Download Supporting information Table S1: Photosynthesis related genes

Supporting information
Table S1: Photosynthesis related genes (according to GO annotation) downregulated
during de- and rehydration.
The column ID shows the Phypa identifier for the gene (v1.2), the column description shows
the gene annotation and the column goAcc shows the GO accession numbers associated with
the gene.
ID
Description
goAcc
Phypa_35924
F4H5.23; photosystem II oxygen-evolving complex 23 (OEC23) [KO:K02717]
[Arabidopsis thaliana]
GO:0005509; GO:0009654; GO:0015979; GO:0019898
Phypa_46695
F2G19.4; chlorophyll A-B binding protein, putative (LHCA5) [Arabidopsis thaliana]
GO:0009765; GO:0016020
Phypa_61027
photosystem ii subunit
GO:0009654; GO:0015979; GO:0016020
Phypa_108362
Chlorophyll a-b binding protein, chloroplast precursor (LHCII type I CAB) (LHCP)
[Physcomitrella patens]
GO:0009765; GO:0016020
Phypa_109427
Photosystem I reaction center subunit II, chloroplast precursor (Photosystem I 20
GO:0009538; GO:0015979
kDa subunit) (PSI-D) [Spinacia oleracea]
Phypa_122649
probable photosystem i chain xi precursor
GO:0009538; GO:0015979
Phypa_129602
psi reaction center subunit ii
GO:0009538; GO:0015979
Phypa_130189
T19E23.12; photosystem I reaction center subunit III family protein [KO:K02694]
[Arabidopsis thaliana]
GO:0009538; GO:0015979
Phypa_143643
psi-h precursor
GO:0009538; GO:0015979
Phypa_146248
photosystem ii protein
GO:0009765; GO:0016020
Phypa_146725
chlorophyll a b-binding protein
GO:0009765; GO:0016020
Phypa_147017
chlorophyll a-b binding protein of lhcii
GO:0009765; GO:0016020
Phypa_151795
Photosystem I reaction center subunit III, chloroplast precursor (Light-harvesting
complex I 17 kDa protein) (PSI-F) [Flaveria trinervia]
GO:0009538; GO:0015979
Phypa_162315
F7J7.220; oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ1)
(PSBQ) [Arabidopsis thaliana]
GO:0005509; GO:0009654; GO:0015979; GO:0019898
Phypa_169593
lhcsr1 gene for putative chlorophyll a-b binding protein LHCSR1
GO:0009765; GO:0016020
Phypa_177617
putative 33kDa oxygen evolvingprotein of photosystem II [Oryza sativa (japonica
cultivar-group)]
GO:0005509; GO:0009654; GO:0015979; GO:0019898;
GO:0042549
Phypa_192554
photosystem ii oxygen-evolving complex protein 3-like
GO:0005509; GO:0009654; GO:0015979; GO:0019898
Phypa_200318
putative 33kDa oxygen evolvingprotein of photosystem II [Oryza sativa (japonica
cultivar-group)]
GO:0005509; GO:0009654; GO:0015979; GO:0019898;
GO:0042549
Phypa_200376
geranylgeranyl reductase
GO:0006118; GO:0008152; GO:0015036; GO:0015979;
GO:0015995; GO:0016491; GO:0045550
Phypa_204424
F1M20.15; geranylgeranyl reductase [Arabidopsis thaliana]
GO:0006118; GO:0008152; GO:0015036; GO:0015979;
GO:0015995; GO:0016491; GO:0045550
Phypa_212016
GO:0005509; GO:0009654; GO:0015979; GO:0019898
Phypa_219547
Chlorophyll a/b-binding protein
GO:0009765; GO:0016020
Phypa_219830
F15L11.2; chlorophyll A-B binding protein / LHCII type II (LHCB2.1) (LHCB2.3)
[Arabidopsis thaliana]
GO:0009765; GO:0016020
Table S2: Members of the AP2/EREBP transcription factor family up- and
downregulated by different light treatments
The column ID shows the Phypa identifier for the gene (genome annotation v1.2), the
following columns show the comparisons between two of the light conditions at a time.
Genes are shown as up- and downregulated in the first of the listed treatments (e,g, sun vs.
dark up are genes upregulated in sun light as compared to darkness). (cc = climate chamber,
x
x
x
Phypa_64121
x
x
x
x
x
x
x
x
Phypa_171511
x
x
x
x
x
x
x
x
x
Phypa_233473
x
x
Phypa_29828
x
x
Phypa_163635
x
x
x
x
x
x
x
x
x
x
x
x
x
x
x
x
Phypa_81770
x
x
x
x
x
x
x
Phypa_27792
x
x
x
x
x
x
x
x
x
Phypa_223126
Phypa_29777
Phypa_128717
x
x
x
Phypa_165664
Phypa_135936
x
x
x
x
x
x
x
x
x
x
x
x
x
x
x
x
x
Phypa_95231
Phypa_160758
x
x
UV vs dark up
x
cc vs dark up
x
x
sun vs dark up
x
cc vs UV down
x
x
cc vs UV up
x
UV vs dark down
cc vs dark down
strong vs dark down
strong vs dark up
sun vs dark down
strong vs UV down
strong vs UV up
sun vs UV down
Phypa_164899
sun vs cc up
sun vs UV up
x
strong vs cc up
Phypa_126548
sun vs cc down
ID
sun vs strong light up
UV = ultraviolet).
x
x
x
x
x
x
x
x
x
x
x
x
x
x
x
x
x
Phypa_166576
x
x
x
x
x
x
x
x
x
x
Phypa_159751
Phypa_9783
x
x
x
Phypa_170406
x
Phypa_166250
Phypa_148338
Phypa_163821
x
x
x
x
x
x
x
x
x
x
x
x
x
x
x
x
x
x
x
Phypa_18737
x
Phypa_19432
x
x
x
Phypa_111672
x
x
x
Phypa_169663
x
Phypa_39601
count
4
8
1
8
cc = climate chamber; UV = ultraviolet
18
x
11
18
x
x
x
x
x
x
x
x
x
x
x
x
x
x
x
x
x
Phypa_48867
x
x
Phypa_19913
Phypa_168390
x
x
x
x
Phypa_29830
x
x
x
x
x
x
x
x
9
11
x
15
x
1
x
17
1
x
19
2
x
10
14
x
15
Table S3: Experimental conditions of sun light, strong light, UV light, de- and
rehydration and darkness.
The flux column shows the light intensity in µmol*(s-1*m-2) of photosynthetically active
radiation (PAR, 400-700 nm).
Treatment
Duration
Temperature
Flux
[°C]
[µmol*s *m ]
[mW/cm-2]
-1
UV-B
-2
sun light
2h
24 - 32.7
1600-1800
0.145-0.285
strong light
2h
18-19
979-1008
0.0265-0.0355
UV-B 303 nm
1h
20.5
19.8
1.29
darkness
3 weeks
25
0
0
dehydration
to 50% loss of fresh
weight
22
70
0.001
rehydration
2 h tap H2O
22
70
0.001
4 weeks
25
70
0.001
juvenile gametophores
Table S4: A. thaliana studies chosen from Genevestigator.
To include the expression data in Fig. 5, selected A. thaliana studies were used. The
Genevestigator nomenclature is shown.
strong light
high light (Col-0) / low light grown seedlings (Col-0)
high light (cry1) / low light grown seedlings (cry1)
high light (hy5) / low light grown seedlings (hy5)
high light / 21°C (140-200min) / moderate light / 21°C (140-200min)
high light / 21°C (220-280min) / moderate light / 21°C (220-280min)
high light / 21°C (300-360min) / moderate light / 21°C (300-360min)
high light / 21°C (5-40min) / moderate light / 21°C (5-40min)
high light / 21°C (60-120min) / moderate light / 21°C (60-120min)
high light study 2 (3h) / untreated leaf samples (Col-4)
high light study 2 (8h) / untreated leaf samples (Col-4)
high light study 3 (3h) / untreated leaf samples (CAT2HP1)
high light study 3 (8h) / untreated leaf samples (CAT2HP1)
high light study 4 (distal) / low light grown leaf samples
high light study 4 (exposed) / low light grown leaf samples
high light study 5 / untreated cell culture samples
high light study 6 (ape2) / low light grown leaf samples (ape2)
high light study 6 (Ws-2) / low light grown leaf samples (Ws-2)
high light study 7 (AtWRKY40 OE1) / untreated leaf samples (AtWRKY40 OE1)
high light study 7 (atwrky40) / untreated leaf samples (atwrky40)
high light study 7 (AtWRKY63 OE1) / untreated leaf samples (AtWRKY63 OE1)
high light study 7 (atwrky63) / untreated leaf samples (atwrky63)
high light study 7 (Col-0) / untreated leaf samples (Col-0)
high light study 8 (15min) / untreated shoot apical meristem samples (15min)
high light study 8 (45min) / untreated shoot apical meristem samples (45min)
light / low CO2 / dark / low CO2
light study 2 / dark grown Col-0 seedlings
light study 3 / dark grown Ler-0 seedlings
light study 4 (cli186) / dark grown cli186 seedlings
light study 5 (cli186) / dark grown cli186 seedlings
light study 6 (Col-0) / dark grown Col-0 seedlings
light study 6 (csn3-1) / dark grown csn3-1 seedlings
light study 6 (csn4-1) / dark grown csn4-1 seedlings
light study 6 (csn5) / dark grown csn5 seedlings
Table S4 continued
UV light
shift UV filtered WG345 to UV filtered WG305 (Col-0) / UV filtered WG345 (Col-0)
shift UV filtered WG345 to UV filtered WG305 (cop1-4) / UV filtered WG345 (cop1-4)
shift UV filtered WG345 to UV filtered WG305 (uvr8-6) / UV filtered WG345 (uvr8-6)
shift UV filtered WG345 to UV filtered WG305 study 2 (Col-0) / UV filtered WG345 (Col-0)
shift UV filtered WG345 to UV filtered WG305 study 2 (cop1-4) / UV filtered WG345 (cop1-4)
shift UV filtered WG345 to UV filtered WG305 study 2 (uvr8-6) / UV filtered WG345 (uvr8-6)
UV filtered WG295 (1h) / seedlings irradiated with 327nm cut-off (1h)
UV filtered WG295 (6h) / seedlings irradiated with 327nm cut-off (6h)
UV filtered WG305 (1h) / seedlings irradiated with 327nm cut-off (1h)
UV filtered WG305 (6h) / seedlings irradiated with 327nm cut-off (6h)
UV filtered WG305 study 3 (Col-0) / UV filtered WG345 (Col-0)
UV filtered WG305 study 3 (cop1-4) / UV filtered WG345 (cop1-4)
UV filtered WG305 study 3 (uvr8-6) / UV filtered WG345 (uvr8-6)
UV unfiltered max-310nm (1h) / seedlings irradiated with 327nm cut-off (1h)
UV unfiltered max-310nm (6h) / seedlings irradiated with 327nm cut-off (6h)
UV-A / dark grown Col-0 seedlings
UV-AB / dark grown Col-0 seedlings
UV-B (Col-0) / shift LD to CL (Col-0)
UV-B (sng1-1) / shift LD to CL (sng1-1)
UV-B (tt4(C1)) / shift LD to CL (tt4(C1))
protoplasting
guard cell protoplast
mesophyll cell protoplast
root protoplast
root cap protoplast
columella protoplast
lateral root cap protoplast
root epidermis and lateral root cap protoplast
root cortex protoplast
root endodermis and quiescent center protoplast
root stele protoplast
root phloem protoplast
root protophloem and metaphloem protoplast
root phloem companion cell protoplast
root xylem protoplast
root pericycle protoplast
root phloem pole pericycle protoplast
root xylem pole pericycle protoplast
root cortex, endodermis and quiescent center protoplast
root epidermis protoplast
root epidermal atrichoblast protoplast
root hair cell protoplast
lateral root primordium protoplast
leaf protoplast
Table S4 continued
drought
drought (dor) / untreated leaf samples (dor)
drought (wt) / untreated leaf samples (Col)
drought study 11 (Col-0) / mock treated seedling samples (Col-0)
drought study 11 (hai1-2) / mock treated seedling samples (hai1-2)
drought study 12 (Bur-0) / mock treated Bur-0 rosette leaf samples
drought study 12 (CIBC-17) / mock treated CIBC-17 rosette leaf samples
drought study 12 (Col-2) / mock treated Col-2 rosette leaf samples
drought study 12 (HR-5) / mock treated HR-5 rosette leaf samples
drought study 12 (Knox-18) / mock treated Knox-18 rosette leaf samples
drought study 12 (Ler-1) / mock treated Ler-1 rosette leaf samples
drought study 12 (NFA-10) / mock treated NFA-10 rosette leaf samples
drought study 12 (SQ-8) / mock treated SQ-8 rosette leaf samples
drought study 12 (Ts-1) / mock treated Ts-1 rosette leaf samples
drought study 12 (Ws-2) / mock treated Ws-2 rosette leaf samples
drought study 13 (Ag-0) / mock treated Ag-0 rosette leaf samples
drought study 13 (Bil-5) / mock treated Bil-5 rosette leaf samples
drought study 13 (Eden-1) / mock treated Eden-1 rosette leaf samples
drought study 13 (Got-22) / mock treated Got-22 rosette leaf samples
drought study 13 (Omo2-3) / mock treated Omo2-3 rosette leaf samples
drought study 13 (Tamm-2) / mock treated Tamm-2 rosette leaf samples
drought study 13 (Ull2-5) / mock treated Ull2-5 rosette leaf samples
drought study 14 (camta1-3) / untreated camta1-3 rosette leaf samples
drought study 14 (Col-0) / untreated Col-0 rosette leaf samples
drought study 15 (camta1-3) / untreated camta1-3 root samples
drought study 15 (Col-0) / untreated Col-0 root samples
drought study 16 (Col) / mock treated Col whole plant samples
drought study 16 (srk2dei) / mock treated srk2dei whole plant samples
drought study 2 (Col-0) / untreated leaf samples (Col-0)
drought study 2 (Trans.) / untreated leaf samples (Trans.)
drought study 3 (early) / untreated green tissue samples (early)
drought study 3 (late) / untreated green tissue samples (late)
drought study 4 (early) / untreated root samples (early)
drought study 4 (late) / untreated root samples (late)
drought study 5 (Col-0) / untreated all aerial tissue samples (Col-0)
drought study 5 (late day) / untreated Col-0 rosette samples (late day)
drought study 5 (midday) / untreated Col-0 rosette samples (midday)
drought study 5 (midnight) / untreated Col-0 rosette samples (midnight)
drought study 5 (pre-dawn) / untreated Col-0 rosette samples (pre-dawn)
drought study 5 (sf6) / untreated all aerial tissue samples (sf6)
drought study 6 (Col-0) / untreated plant samples (Col-0)
drought study 6 (srk2cf) / untreated plant samples (srk2cf)
drought study 7 (Col-0) / untreated plant samples (Col-0)
drought study 7 (srk2cf) / untreated plant samples (srk2cf)
drought study 8 (35S::ABF3-48) / untreated 35S::ABF3-48 seedling samples (2h)
drought study 8 (control-48) / untreated control-48 seedling samples (2h)
drought study 9 (35S::ABF3-48) / untreated 35S::ABF3-48 seedling samples (24h)
drought study 9 (control-48) / untreated control-48 seedling samples (24h)