.35
0
Primary visual area
VISp
Trib2-2ACreERT2
308879859
-3.80
2.50
0.35,
0.75
0
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
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Primary visual area
VISp
Vip-IRES-Cre
182293273
-4.48
2.70
0.35
0
Primary visual area, layer 4
VISp4
Nr5a1-Cre
157767683
-4.48
2.70
0.35
0
Principal sensory nucleus of the
trigeminal
PSV
C57BL/6J
114755811
-5.20
1.95
3.35
0
Principal sensory nucleus of the
trigeminal
PSV
C57BL/6J
156979988
-4.04
2.25
4.65
0
Principal sensory nucleus of the
trigeminal
PSV
Gad2-IRES-Cre
303535867
-4.36
1.60
4.27
0
Principal sensory nucleus of the
trigeminal
PSV
Syt6-Cre_KI148
182465608
-4.36
1.60
4.27
0
Pyramus (VIII)
PYR
C57BL/6J
125831616
-7.32
0.50
1.63
0
Red nucleus
RN
C57BL/6J
113400134
-3.28
0.36
4.13
0
Red nucleus
RN
C57BL/6J
120811946
-3.08
1.25
4.15
0
Red Nucleus
RN
Rbp4-Cre_KL100
300624130
-3.28
0.60
3.65
0
Reticular nucleus of the thalamus
RT
C57BL/6J
117316260
-0.34
1.70
3.58
0
Reticular nucleus of the thalamus
RT
C57BL/6J
127468854
-0.70
1.80
3.95
0
Reticular nucleus of the thalamus
RT
Gad2-IRES-Cre
156252954
-0.70
1.53
3.48
0
Reticular nucleus of the thalamus
RT
Gad2-IRES-Cre
156254369
-1.22
2.00
3.09
0
Reticular nucleus of the thalamus
RT
Oxtr-Cre_ON66
301421253
-2.30
2.55
3.00
0
Reticular nucleus of the thalamus
RT
Pvalb-IRES-Cre
127085005
-0.70
1.53
3.48
0
Reticular nucleus of the thalamus
RT
Pvalb-IRES-Cre
127090378
-1.22
2.00
3.09
0
Reticular nucleus of the thalamus
RT
Pvalb-IRES-Cre
277958616
-0.70
1.80
3.95
0
Reticular nucleus of the thalamus
RT
Pvalb-IRES-Cre
299894738
-0.34
1.70
3.58
0
Reticular nucleus of the thalamus
RT
Slc32a1-IRESCre
171064488
-0.70
1.53
3.48
0
Reticular nucleus of the thalamus
RT
Slc32a1-IRESCre
171065200
-1.22
2.00
3.09
0
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
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Allen Mouse Brain Connectivity Atlas
TECHNICAL WHITE PAPER
Retrochiasmatic area
RCH
Lypd6Cre_KL156
305092904
-0.34
0.20
5.60
0
Retrosplenial area
RSP
A930038C07RikTg1-Cre
166271142
-2.06
0.17
0.63
0
Retrosplenial area
RSP
C57BL/6J
100148142
-2.06
0.17
0.63
0
Retrosplenial area
RSP
Chrna2Cre_OE25
298275548
-3.28
1.06
1.17
0
Retrosplenial area
RSP
Cux2-IRES-Cre
272735744
-3.00
0.45
0.40
0
Retrosplenial area
RSP
Etv1-CreERT2
159097209
-2.06
0.17
0.63
0
Retrosplenial area
RSP
Scnn1a-Tg3-Cre
166269090
-2.06
0.17
0.63
0
Retrosplenial area, dorsal part
RSPd
A930038C07RikTg1-Cre
166325321
-3.00
0.45
0.40
0
Retrosplenial area, dorsal part
RSPd
Adcyap1-2A-Cre
306491185
-1.70
0.42
2.45
0
Retrosplenial area, dorsal part
RSPd
C57BL/6J
112424813
-3.00
0.45
0.40
0
Retrosplenial area, dorsal part
RSPd
Chrnb4Cre_OL57
298000880
-1.70
0.42
2.45
0
Retrosplenial area, dorsal part
RSPd
Efr3aCre_NO108
267661018
-2.06
0.17
0.63
0
Retrosplenial area, dorsal part
RSPd
Efr3aCre_NO108
278179794
-3.80
2.50
0.35,
0.75
0
Retrosplenial area, dorsal part
RSPd
Gpr26Cre_KO250
267658040
-2.06
0.17
0.63
0
Retrosplenial area, dorsal part
RSPd
Gpr26Cre_KO250
298404860
-3.80
2.50
0.35,
0.75
0
Retrosplenial area, dorsal part
RSPd
Gpr26Cre_KO250
298720191
-3.00
0.45
0.40
0
Retrosplenial area, dorsal part
RSPd
Rbp4-Cre_KL100
166054929
-3.00
0.45
0.40
0
Retrosplenial area, dorsal part
RSPd
Scnn1a-Tg3-Cre
166458363
-3.00
0.45
0.40
0
Retrosplenial area, dorsal part
RSPd
Sst-IRES-Cre
288264753
-2.06
0.17
0.63
0
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
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TECHNICAL WHITE PAPER
Retrosplenial area, lateral agranular part
RSPagl
C57BL/6J
272916915
-3.16
1.20
0.55
0
Retrosplenial area, lateral agranular part
RSPagl
Chrna2Cre_OE25
297627858
-4.48
1.60
0.31
0
Retrosplenial area, lateral agranular part
RSPagl
Cux2-IRES-Cre
294484177
-4.48
1.60
0.31
0
Retrosplenial area, lateral agranular part
RSPagl
Efr3aCre_NO108
288168426
-4.48
1.60
0.31
0
Retrosplenial area, ventral part
RSPv
A930038C07RikTg1-Cre
292373346
-3.28
1.06
1.17
0
Retrosplenial area, ventral part
RSPv
C57BL/6J
100140949
-2.06
0.17
0.63
0
Retrosplenial area, ventral part
RSPv
C57BL/6J
100142354
-4.04
2.00
1.50
0
Retrosplenial area, ventral part
RSPv
C57BL/6J
112516334
-2.06
0.17
0.60
0
Retrosplenial area, ventral part
RSPv
C57BL/6J
112595376
-3.28
1.06
1.17
0
Retrosplenial area, ventral part
RSPv
Chrna2Cre_OE25
292124058
-2.06
0.17
0.63
0
Retrosplenial area, ventral part
RSPv
Chrna2Cre_OE25
292172100
-3.00
0.45
0.40
0
Retrosplenial area, ventral part
RSPv
Cux2-IRES-Cre
177907082
-2.06
0.17
0.63
0
Retrosplenial area, ventral part
RSPv
Cux2-IRES-Cre
182467736
-3.00
0.45
0.40
0
Retrosplenial area, ventral part
RSPv
Cux2-IRES-Cre
184168193
-2.06
0.17
0.63
0
Retrosplenial area, ventral part
RSPv
Drd3-Cre_KI196
304693450
-4.04
2.00
1.50
0
Retrosplenial area, ventral part
RSPv
Nos1-CreERT2
308027576
-2.06
0.17
0.63
0
Retrosplenial area, ventral part
RSPv
Rbp4-Cre_KL100
159832064
-2.06
0.17
0.63
0
Retrosplenial area, ventral part
RSPv
Rbp4-Cre_KL100
249396394
-3.28
1.06
1.17
0
Retrosplenial area, ventral part
RSPv
Rbp4-Cre_KL100
303784745
-3.28
1.06
1.17
0
Retrosplenial area, ventral part
RSPv
Scnn1a-Tg3-Cre
181860879
-3.28
1.06
1.17
0
Retrosplenial area, ventral part
RSPv
Syt6-Cre_KI148
157711043
-3.00
0.45
0.40
0
Retrosplenial area, ventral part
RSPv
Syt6-Cre_KI148
168363168
-3.28
1.06
1.17
0
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
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Retrosplenial area, ventral part
RSPv
Syt6-Cre_KI148
176497015
-2.06
0.17
0.63
0
Retrosplenial area, ventral part
RSPv
Trib2-2ACreERT2
287601100
-2.06
0.17
0.63
0
Retrosplenial area, ventral part
RSPv
Trib2-2ACreERT2
308721884
-2.06
0.17
0.63
0
Secondary motor area
MOs
A930038C07RikTg1-Cre
166460484
2.10
0.75
0.35,
0.75
0
Secondary motor area
MOs
A930038C07RikTg1-Cre
176433237
0.14
0.90
0.40,
0.80
0
Secondary motor area
MOs
A930038C07RikTg1-Cre
292476595
3.70
1.50
0.40
0
Secondary motor area
MOs
C57BL/6J
100140756
3.08
1.50
0.40
0
Secondary motor area
MOs
C57BL/6J
100141454
2.10
0.75
0.35,
0.75
0
Secondary motor area
MOs
C57BL/6J
112952510
1.70
0.90
0.40,
0.80
0
Secondary motor area
MOs
C57BL/6J
141603190
1.00
0.75
0.30,
0.75
0
Secondary motor area
MOs
C57BL/6J
157710335
3.08
1.50
0.40
0
Secondary motor area
MOs
C57BL/6J
180916954
0.14
0.60
0.60
0
Secondary motor area
MOs
Chrna2Cre_OE25
292172846
2.10
0.75
0.35,
0.75
0
Secondary motor area
MOs
Chrna2Cre_OE25
292174974
0.14
0.90
0.40,
0.80
0
Secondary motor area
MOs
Chrna2Cre_OE25
292210312
2.10
2.25
0.35,
1.00
30
Secondary motor area
MOs
Chrnb4Cre_OL57
298000163
1.00
0.75
0.30,
0.75
0
Secondary motor area
MOs
Crh-IRES-Cre
(BL)
183172820
0.26
0.27
0.60
0
MARCH 2016 v.9
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Secondary motor area
MOs
Cux2-IRES-Cre
182461051
2.10
0.75
0.35
0
Secondary motor area
MOs
Cux2-IRES-Cre
272822110
1.00
0.75
0.30
0
Secondary motor area
MOs
Cux2-IRES-Cre
286299886
3.70
1.50
0.40
0
Secondary motor area
MOs
Efr3aCre_NO108
267659565
1.34
1.50
0.35,
0.75
0
Secondary motor area
MOs
Efr3aCre_NO108
278181912
2.10
0.75
0.35,
0.75
0
Secondary motor area
MOs
Efr3aCre_NO108
278258073
0.14
0.90
0.40,
0.80
0
Secondary motor area
MOs
Efr3aCre_NO108
287995889
1.00
0.75
0.30,
0.75
0
Secondary motor area
MOs
Etv1-CreERT2
156492394
1.34
1.50
0.35,
0.75
0
Secondary motor area
MOs
Glt25d2Cre_NF107
313327735
2.80
1.25
1.30
0
Secondary motor area
MOs
Gpr26Cre_KO250
258316155
0.26
0.27
0.60
0
Secondary motor area
MOs
Gpr26Cre_KO250
298601161
2.10
0.80
0.35,
0.75
0
Secondary motor area
MOs
Grm2-Cre_MR90
182795499
3.08
1.50
0.40
0
Secondary motor area
MOs
Grm2-Cre_MR90
182814071
2.10
0.75
0.35,
0.75
0
Secondary motor area
MOs
Grm2-Cre_MR90
300235349
3.10
1.50
0.40
0
Secondary motor area
MOs
Grp-Cre_KH288
265292679
0.14
0.90
0.40,
0.80
0
Secondary motor area
MOs
Grp-Cre_KH288
266503540
1.00
0.75
0.30,
0.75
0
Secondary motor area
MOs
Grp-Cre_KH288
292034715
2.95
1.50
0.40
0
Secondary motor area
MOs
Htr2aCre_KM207
277957202
1.00
0.75
0.30,
0.75
0
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
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Secondary motor area
MOs
Htr2aCre_KM207
293433996
3.70
1.50
0.40
0
Secondary motor area
MOs
Nos1-CreERT2
267813224
1.34
1.50
0.35,
0.75
0
Secondary motor area
MOs
Nos1-CreERT2
267930978
0.26
0.27
0.60
0
Secondary motor area
MOs
Nr5a1-Cre
167791990
2.10
0.75
0.35,
0.75
0
Secondary motor area
MOs
Ntsr1Cre_GN220
158139883
0.14
0.90
0.40,
0.80
0
Secondary motor area
MOs
Ntsr1Cre_GN220
159373612
0.14
0.90
0.40,
0.80
0
Secondary motor area
MOs
Ntsr1Cre_GN220
159551564
-0.34
4.00, 3.75
3.00,
3.25
0
Secondary motor area
MOs
Rasgrf2-2A-dCre
298758841
0.26
0.27
0.60
0
Secondary motor area
MOs
Rbp4-Cre_KL100
166055636
2.10
0.75
0.35,
0.75
0
Secondary motor area
MOs
Rbp4-Cre_KL100
168162771
1.00
0.75
0.30,
0.75
0
Secondary motor area
MOs
Rbp4-Cre_KL100
182793477
0.14
0.90
0.40,
0.80
0
Secondary motor area
MOs
Rbp4-Cre_KL100
263242463
3.08
1.50
0.40
0
Secondary motor area
MOs
Sim1-Cre_KJ18
293827470
2.10
0.80
0.35,
0.75
0
Secondary motor area
MOs
Sim1-Cre_KJ18
297854981
0.14
0.90
0.40,
0.80
0
Secondary motor area
MOs
Sim1-Cre_KJ18
297947641
1.00
0.75
0.30,
0.75
0
Secondary motor area
MOs
Syt6-Cre_KI148
159330754
1.00
0.75
0.30,
0.75
0
Secondary motor area
MOs
Syt6-Cre_KI148
177319974
0.14
0.90
0.40,
0.80
0
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
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Secondary motor area
MOs
Syt6-Cre_KI148
177459319
2.10
0.75
0.35,
0.75
0
Secondary motor area
MOs
Syt6-Cre_KI148
177890246
3.08
1.50
0.40
0
Secondary motor area
MOs
Syt6-Cre_KI148
287633753
2.10
2.25
0.35,
1.00
30
Secondary motor area
MOs
Tlx3-Cre_PL56
293431869
0.26
0.27
0.60
0
Secondary motor area
MOs
Tlx3-Cre_PL56
293432575
0.26
0.25
1.25
0
Secondary motor area
MOs
Tlx3-Cre_PL56
294525944
0.14
0.90
0.40,
0.80
0
Secondary motor area
MOs
Tlx3-Cre_PL56
294532700
2.10
0.80
0.35,
0.75
0
Secondary motor area
MOs
Tlx3-Cre_PL56
297892130
1.00
0.75
0.30,
0.75
0
Secondary motor area
MOs
Vip-IRES-Cre
182935487
0.26
0.27
0.80
0
Septofimbrial nucleus
SF
Calb2-IRES-Cre
287950390
-0.10
0.10
2.30
0
Septofimbrial nucleus
SF
Syt6-Cre_KI148
182341627
0.02
0.40
3.08
0
Simple lobule
SIM
C57BL/6J
112460257
-5.88
2.25
2.19
0
Simple lobule
SIM
C57BL/6J
113936696
-5.68
2.25
0.42,
1.05
0
Simple lobule
SIM
Gabra6-IRESCre
159945113
-6.48
2.50
0.57
0
Simple lobule
SIM
Gad2-IRES-Cre
287539649
-5.88
2.25
2.19
0
Simple lobule
SIM
Gad2-IRES-Cre
302079862
-4.60
2.40
2.55
0
Simple lobule
SIM
Nos1-CreERT2
300622004
-5.68
2.25
0.42,
1.05
0
Simple lobule
SIM
Pcp2Cre_GN135
168299316
-5.68
2.25
0.42,
1.05
0
Simple lobule
SIM
Ppp1r17Cre_NL146
267811103
-6.48
2.50
0.57
0
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
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Simple lobule
SIM
Ppp1r17Cre_NL146
268165349
-5.68
2.25
0.42,
1.05
0
Simple lobule
SIM
Slc17a7-IRES2Cre
267106046
-5.68
2.25
0.42,
1.05
0
Spinal nucleus of the trigeminal, caudal
part
SPVC
C57BL/6J
114402050
0.20
calamus
(-7.00
bregma)
1.25
0.15
0
Spinal nucleus of the trigeminal, caudal
part
SPVC
C57BL/6J
122640358
-0.32
calamus
(-7.64
bregma)
0.80
0.28
0
Spinal nucleus of the trigeminal, caudal
part
SPVC
C57BL/6J
126352744
-6.96
1.80
3.40
0
Spinal nucleus of the trigeminal, caudal
part
SPVC
C57BL/6J
146856593
0.30
calamus
(-6.90
bregma)
1.20
0.15
0
Spinal nucleus of the trigeminal, caudal
part
SPVC
C57BL/6J
147215105
-0.44
calamus
(-7.76
bregma)
1.75
0.61
0
Spinal nucleus of the trigeminal, caudal
part
SPVC
C57BL/6J
147790181
0.00
calamus
(-7.32
bregma)
1.00
1.36
0
Spinal nucleus of the trigeminal, caudal
part
SPVC
Cck-IRES-Cre
287460307
-0.44
calamus
(-7.76
Bregma)
1.75
0.61
0
Spinal nucleus of the trigeminal, caudal
part
SPVC
Slc32a1-IRESCre
305319461
-0.44
calamus
(-7.76
Bregma)
1.75
0.61
0
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
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Spinal nucleus of the trigeminal, caudal
part
SPVC
Slc6a5Cre_KF109
126908712
-7.56
1.25
3.06
0
Spinal nucleus of the trigeminal, caudal
part
SPVC
Syt6-Cre_KI148
264096244
-0.44
calamus
(-7.76
bregma)
1.75
0.61
0
Spinal nucleus of the trigeminal, caudal
part
SPVC
Th-Cre
311846681
-0.44
1.75
0.61
0
Spinal nucleus of the trigeminal,
interpolar part
SPVI
C57BL/6J
272738620
-6.84
1.80
3.40
0
Spinal nucleus of the trigeminal,
interpolar part
SPVI
Slc6a5Cre_KF109
160150861
-6.00
1.83
3.95
0
Spinal nucleus of the trigeminal,
interpolar part
SPVI
Slc6a5Cre_KF109
160151570
-6.96
1.80
3.40
0
Spinal nucleus of the trigeminal, oral
part
SPVO
C57BL/6J
112826458
-6.00
1.83
3.95
0
Spinal vestibular nucleus
SPIV
C57BL/6J
126351299
-6.00
1.40
3.20
0
Spinal vestibular nucleus
SPIV
C57BL/6J
128056535
-6.48
1.25
3.25
0
Spinal vestibular nucleus
SPIV
C57BL/6J
129567943
-5.68
1.13
3.00
0
Striatum dorsal region
CP
Chat-IRES-Cre
307692311
-1.34
2.80
1.84
0
Striatum dorsal region
CP
Chat-IRES-Cre
307909888
-0.70
2.70
2.39
0
Striatum dorsal region
CP
Chat-IRES-Cre
307910595
0.14
1.75
2.53
0
Striatum dorsal region
CP
Efr3aCre_NO108
301180385
-1.34
2.80
1.84
0
Striatum dorsal region
CP
Gad2-IRES-Cre
303478748
-1.06
3.00
3.90
0
Striatum dorsal region
CP
Ntrk1-IRES-Cre
308395312
0.14
1.75
2.53
0
Striatum dorsal region
CP
Slc18a2Cre_OZ14
301620241
0.14
1.75
2.53
0
Subiculum
SUB
C57BL/6J
114008926
-3.52
2.50
1.35
0
MARCH 2016 v.9
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Subiculum, dorsal part
SUBd
C57BL/6J
127795906
-3.52
2.50
1.35
0
Subiculum, dorsal part
SUBd
C57BL/6J
157063781
-2.55
0.13
5.30
0
Subiculum, dorsal part
SUBd
Drd1a-Cre
113368898
-2.85
0.70
1.85
0
Subiculum, dorsal part
SUBd
Slc17a6-IRESCre
159374329
-4.04
2.00
1.50
0
Subiculum, dorsal part
SUBd
Slc32a1-IRESCre
264077561
-2.70
0.56
1.92
0
Subiculum, dorsal part
SUBd
Syt17-Cre_NO14
293009970
-2.92
1.85
1.95
0
Subiculum, ventral part
SUBv
A930038C07RikTg1-Cre
298831574
-4.72
3.40
2.2,
2.6
0
Subiculum, ventral part
SUBv
C57BL/6J
122641784
-2.54
4.25
3.32
25
Subiculum, ventral part
SUBv
C57BL/6J
127222723
-4.04
3.35
2.60
0
Subiculum, ventral part
SUBv
C57BL/6J
152994878
-4.04
3.50
2.60
0
Subiculum, ventral part
SUBv
Cux2-IRES-Cre
298795868
-4.72
3.40
2.20
0
Subiculum, ventral part
SUBv
Drd3-Cre_KI196
293701770
-4.16
3.80
3.00
0
Subiculum, ventral part
SUBv
Gad2-IRES-Cre
167513067
-2.70
0.56
1.92
0
Subiculum, ventral part
SUBv
Grik4-Cre
264945172
-4.00
3.40
2.60
0
Subiculum, ventral part
SUBv
Rbp4-Cre_KL100
299446445
-4.72
3.40
2.2,
2.6
0
Subiculum, ventral part
SUBv
Scnn1a-Tg3-Cre
268041088
-4.04
3.80
1.90
0
Subiculum, ventral part
SUBv
Syt17-Cre_NO14
286610216
-3.08
3.00
3.60
0
Subiculum, ventral part
SUBv
Tac1-IRES2-Cre
294314037
-4.72
3.40
2.20,
2.60
0
Sublaterodorsal nucleus
SLD
Crh-IRES-Cre
(BL)
277853501
-5.52
0.88
2.71
0
Sublaterodorsal nucleus
SLD
Crh-IRES-Cre
(BL)
278180500
-4.22
0.25
4.40
0
Submedial nucleus of the thalamus
SMT
Vipr2-Cre_KE2
268163228
-1.34
0.32
4.05
0
MARCH 2016 v.9
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Subparafascicular area
SPA
Calb2-IRES-Cre
184158996
-2.18
1.23
3.71
20
Subparafascicular nucleus,
magnocellular part
SPFm
C57BL/6J
273025872
-1.22
0.30
4.15
0
Subparafascicular nucleus,
magnocellular part
SPFm
Pdzk1ip1Cre_KD31
159258618
-2.30
0.25
3.90
0
Subparafascicular nucleus,
magnocellular part
SPFm
Ppp1r17Cre_NL146
292480129
-2.06
0.25
4.15
0
Subparafascicular nucleus, parvicellular
part
SPFp
C57BL/6J
127396051
-2.92
1.75
3.45
0
Subparafascicular nucleus, parvicellular
part
SPFp
C57BL/6J
174583187
-3.28
2.00
3.20
0
Subparafascicular nucleus, parvicellular
part
SPFp
Calb2-IRES-Cre
287880821
-2.92
1.75
3.45
0
Subparafascicular nucleus, parvicellular
part
SPFp
Calb2-IRES-Cre
301063301
-2.92
1.75
3.45
0
Subparafascicular nucleus, parvicellular
part
SPFp
Th-Cre_FI172
266501422
-2.92
1.75
3.45
0
Subparaventricular zone
SBPV
Oxtr-Cre_ON66
299408890
-0.58
0.20
4.75
0
Substantia innominata
SI
C57BL/6J
125436508
1.10
1.50
5.15
0
Substantia innominata
SI
C57BL/6J
273026584
0.62
1.20
4.90
0
Substantia innominata
SI
Chat-IRES-Cre
126711445
-0.58
1.75
4.50
0
Substantia innominata
SI
Chat-IRES-Cre
126841788
0.02
1.60
4.55
0
Substantia innominata
SI
Chrna2Cre_OE25
304762245
1.10
1.50
5.15
0
Substantia innominata
SI
Chrna2Cre_OE25
304970618
-0.94
2.25
4.47
0
Substantia innominata
SI
Crh-IRES-Cre
(BL)
278179088
-0.94
2.25
4.47
0
Substantia innominata
SI
Drd3-Cre_KI196
300111087
-1.82
2.65
4.25
0
Substantia innominata
SI
Drd3-Cre_KI196
305026861
0.62
1.20
4.85
0
MARCH 2016 v.9
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Substantia innominata
SI
Efr3aCre_NO108
298835152
0.14
2.07
4.76
0
Substantia innominata
SI
Ntrk1-IRES-Cre
299404532
-0.58
1.75
4.50
0
Substantia innominata
SI
Slc17a6-IRESCre
302739608
0.62
1.20
4.85
0
Substantia nigra, compact part
SNc
Calb2-IRES-Cre
301062306
-1.70
1.40
4.85
0
Substantia nigra, compact part
SNc
Gad2-IRES-Cre
303534443
-3.28
1.50
4.30
0
Substantia nigra, compact part
SNc
Slc18a2Cre_OZ14
292958638
-3.08
1.25
4.15
0
Substantia nigra, compact part
SNc
Slc6a3-Cre
160539283
-3.08
1.25
4.08
0
Substantia nigra, reticular part
SNr
C57BL/6J
100141993
-3.28
1.50
4.30
0
Substantia nigra, reticular part
SNr
C57BL/6J
158914182
-3.08
1.25
4.30
0
Substantia nigra, reticular part
SNr
C57BL/6J
175263063
-3.40
1.60
4.60
0
Substantia nigra, reticular part
SNr
Pvalb-IRES-Cre
299895444
-3.28
1.50
4.30
0
Subthalamic nucleus
STN
A930038C07RikTg1-Cre
264697714
-1.70
1.40
4.85
0
Subthalamic nucleus
STN
C57BL/6J
146986331
-1.34
1.75
4.50
0
Subthalamic nucleus
STN
C57BL/6J
174788109
-1.82
2.05
4.25
0
Superior central nucleus raphe
CS
C57BL/6J
156929391
-4.36
0.30
4.50
0
Superior central nucleus raphe
CS
Slc18a2Cre_OZ14
300689439
-4.84
0.22
3.85
0
Superior colliculus, motor related
SCm
C57BL/6J
126523066
-4.48
0.50
1.85
0
Superior colliculus, motor related
SCm
C57BL/6J
126646502
-3.80
0.30
1.20
0
Superior colliculus, motor related
SCm
C57BL/6J
128001349
-4.36
1.25
1.20
0
Superior colliculus, motor related
SCm
C57BL/6J
146078721
-3.80
1.50
1.77
0
Superior colliculus, motor related
SCm
C57BL/6J
175158132
-3.80
1.50
2.10
0
Superior colliculus, motor related
SCm
Gad2-IRES-Cre
266646036
-2.92
1.25
2.76
0
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
page 103 of 117
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Allen Mouse Brain Connectivity Atlas
TECHNICAL WHITE PAPER
Superior colliculus, motor related
SCm
Nos1-CreERT2
305025440
-4.36
0.50
1.00
0
Superior colliculus, motor related
SCm
Pdzk1ip1Cre_KD31
167118084
-2.92
1.25
2.76
0
Superior colliculus, motor related
SCm
Pdzk1ip1Cre_KD31
182029881
-2.70
0.56
1.92
0
Superior colliculus, motor related
SCm
Pdzk1ip1Cre_KD31
183376269
-2.70
0.56
1.92
0
Superior colliculus, motor related
SCm
Ppp1r17Cre_NL146
278513131
-4.36
0.30
0.94
0
Superior colliculus, motor related
SCm
Ppp1r17Cre_NL146
292533477
-0.82
1.13
3.28
0
Superior colliculus, motor related
SCm
Ppp1r17Cre_NL146
307656580
-3.80
1.50
1.77
0
Superior colliculus, motor related
SCm
Ppp1r17Cre_NL146
307691605
-4.36
0.30
0.94
0
Superior colliculus, motor related
SCm
Pvalb-IRES-Cre
182613651
-4.36
0.50
2.01
0
Superior colliculus, motor related
SCm
Slc17a6-IRESCre
294175704
-2.80
0.25
2.40
0
Superior colliculus, motor related
SCm
Slc17a6-IRESCre
305426208
-3.16
1.60
2.85
0
Superior colliculus, sensory related
SCs
C57BL/6J
112827164
-4.36
0.30
0.94
0
Superior colliculus, sensory related
SCs
C57BL/6J
114754390
-3.52
0.60
1.07
0
Superior colliculus, sensory related
SCs
Gad2-IRES-Cre
292211743
-4.72
1.25
1.10
0
Superior colliculus, sensory related
SCs
Pdzk1ip1Cre_KD31
176900059
-3.52
0.60
1.25
0
Superior colliculus, sensory related
SCs
Ppp1r17Cre_NL146
278511717
-4.36
1.25
1.20
0
Superior colliculus, sensory related
SCs
Ppp1r17Cre_NL146
287459601
-3.80
0.30
1.20
0
Superior colliculus, sensory related
SCs
Rorb-IRES2-Cre
304338014
-3.52
0.60
1.25
0
MARCH 2016 v.9
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Superior olivary complex, lateral part
SOCl
Nxph4-2ACreERT2
287668550
0.00
calamus
(-7.32
bregma)
0.05
0.20
0
Supplemental somatosensory area
SSs
A930038C07RikTg1-Cre
286834976
-0.70
4.00, 3.50
1.70
0
Supplemental somatosensory area
SSs
C57BL/6J
100149969
1.10
3.25, 3.00
1.24,
1.69
0
Supplemental somatosensory area
SSs
C57BL/6J
112514915
-0.70
3.88, 3.38
1.66
0
Supplemental somatosensory area
SSs
C57BL/6J
113036264
-0.22
3.88, 3.38
1.65
0
Supplemental somatosensory area
SSs
C57BL/6J
117298988
-0.82
3.90
1.75
0
Supplemental somatosensory area
SSs
C57BL/6J
174360333
0.26
3.65
1.85
0
Supplemental somatosensory area
SSs
C57BL/6J
180717881
0.74
3.30
1.63
0
Supplemental somatosensory area
SSs
Chrna2Cre_OE25
297945448
-0.70
4.00, 3.50
1.70
0
Supplemental somatosensory area
SSs
Cux2-IRES-Cre
278315824
-0.70
4.00, 3.50
1.70
0
Supplemental somatosensory area
SSs
Cux2-IRES-Cre
287951098
-0.22
3.88, 3.38
1.66
0
Supplemental somatosensory area
SSs
Cux2-IRES-Cre
297855879
-0.70
4.00, 3.50
1.70
0
Supplemental somatosensory area
SSs
Efr3aCre_NO108
287996596
-0.70
4.00, 3.50
1.70
0
Supplemental somatosensory area
SSs
Efr3aCre_NO108
301178953
-0.22
3.38, 3.88
1.66
0
Supplemental somatosensory area
SSs
Nr5a1-Cre
266175461
-0.22
3.88, 3.38
1.66
0
Supplemental somatosensory area
SSs
Ntsr1Cre_GN220
159552290
-0.70
3.88, 3.38
1.66
0
Supplemental somatosensory area
SSs
Ntsr1Cre_GN220
159750477
1.10
3.25, 3.00
1.90,
2.35
0
Supplemental somatosensory area
SSs
Oxtr-Cre_ON66
286838022
-0.22
3.40
3.25
0
Supplemental somatosensory area
SSs
Rbp4-Cre_KL100
168163498
-0.70
3.88, 3.38
1.66
0
MARCH 2016 v.9
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Supplemental somatosensory area
SSs
Rbp4-Cre_KL100
286314623
-0.22
3.88, 3.38
1.66
0
Supplemental somatosensory area
SSs
Rorb-IRES2-Cre
301580339
-0.70
3.5, 4.0
1.70
0
Supplemental somatosensory area
SSs
Scnn1a-Tg3-Cre
257636467
-0.70
4.00, 3.50
1.70
0
Supplemental somatosensory area
SSs
Slc18a2Cre_OZ14
268042502
-0.70
4.00, 3.50
1.70
0
Supplemental somatosensory area
SSs
Slc18a2Cre_OZ14
287039061
-0.70
4.00, 3.50
1.70
0
Supplemental somatosensory area
SSs
Syt6-Cre_KI148
159508775
-0.70
3.88, 3.38
1.66
0
Supplemental somatosensory area
SSs
Syt6-Cre_KI148
299829181
-0.22
3.38, 3.88
1.66
0
Supplemental somatosensory area
SSs
Tlx3-Cre_PL56
303616833
-0.22
3.38, 3.88
1.66
0
Suprachiasmatic nucleus
SCH
Avp-IRES2-Cre
287665706
-0.34
0.20
5.60
0
Suprachiasmatic nucleus
SCH
Ppp1r17Cre_NL146
286727483
-0.34
0.20
5.60
0
Suprachiasmatic nucleus
SCH
Rorb-IRES2-Cre
304473503
-4.36
0.50
1.00
0
Suprachiasmatic nucleus
SCH
Vip-IRES-Cre
293431163
-0.34
0.20
5.60
0
Suprageniculate nucleus
SGN
Slc18a2Cre_OZ14
300688721
-3.16
2.10
2.85
0
Supramammillary nucleus
SUM
C57BL/6J
273055501
-2.35
0.13
5.30
0
Supramammillary nucleus
SUMm
Nos1-CreERT2
304947804
-2.80
0.25
4.90
0
Supramammillary nucleus, lateral part
SUMl
C57BL/6J
158314987
-2.80
0.25
4.90
0
Supramammillary nucleus, lateral part
SUMl
Hdc-Cre_IM1
157952778
-2.46
1.00
5.30
0
Supramammillary nucleus, lateral part
SUMl
Hdc-Cre_IM1
175736945
-2.46
1.00
5.30
0
Supramammillary nucleus, lateral part
SUMl
Nxph4-2ACreERT2
304720741
-2.70
0.13
5.20
0
Supraoptic nucleus
SO
Avp-IRES2-Cre
286726065
-0.46
1.15
5.45
0
Supraoptic nucleus
SO
Avp-IRES2-Cre
287666431
-0.46
1.15
5.45
0
Supraoptic nucleus
SO
Oxt-IRES-Cre
147790922
-0.58
1.13
5.40
0
MARCH 2016 v.9
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Supraoptic nucleus
SO
Oxt-IRES-Cre
147968866
-0.58
1.13
5.40
0
Supraoptic nucleus
SO
Oxt-IRES-Cre
178488152
-0.58
1.13
5.40
0
Taenia tecta, dorsal part
TTd
C57BL/6J
133286030
2.34
0.40
2.89
0
Taenia tecta, dorsal part
TTd
C57BL/6J
141601779
1.70
0.40
2.00
0
Taenia tecta, dorsal part
TTd
Cnnm2Cre_KD18
167029528
1.34
0.10
2.80
0
Taenia tecta, dorsal part
TTd
Kcnc2-Cre
176899332
2.34
0.40
2.89
0
Tegmental reticular nucleus
TRN
C57BL/6J
121145045
-4.16
0.25
4.90
0
Tegmental reticular nucleus
TRN
C57BL/6J
147135812
-4.16
0.25
5.15
0
Tegmental reticular nucleus
TRN
Crh-IRES-Cre
(BL)
293752263
-4.72
0.25
4.40
0
Tegmental reticular nucleus
TRN
Gabrr3Cre_KC112
263976175
-4.16
0.25
5.60
0
Tegmental reticular nucleus
TRN
Gabrr3Cre_KC112
301875966
-4.04
0.25
5.90
0
Temporal association areas
TEa
A930038C07RikTg1-Cre
176429574
-4.36
4.00
1.25
0
Temporal association areas
TEa
A930038C07RikTg1-Cre
298350922
-4.36
4.25
1.35
0
Temporal association areas
TEa
C57BL/6J
114250546
-4.60
3.60
0.55
0
Temporal association areas
TEa
C57BL/6J
127089669
-4.16
3.85
0.90
0
Temporal association areas
TEa
C57BL/6J
157062358
0.62
2.90
3.75
0
Temporal association areas
TEa
Chrna2Cre_OE25
292208876
-4.36
4.25
1.35
0
Temporal association areas
TEa
Cux2-IRES-Cre
287953929
-4.60
3.80
0.45
30
Temporal association areas
TEa
Cux2-IRES-Cre
293470216
-4.36
4.00
1.25
0
Temporal association areas
TEa
Ntsr1Cre_GN220
159321806
-4.36
4.00
1.25
0
MARCH 2016 v.9
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Temporal association areas
TEa
Ntsr1Cre_GN220
170261951
-4.04
4.00
0.35,
0.75
30
Temporal association areas
TEa
Ntsr1Cre_GN220
298830868
-4.26
3.40
2.2,
2.6
0
Temporal association areas
TEa
Rbp4-Cre_KL100
166083557
-4.16
3.75
0.81
0
Temporal association areas
TEa
Rbp4-Cre_KL100
167027666
-4.36
4.00
1.25
0
Temporal association areas
TEa
Rbp4-Cre_KL100
298178204
-4.16
3.95
0.85
0
Temporal association areas
TEa
Syt6-Cre_KI148
156786939
-4.16
3.75
0.81
0
Temporal association areas
TEa
Syt6-Cre_KI148
158141324
-4.36
4.00
1.25
0
Temporal association areas
TEa
Tlx3-Cre_PL56
294516943
-4.36
4.00
1.25
0
Triangular nucleus of septum
TRS
C57BL/6J
125830911
-0.10
0.10
2.30
0
Tuberal nucleus
TU
Avp-IRES2-Cre
267396430
-0.58
1.15
5.50
0
Tuberal nucleus
TU
Avp-IRES2-Cre
267397226
-0.58
1.15
5.50
0
Tuberal nucleus
TU
Esr1-2A-Cre
176886958
-1.50
0.78
5.75
0
Tuberal nucleus
TU
Esr1-2A-Cre
264320076
-1.50
0.78
5.76
0
Tuberomammillary nucleus, ventral part
TMv
Hdc-Cre_IM1
157952068
-2.46
0.55
5.65
0
Ventral anterior-lateral complex of the
thalamus
VAL
C57BL/6J
100142569
-0.82
1.13
3.28
0
Ventral anterior-lateral complex of the
thalamus
VAL
C57BL/6J
113884251
-0.70
1.53
3.48
0
Ventral anterior-lateral complex of the
thalamus
VAL
Gal-Cre_KI87
156393801
-0.58
3.40
4.94
40
Ventral anterior-lateral complex of the
thalamus
VAL
Grik4-Cre
300237470
-0.70
1.53
3.48
0
Ventral anterior-lateral complex of the
thalamus
VAL
Prkcd-GluClaCFP-IRES-Cre
292321278
-0.82
1.13
3.28
0
Ventral anterior-lateral complex of the
thalamus
VAL
Slc17a6-IRESCre
310193233
-1.34
0.85
3.97
0
MARCH 2016 v.9
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Ventral auditory area
AUDv
C57BL/6J
112881858
-2.80
4.40
1.60
0
Ventral auditory area
AUDv
Tlx3-Cre_PL56
303582161
-2.46
4.35
0.85
0
Ventral cochlear nucleus
VCO
C57BL/6J
272825299
-5.52
2.50
3.65
0
Ventral cochlear nucleus
VCO
Ntrk1-IRES-Cre
265135682
-5.52
2.50
3.65
0
Ventral cochlear nucleus
VCO
Pvalb-IRES-Cre
167211503
-5.52
2.50
3.65
0
Ventral medial nucleus of the thalamus
VM
C57BL/6J
174736554
-1.46
0.80
4.25
0
Ventral medial nucleus of the thalamus
VM
C57BL/6J
180707817
-1.46
0.80
4.25
0
Ventral medial nucleus of the thalamus
VM
Cck-IRES-Cre
277849256
-3.80
0.04
2.85
0
Ventral medial nucleus of the thalamus
VM
Cck-IRES-Cre
306444486
-1.50
0.35
5.30
0
Ventral medial nucleus of the thalamus
VM
Gabrr3Cre_KC112
170859382
-1.34
0.95
4.55
0
Ventral medial nucleus of the thalamus
VM
Ppp1r17Cre_NL146
268205344
-1.34
0.85
3.97
0
Ventral medial nucleus of the thalamus
VM
Prkcd-GluClaCFP-IRES-Cre
267929554
-1.34
0.85
3.97
0
Ventral medial nucleus of the thalamus
VM
Prkcd-GluClaCFP-IRES-Cre
278067445
-1.34
0.32
4.05
0
Ventral part of the lateral geniculate
complex
LGv
C57BL/6J
147212977
-2.30
2.55
3.00
0
Ventral part of the lateral geniculate
complex
LGv
Pdzk1ip1Cre_KD31
157765542
-2.30
2.55
3.00
0
Ventral part of the lateral geniculate
complex
LGv
Ppp1r17Cre_NL146
278398949
-2.80
2.85
3.00
0
Ventral part of the lateral geniculate
complex
LGv
Slc32a1-IRESCre
267538006
-2.46
2.60
2.36
0
Ventral part of the lateral geniculate
complex
LGv
Sst-IRES-Cre
299623794
-2.30
2.55
3.00
0
Ventral posterolateral nucleus of the
thalamus
VPL
C57BL/6J
158375425
-1.70
1.90
3.40
0
MARCH 2016 v.9
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Ventral posterolateral nucleus of the
thalamus
VPL
Grik4-Cre
287446625
-0.70
1.53
3.48
0
Ventral posterolateral nucleus of the
thalamus
VPL
Grik4-Cre
287447332
-1.22
2.00
3.09
0
Ventral posterolateral nucleus of the
thalamus
VPL
Grik4-Cre
301877386
-1.22
2.00
3.09
0
Ventral posterolateral nucleus of the
thalamus
VPL
Scnn1a-Tg2-Cre
156202272
-1.70
1.90
3.40
0
Ventral posteromedial nucleus of the
thalamus
VPM
C57BL/6J
100141223
-1.34
0.85
3.97
0
Ventral posteromedial nucleus of the
thalamus
VPM
C57BL/6J
180601025
-1.46
2.20
3.09
0
Ventral posteromedial nucleus of the
thalamus
VPM
Gal-Cre_KI87
182515576
-1.82
1.50
3.25
0
Ventral posteromedial nucleus of the
thalamus
VPM
Gal-Cre_KI87
278070717
-2.00
2.15
2.60
0
Ventral posteromedial nucleus of the
thalamus
VPM
Ppp1r17Cre_NL146
268206050
-1.70
1.90
3.40
0
Ventral posteromedial nucleus of the
thalamus
VPM
Ppp1r17Cre_NL146
268399868
-1.82
1.60
3.30
0
Ventral posteromedial nucleus of the
thalamus
VPM
Scnn1a-Tg2-Cre
156202979
-1.82
1.50
3.25
0
Ventral posteromedial nucleus of the
thalamus
VPM
Slc17a6-IRESCre
312240825
-1.70
1.90
3.40
0
Ventral posteromedial nucleus of the
thalamus, parvicellular part
VPMpc
Ppp1r17Cre_NL146
278509488
-1.94
0.90
5.00
0
Ventral posteromedial nucleus of the
thalamus, parvicellular part
VPMpc
Scnn1a-Tg2-Cre
162018169
-2.06
0.45
4.00
0
Ventral posteromedial nucleus of the
thalamus, parvicellular part
VPMpc
Scnn1a-Tg2-Cre
162018879
-1.94
1.10
4.00
0
Ventral premammillary nucleus
PMv
Avp-IRES2-Cre
267398651
-1.58
0.75
5.75
0
MARCH 2016 v.9
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Ventral premammillary nucleus
PMv
Lepr-IRES-Cre
167656152
-2.46
0.55
5.65
0
Ventral premammillary nucleus
PMv
Slc6a3-Cre
263780018
-2.46
0.55
5.65
0
Ventral premammillary nucleus
PMv
Tac1-IRES2-Cre
299654968
-1.46
0.39
5.50
0
Ventral premammillary nucleus
PMv
Th-Cre_FI172
286728896
-1.70
0.20
5.90
0
Ventral tegmental area
VTA
C57BL/6J
126710740
-2.46
0.55
5.65
0
Ventral tegmental area
VTA
C57BL/6J
127796728
-2.55
0.13
4.55
0
Ventral tegmental area
VTA
Cck-IRES-Cre
171021829
-3.28
0.36
4.13
0
Ventral tegmental area
VTA
Chrna2Cre_OE25
278178382
-3.52
0.28
4.30
0
Ventral tegmental area
VTA
Erbb4-2ACreERT2
127867804
-3.28
0.36
4.13
0
Ventral tegmental area
VTA
Erbb4-2ACreERT2
165975096
-3.28
0.36
4.13
0
Ventral tegmental area
VTA
Gabrr3Cre_KC112
300166697
-2.80
0.25
4.90
0
Ventral tegmental area
VTA
Nos1-CreERT2
304720034
-2.46
0.55
5.65
0
Ventral tegmental area
VTA
Pdzk1ip1Cre_KD31
166054222
-3.28
0.36
4.13
0
Ventral tegmental area
VTA
Slc17a6-IRESCre
302087552
-2.30
0.25
4.37
0
Ventral tegmental area
VTA
Slc18a2Cre_OZ14
287492899
-2.80
0.80
5.15
0
Ventral tegmental area
VTA
Slc18a2Cre_OZ14
301732962
-3.28
0.36
4.13
0
Ventral tegmental area
VTA
Slc6a3-Cre
160540751
-3.28
0.36
4.13
0
Ventral tegmental area
VTA
Syt17-Cre_NO14
127798146
-3.28
0.36
4.13
0
Ventral tegmental area
VTA
Th-Cre_FI172
304337288
-3.28
0.36
4.13
0
Ventral tegmental area
VTA
Th-IRES-CreER
156314762
-3.28
0.36
4.13
0
MARCH 2016 v.9
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Ventromedial hypothalamic nucleus
VMH
Adcyap1-2A-Cre
303708513
-1.46
0.39
5.50
0
Ventromedial hypothalamic nucleus
VMH
C57BL/6J
157549402
-0.70
0.37
5.40
0
Ventromedial hypothalamic nucleus
VMH
C57BL/6J
175106769
-0.70
0.40
5.46
0
Ventromedial hypothalamic nucleus
VMH
C57BL/6J
277615922
-0.70
0.40
5.55
0
Ventromedial hypothalamic nucleus
VMH
Erbb4-2ACreERT2
277854916
-1.70
0.20
5.90
0
Ventromedial hypothalamic nucleus
VMH
Esr1-2A-Cre
176888661
-1.50
0.78
5.75
0
Ventromedial hypothalamic nucleus
VMH
Esr1-2A-Cre
264248605
-1.50
0.78
5.76
0
Ventromedial hypothalamic nucleus
VMH
Esr1-2A-Cre
264319363
-1.50
0.78
5.76
0
Ventromedial hypothalamic nucleus
VMH
Fezf1-2A-dCre
267540168
-1.46
0.39
5.50
0
Ventromedial hypothalamic nucleus
VMH
Fezf1-2A-dCre
292211026
-1.46
0.39
5.50
0
Ventromedial hypothalamic nucleus
VMH
Ins2-Cre
286319033
-1.46
0.39
5.50
0
Ventromedial hypothalamic nucleus
VMH
Nr5a1-Cre
114290225
-1.46
0.39
5.30
0
Ventromedial hypothalamic nucleus
VMH
Nr5a1-Cre
182337561
-1.46
0.39
5.30
0
Ventromedial hypothalamic nucleus
VMH
Slc17a6-IRESCre
286556208
-1.50
0.35
5.30
0
Ventromedial hypothalamic nucleus
VMH
Sst-IRES-Cre
304948510
-1.58
0.75
5.75
0
Visceral area
VISC
C57BL/6J
180074890
-1.22
4.00
2.60
0
Visceral area
VISC
C57BL/6J
180917660
-0.58
4.20
2.15
0
Visceral area
VISC
Rbp4-Cre_KL100
249402048
1.10
3.25, 3.00
1.90,
2.35
0
Visceral area
VISC
Syt6-Cre_KI148
177783918
1.10
3.25, 3.00
1.90,
2.35
0
Zona incerta
ZI
C57BL/6J
113095845
-2.18
1.75
4.12
0
Zona incerta
ZI
C57BL/6J
126190743
-1.70
1.40
4.45
0
Zona incerta
ZI
C57BL/6J
127797441
-1.34
0.95
4.55
0
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Zona incerta
ZI
C57BL/6J
157063074
-3.52
2.50
1.35
0
Zona incerta
ZI
C57BL/6J
175018829
-2.70
1.50
3.50
0
Zona incerta
ZI
Cart-Tg1-Cre
266174751
-1.50
0.35
5.20
0
Zona incerta
ZI
Drd3-Cre_KI196
304858700
-2.18
1.75
4.12
0
Zona incerta
ZI
Gabrr3Cre_KC112
170263370
-1.70
1.40
4.45
0
Zona incerta
ZI
Gabrr3Cre_KC112
170858675
-2.18
1.75
4.12
0
Zona incerta
ZI
Gad2-IRES-Cre
156315468
-1.34
0.95
4.55
0
Zona incerta
ZI
Gad2-IRES-Cre
286662551
-2.18
1.75
4.12
0
Zona incerta
ZI
Gad2-IRES-Cre
305321883
-1.70
1.40
4.85
0
Zona incerta
A13
Lypd6Cre_KL156
299760587
-1.34
1.00
4.84
0
Zona incerta
ZI
Pvalb-IRES-Cre
301539438
-2.18
1.75
4.12
0
Zona incerta
ZI
Slc17a6-IRESCre
168663472
-1.70
1.40
4.45
0
Zona incerta
ZI
Slc32a1-IRESCre
171065906
-2.18
1.75
4.12
0
Zona incerta
ZI
Slc32a1-IRESCre
171066613
-1.34
0.95
4.55
0
Zona incerta
ZI
Slc32a1-IRESCre
305379705
-1.70
1.40
4.85
0
Zona incerta
ZI
Tac1-IRES2-Cre
300923916
-0.80
0.25
4.85
0
Zona incerta
ZI
Th-Cre_FI172
306270474
-1.34
0.95
4.55
0
* For the majority of target sites, the anterior/posterior (AP) coordinates are referenced from Bregma, the medial/lateral (ML) coordinates are distance
from midline at Bregma, and dorsal/ventral (DV) coordinates are measured from the pial surface of the brain. For several of the caudal-most medullary
nuclei (e.g. gracile nucleus and spinal nucleus of the trigeminal, caudal part), the calamus (at the floor of the 4th ventricle) is used as a registration
point instead of Bregma.
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Table 2. Stereotaxic coordinates used for BDA vs. rAAV comparison.
Brain region (primary
structure infected by
rAAV)
Reference
atlas acronym
Mouse strain
Anterior olfactory nucleus
AON
C57BL/6J
100142693
2.96
1.14
2.67
0
Anterior olfactory nucleus
AON
C57BL/6J
100144288
2.96
1.14
2.67
0
Anterior olfactory nucleus
AON
C57BL/6J
100147358
2.96
1.14
2.67
0
Caudoputamen
CP
C57BL/6J
100142699
-0.34
1.90
3.40
0
Caudoputamen
CP
C57BL/6J
100142293
0.74
1.75
2.60
0
Caudoputamen
CP
C57BL/6J
100144295
0.74
1.75
2.60
0
Caudoputamen
CP
C57BL/6J
100145836
0.74
1.75
2.60
0
Caudoputamen
CP
B6129SF1/J
112311239
-0.34
1.90
3.40
0
Caudoputamen
CP
B6129SF1/J
159609527
0.74
1.75
2.60
0
Caudoputamen
CP
B6129SF1/J
183568601
0.74
1.75
2.60
0
Field CA1
CA1
C57BL/6J
100141775
-1.94
1.00
1.30
0
Field CA1
CA1
C57BL/6J
100141772
-1.94
1.00
1.30
0
Field CA1
CA1
B6129SF1/J
113067695
-1.94
1.00
1.30
0
Gigantocellular reticular
nucleus
GRN
C57BL/6J
100142687
-7.20
0.50
4.75
0
Globus pallidus, external
segment
GPe
C57BL/6J
100141804
-0.34
1.90
3.40
0
Inferior colliculus, external
nucleus
ICe
C57BL/6J
100145841
-4.36
1.59
1.87
0
Intermediate reticular nucleus
IRN
C57BL/6J
100144286
-7.20
0.50
4.75
0
Kolliker-Fuse subnucleus
KF
C57BL/6J
100142301
-5.20
1.40
3.58
0
Lateral hypothalamic area
LHA
C57BL/6J
100141800
-1.06
1.00
4.75
0
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
page 114 of 117
Experiment ID
AP
ML
DV
Angle°
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Brain region (primary
structure infected by
rAAV)
Reference
atlas acronym
Mouse strain
Lateral hypothalamic area
LHA
C57BL/6J
100147352
-1.06
1.12
4.88
0
Lateral hypothalamic area
LHA
C57BL/6J
100142700
-1.06
1.00
4.75
0
Lateral hypothalamic area
LHA
B6129SF1/J
113066020
-1.06
1.00
4.75
0
Lateral hypothalamic area
LHA
C57BL/6J
159616564
-0.70
1.12
5.00
0
Lateral posterior nucleus of the
thalamus
LP
C57BL/6J
112296535
-2.30
2.00
2.45
0
Lateral posterior nucleus of the
thalamus
LP
C57BL/6J
100141798
-2.30
2.00
2.45
0
Lateral septal nucleus
LS
B6129SF1/J
100147797
0.14
0.50
2.80
0
Lateral septal nucleus
LS
C57BL/6J
159617389
0.14
0.50
2.80
0
Lateral septal nucleus, caudal
(caudodorsal) part
LSc
C57BL/6J
112312484
0.14
0.50
2.80
0
Lateral septal nucleus, rostral
(rostroventral) part
LSr
C57BL/6J
100142294
0.14
0.50
2.80
0
Lobules IV-V
CUL 4,5
C57BL/6J
100145843
-5.88
0.50
0.40
0
Lobules IV-V
CUL4, 5
C57BL/6J
100147373
-6.24
0.50
0.94
0
Lobules IV-V
CUL4, 5
C57BL/6J
100147369
-6.24
0.50
0.94
0
Lobules IV-V
CUL4, 5
C57BL/6J
100147375
-6.24
0.50
0.94
0
Medullary reticular nucleus,
ventral part
MDRNv
C57BL/6J
100145829
-7.20
0.50
4.75
0
Midbrain reticular nucleus
MRN
C57BL/6J
100142300
-3.40
0.75
3.60
0
Midbrain reticular nucleus
MRN
C57BL/6J
100143833
-3.40
0.75
3.60
0
Midbrain reticular nucleus
MRN
C57BL/6J
100145833
-3.40
0.75
3.60
0
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
page 115 of 117
Experiment ID
AP
ML
DV
Angle°
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Brain region (primary
structure infected by
rAAV)
Reference
atlas acronym
Mouse strain
Midbrain reticular nucleus
MRN
C57BL/6J
100142704
-3.28
1.50
4.30
0
Posterior complex of the
thalamus
PO
C57BL/6J
112297892
-1.82
1.50
3.25
0
Posterior complex of the
thalamus
PO
B6129SF1/J
113066858
-1.82
1.50
3.25
0
Primary motor area
MOp
C57BL/6J
100141268
1.54
1.60
0.40, 0.80
0
Primary motor area
MOp
C57BL/6J
100145496
1.54
1.60
0.40, 0.80
0
Primary motor area
MOp
C57BL/6J
100142689
1.54
1.60
0.40, 0.80
0
Primary motor area
MOp
B6129SF1/J
100147371
1.54
1.60
0.40, 0.80
0
Primary motor area
MOp
C57BL/6J
159613261
1.54
1.60
0.40, 0.80
0
Primary somatosensory area,
barrel field
SSp-bfd
C57BL/6J
100141261
-1.46
3.25
0.40, 0.80
20
Primary somatosensory area,
barrel field
SSp-bfd
C57BL/6J
100142701
-1.46
3.25
0.35, 0.80
20
Primary somatosensory area,
barrel field
SSp-bfd
C57BL/6J
159611609
-1.46
3.25
0.40, 0.80
20
Primary somatosensory area,
trunk
SSp-tr
C57BL/6J
100147356
-1.46
3.25
0.40, 0.80
20
Primary somatosensory area,
trunk
SSp-tr
B6129SF1/J
159610371
-1.46
3.25
0.40, 0.80
20
Primary visual area
VISp
C57BL/6J
100141263
-4.16
2.75
0.45
10
Primary visual area
VISp
C57BL/6J
100141777
-4.16
2.75
0.45
10
Primary visual area
VISp
C57BL/6J
100144292
-4.16
2.75
0.45
10
Primary visual area
VISp
C57BL/6J
159609113
-4.16
2.75
0.45
10
Primary visual area
VISp
C57BL/6J
159614086
-4.16
2.75
0.45
10
MARCH 2016 v.9
Injection Sites and Stereotaxic Coordinates
page 116 of 117
Experiment ID
AP
ML
DV
Angle°
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Brain region (primary
structure infected by
rAAV)
Reference
atlas acronym
Mouse strain
Experiment ID
AP
ML
DV
Angle°
Primary visual area
VISp
B6129SF1/J
159612434
-4.16
2.75
0.45
10
Septofimbrial nucleus
SF
C57BL/6J
100141266
0.14
0.50
2.80
0
Septofimbrial nucleus
SF
B6129SF1/J
112296088
-1.46
3.25
0.40, 0.80
20
Subiculum
SUB
C57BL/6J
100142710
-2.92
1.17
1.40
0
Subiculum
SUB
C57BL/6J
100145827
-2.92
1.17
1.40
0
Subiculum
SUB
C57BL/6J
112314965
-2.92
1.17
1.40
0
Substantia innominata
SI
B6129SF1/J
113071071
-1.22
2.75
3.80
0
Substantia nigra, compact part
SNc
C57BL/6J
100147802
-3.28
1.50
4.30
0
Substantia nigra, reticular part
SNr
C57BL/6J
100142698
-3.28
1.50
4.30
0
Substantia nigra, reticular part
SNr
C57BL/6J
112302860
-3.28
1.50
4.30
0
Superior colliculus, motor
related
SCm
C57BL/6J
100143837
-4.36
1.59
1.87
0
Superior colliculus, motor
related
SCm
C57BL/6J
100142302
-4.36
1.59
1.87
0
Superior colliculus, motor
related
SCm
B6129SF1/J
113072328
-4.36
1.59
1.87
0
Superior colliculus, sensory
related
SCs
C57BL/6J
100142706
-4.36
0.50
0.42
0
Ventral posteromedial nucleus
of the thalamus
VPM
C57BL/6J
100143831
-1.82
1.50
3.25
0
Ventral posteromedial nucleus
of the thalamus
VPM
C57BL/6J
100149111
-1.82
1.50
3.25
0
* For most cases presented, the anatomical area(s) of tracer uptake are well matched. However, there are cases with considerable differences in the
uptake area between BDA and rAAV due to uneven infection or leakage along the needle tract into neighboring anatomical regions. In such cases, the
primary structure infected by rAAV or BDA is listed separately on the website.
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