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Table S1. Evidence of the cellulase gene and pathogene capacity of the most important bacterial groups found in the vermicompost leachate.
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Group
Species with the cellulase gene
Reference
Pathogen
Reference
——————————————————————————————————————————————————————————————
Tenericutes
Mollicutes
Coprobacillus sp. D7
Ward et al. Unpubl., NCBI: ZP_04564471.1
Human
(6, 39, 9)
Acholeplasma
Acholeplasma laidlawii, Strain PG-8A,
(21), NCBI: NC_010163.1
Human
(28)
version 16.5
Subhraveti et al. Unpubl.
Gammaproteobacteria
Pseudomonas
Pseudomonas stutzeri DSM 10701
(3), NCBI: YP_006523515.1
Human
(25, 38)
Betaproteobacteria
Burkholderiales
Burkholderiales bacterium 1_1_47
Ward et al. Unpubl., NCBI: ZP_07342547.1
Human
(10)
Alcaligenaceae
Bordetella avium 197N
(40), GenBank: CAJ50258.1
Human
(8)
Alphaproteobacteria
Sphingomonadaceae
Sphingomonas sp. PAMC 26617
Shin and Park Unpubl., NCBI: ZP_10422865.1 Human
(24)
Rhodospirillaceae
Paracoccus
Paracoccus sulfuroxidans
(13)
Human
(4)
Rhodobacteraceae
Rhodobacter sphaeroides KD131
(23), NCBI: YP_002526021.1
NE a
(16)
Phyllobacteriaceae
Mesorhizobium loti MAFF303099
(14), NCBI: NP_103519.1
NE
(30, 31)
Methylocystis
Methylocystis sp. ATCC 49242
NCBI: ZP_08072865
NE
Prosthecomicrobium
Not reported in NCBI
NE
(46)
Hyphomicrobiaceae
Hyphomicrobium denitrificans ATCC
Lucas, Unpubl., NCBI: YP_003754526.1
NE
(7, 43)
51888
Devosia
Devosia subaequoris Does not hydrolyse
(48)
NE
(22)
cellulose
Blastochloris
NE
(12)
NE
Caulobacter
Caulobacter segnis ATCC 21756
Lucas et al. Unpubl., NCBI: YP_003594524.1 NE
(15)
——————————————————————————————————————————————————————————————
Table S1. Continued.
——————————————————————————————————————————————————————————————
Planctomycetes
Planctomycetaceae
Pirellula staleyi type strain (ATCC 27377) (5), NCBI: YP_003372351
NE
http://hamap.exp
asy.org/proteom
es/GEMAT.html
Rhodopirellula
Rhodopirellula baltica SH 1
(45), NCBI: NP_866594.1
NE
(44),
http://hamap.exp
asy.org/proteom
es/GEMAT.html
Gemmatimonadetes
Gemmatimonas
Gemmatimonas aurantiaca T-27 putative
Takasaki et al. Unpubl., NCBI:
NE
http://hamap.exp
glycosyltransferase
YP_002760378
asy.org/proteom
es/GEMAT.html
Firmicutes
Erysipelotrichaceae
Bacillales
Chloroflexi
Caldilinea
Bacteroidetes
Pedobacter
Flavobacteriaceae
Actinobacteria
Solirubrobacterales
Nitriliruptor
Coprobacillus sp. D7
Bacillus subtilis
Ward et al. Unpubl., GenBank: EEO32907.1
(18), GenBank: AFH66776.1
NE
NE
(20, 50)
Caldilinea aerophila (strain DSM 14535 /
JCM 11387 / NBRC 104270 / STL-6-O1)
glycosyl hydrolase 1 family
http://www.uniprot.org/uniprot/I0HYI5
NE
(41)
Pedobacter heparinus DSM 2366
Flavobacterium johnsoniae UW101
(11), GenBank: ACU02897.1
(27), NCBI: YP_001197264.1
NE
fish-pathogen
(48)
(32, 29)
Conexibacter woesei DSM 14684
(34), GenBank: ADB48595.1
NE
(35)
Nitriliruptor alkaliphilus does not grow on
(42)
NE
(42)
cellulose
Aeromicrobium
Aeromicrobium erythreum DSM 8599T
(2)
NE
(37, 36)
Mycobacterium
Mycobacterium sp. KMS
Copeland et al. Unpubl., NCBI: YP_941366.1 Human
(49)
Dietzia
Dietzia alimentaria 72
(17), NCBI: ZP_11234924.1
Human
(33, 19)
Ilumatobacter
NE
NE
(26)
——————————————————————————————————————————————————————————————
a
NE: No evidence was found in the literature.
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