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Download Supplementary Table 4. Affymetrix probes differentially expressed
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Supplementary Table 4. Affymetrix probes differentially expressed between EBER-positive CD20-negative post-transplant PBL (n = 3) and EBER-positive post-transplant DLBCL (n = 22) (False discovery rate < 0.001; p-value < 0.05; fold change 5) The positive and negative fold changes apply to PBL. variable Gene.Title Gene.Symbol Fold Change 228592_at membrane-spanning 4-domains, subfamily A, member 1 MS4A1 -266,649 217418_x_at membrane-spanning 4-domains, subfamily A, member 1 MS4A1 -87,0577 228599_at membrane-spanning 4-domains, subfamily A, member 1 MS4A1 -69,902 210356_x_at membrane-spanning 4-domains, subfamily A, member 1 MS4A1 -63,4024 221969_at paired box 5 PAX5 -59,3109 206337_at chemokine (C-C motif) receptor 7 CCR7 -36,6011 229437_at MIR155 host gene (non-protein coding) MIR155HG -33,1573 206398_s_at CD19 molecule CD19 -25,0873 219424_at Epstein-Barr virus induced 3 EBI3 -21,4379 236198_at --- --- -18,9778 237753_at --- --- -14,9893 44790_s_at chromosome 13 open reading frame 18 C13orf18 -14,9053 204563_at selectin L SELL -14,8811 206618_at interleukin 18 receptor 1 IL18R1 -14,0477 210538_s_at baculoviral IAP repeat-containing 3 BIRC3 -13,7425 202437_s_at cytochrome P450, family 1, subfamily B, polypeptide 1 CYP1B1 -13,4391 223395_at ABI family, member 3 (NESH) binding protein ABI3BP -13,4229 222774_s_at neuropilin (NRP) and tolloid (TLL)-like 2 NETO2 -12,9997 205681_at BCL2-related protein A1 BCL2A1 -12,9466 202436_s_at cytochrome P450, family 1, subfamily B, polypeptide 1 CYP1B1 -12,5315 212543_at absent in melanoma 1 AIM1 -11,7741 204959_at myeloid cell nuclear differentiation antigen MNDA -11,7033 236280_at --- --- -11,6705 230110_at mucolipin 2 MCOLN2 -10,9638 218888_s_at neuropilin (NRP) and tolloid (TLL)-like 2 NETO2 -10,7495 202643_s_at tumor necrosis factor, alpha-induced protein 3 TNFAIP3 -10,685 209723_at serpin peptidase inhibitor, clade B (ovalbumin), member 9 SERPINB9 -10,6244 1554519_at CD80 molecule CD80 -10,4249 231769_at F-box protein 6 FBXO6 -10,3496 1552807_a_at sialic acid binding Ig-like lectin 10 /// sialic acid binding Ig-like lectin 12 SIGLEC10 /// SIGLEC12 -10,3493 215933_s_at hematopoietically expressed homeobox HHEX -10,1414 221658_s_at interleukin 21 receptor IL21R -9,9921 219045_at ras homolog gene family, member F (in filopodia) RHOF -9,7272 221581_s_at linker for activation of T cells family, member 2 LAT2 -9,7225 226517_at branched chain amino-acid transaminase 1, cytosolic BCAT1 -9,5309 244050_at protein tyrosine phosphatase-like A domain containing 2 PTPLAD2 -8,9929 226834_at --- --- -8,9913 205081_at cysteine-rich protein 1 (intestinal) CRIP1 -8,8123 205599_at TNF receptor-associated factor 1 TRAF1 -8,6923 214615_at purinergic receptor P2Y, G-protein coupled, 10 P2RY10 -8,559 1554508_at phosphoinositide-3-kinase adaptor protein 1 PIK3AP1 -8,5165 209795_at CD69 molecule CD69 -8,4608 202644_s_at tumor necrosis factor, alpha-induced protein 3 TNFAIP3 -8,4524 229450_at interferon-induced protein with tetratricopeptide repeats 3 IFIT3 -8,3887 238695_s_at RAB39B, member RAS oncogene family RAB39B -8,2634 226063_at vav 2 guanine nucleotide exchange factor VAV2 -8,2264 219471_at chromosome 13 open reading frame 18 C13orf18 -8,1952 229597_s_at WDFY family member 4 WDFY4 -8,1434 225285_at branched chain amino-acid transaminase 1, cytosolic BCAT1 -8,1171 205859_at lymphocyte antigen 86 LY86 -8,0956 1552806_a_at sialic acid binding Ig-like lectin 10 /// sialic acid binding Ig-like lectin 12 SIGLEC10 /// SIGLEC12 -8,0429 204057_at interferon regulatory factor 8 IRF8 -8,04 203471_s_at pleckstrin PLEK -8,0223 209949_at neutrophil cytosolic factor 2 NCF2 -7,8845 1553856_s_at purinergic receptor P2Y, G-protein coupled, 10 P2RY10 -7,7401 205668_at lymphocyte antigen 75 LY75 -7,7209 227799_at myosin IG MYO1G -7,7178 202295_s_at cathepsin H CTSH -7,714 228186_s_at R-spondin 3 homolog (Xenopus laevis) RSPO3 -7,6981 235085_at homolog of rat pragma of Rnd2 SGK223 -7,6522 218986_s_at DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 DDX60 -7,6502 230075_at RAB39B, member RAS oncogene family RAB39B -7,6474 217388_s_at kynureninase (L-kynurenine hydrolase) KYNU -7,5993 209198_s_at synaptotagmin XI SYT11 -7,4128 206693_at interleukin 7 IL7 -7,4103 201259_s_at synaptophysin-like 1 SYPL1 -7,3785 219279_at dedicator of cytokinesis 10 DOCK10 -7,2966 228812_at --- --- -7,2922 203685_at B-cell CLL/lymphoma 2 BCL2 -7,2858 212589_at related RAS viral (r-ras) oncogene homolog 2 RRAS2 203470_s_at pleckstrin PLEK -7,1028 235242_at --- --- -7,0781 1557411_s_at solute carrier family 25, member 43 SLC25A43 -7,0671 226748_at LysM, putative peptidoglycan-binding, domain containing 2 LYSMD2 -7,0247 228152_s_at DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like DDX60L -6,9671 206036_s_at v-rel reticuloendotheliosis viral oncogene homolog (avian) REL -6,9112 226459_at phosphoinositide-3-kinase adaptor protein 1 PIK3AP1 -6,9076 218223_s_at pleckstrin homology domain containing, family O member 1 PLEKHO1 -6,8729 229041_s_at --- --- -6,7949 235593_at zinc finger E-box binding homeobox 2 ZEB2 -6,6385 239486_at --- --- -6,6294 228805_at chromosome 5 open reading frame 25 C5orf25 -6,6269 241871_at calcium/calmodulin-dependent protein kinase IV CAMK4 -6,5919 201951_at activated leukocyte cell adhesion molecule ALCAM -6,5191 -7,272 219062_s_at zinc finger, CCHC domain containing 2 ZCCHC2 -6,4579 218898_at family with sequence similarity 57, member A FAM57A -6,3981 243601_at hypothetical protein LOC285957 LOC285957 -6,3754 209307_at SWAP switching B-cell complex 70kDa subunit SWAP70 227983_at Rab interacting lysosomal protein-like 2 RILPL2 -6,3318 212646_at raftlin, lipid raft linker 1 RFTN1 -6,3301 244286_at --- --- -6,2936 230389_at formin binding protein 1 FNBP1 -6,2598 50221_at transcription factor EB TFEB -6,2488 212561_at DENN/MADD domain containing 5A DENND5A -6,2113 242814_at serpin peptidase inhibitor, clade B (ovalbumin), member 9 SERPINB9 -6,2096 221912_s_at coiled-coil domain containing 28B CCDC28B -6,2033 1555465_at mucolipin 2 MCOLN2 -6,1734 200934_at DEK oncogene DEK -6,1584 219971_at interleukin 21 receptor IL21R -6,1499 222816_s_at ZCCHC2 HLA-DQA1 /// HLA-DQA2 /// LOC100294224 /// LOC100294317 -6,0578 212671_s_at zinc finger, CCHC domain containing 2 major histocompatibility complex, class II, DQ alpha 1 /// major histocompatibility complex, class II, DQ alpha 2 /// similar to MHC class II antigen /// similar to MHC HLA-DQ alpha 243931_at --- --- -6,0161 212288_at formin binding protein 1 FNBP1 -5,9539 226756_at --- 229937_x_at --Leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 1 LILRB1 -5,8334 228869_at sorting nexin 20 SNX20 -5,7917 205099_s_at chemokine (C-C motif) receptor 1 CCR1 -5,7677 201260_s_at synaptophysin-like 1 SYPL1 -5,7642 218400_at 2'-5'-oligoadenylate synthetase 3, 100kDa OAS3 -5,764 226550_at --- --- -5,7526 1555630_a_at RAB34, member RAS oncogene family RAB34 -5,7426 1558105_a_at --- --- -5,7209 213293_s_at tripartite motif-containing 22 TRIM22 -5,6541 31845_at E74-like factor 4 (ets domain transcription factor) ELF4 -5,5027 228771_at adrenergic, beta, receptor kinase 2 ADRBK2 -5,4859 209306_s_at SWAP switching B-cell complex 70kDa subunit -5,4814 221044_s_at tripartite motif-containing 34 /// TRIM6-TRIM34 readthrough SWAP70 TRIM34 /// TRIM6TRIM34 227609_at epithelial stromal interaction 1 (breast) EPSTI1 -5,4595 211962_s_at zinc finger protein 36, C3H type-like 1 ZFP36L1 -5,4356 203185_at Ras association (RalGDS/AF-6) domain family member 2 RASSF2 -5,4028 226909_at zinc finger protein 518B ZNF518B -5,3762 201601_x_at interferon induced transmembrane protein 1 (9-27) IFITM1 -5,3388 221011_s_at limb bud and heart development homolog (mouse) LBH -5,3252 210663_s_at kynureninase (L-kynurenine hydrolase) KYNU -5,3066 216942_s_at CD58 molecule CD58 -5,3021 221268_s_at sphingosine-1-phosphate phosphatase 1 SGPP1 -5,2929 204923_at SAM and SH3 domain containing 3 SASH3 -5,2208 -6,348 -6,0327 -5,898 -5,473 1555355_a_at v-ets erythroblastosis virus E26 oncogene homolog 1 (avian) ETS1 -5,2063 205173_x_at CD58 molecule CD58 -5,205 204352_at TNF receptor-associated factor 5 TRAF5 -5,2044 209083_at coronin, actin binding protein, 1A CORO1A 205098_at chemokine (C-C motif) receptor 1 CCR1 -5,0992 213457_at malignant fibrous histiocytoma amplified sequence 1 MFHAS1 -5,0716 218729_at latexin LXN -5,0706 223027_at SNX9 -5,0637 201502_s_at sorting nexin 9 nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha NFKBIA -5,0547 228375_at immunoglobulin superfamily, member 11 IGSF11 5,0318 207084_at POU class 3 homeobox 2 POU3F2 5,0451 1562153_a_at Pvt1 oncogene (non-protein coding) PVT1 5,1091 235775_at TMTC2 5,1255 206805_at transmembrane and tetratricopeptide repeat containing 2 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A SEMA3A 5,1754 206626_x_at synovial sarcoma, X breakpoint 1 SSX1 5,3547 218529_at CD320 molecule CD320 5,4421 239858_at --- --- 5,5367 1560503_a_at hypothetical protein LOC100130275 LOC100130275 5,5629 202063_s_at sel-1 suppressor of lin-12-like (C. elegans) SEL1L 5,7855 242909_at --- --- 5,8095 207213_s_at ubiquitin specific peptidase 2 USP2 5,8502 1557755_at chromosome 14 open reading frame 145 C14orf145 6,0559 231223_at CUB and Sushi multiple domains 1 CSMD1 6,0821 228645_at small nucleolar RNA host gene 9 (non-protein coding) SNHG9 6,3219 205123_s_at transmembrane protein with EGF-like and two follistatin-like domains 1 TMEFF1 6,9368 214608_s_at eyes absent homolog 1 (Drosophila) EYA1 6,9641 242455_at POU class 3 homeobox 2 POU3F2 7,0157 1557765_at hypothetical protein LOC643401 LOC643401 7,2458 231131_at family with sequence similarity 133, member A FAM133A 7,3866 210055_at thyroid stimulating hormone receptor TSHR 7,5319 204393_s_at acid phosphatase, prostate ACPP 8,1039 209909_s_at transforming growth factor, beta 2 TGFB2 8,161 205122_at transmembrane protein with EGF-like and two follistatin-like domains 1 TMEFF1 8,3164 208586_s_at synovial sarcoma, X breakpoint 4 /// synovial sarcoma, X breakpoint 4B SSX4 /// SSX4B 9,4287 235902_at --- --- 9,4304 219959_at molybdenum cofactor sulfurase MOCOS 1557756_a_at chromosome 14 open reading frame 145 C14orf145 9,9579 1568597_at hypothetical LOC646762 LOC646762 10,1498 226225_at mutated in colorectal cancers MCC 10,1625 240687_at PAS domain containing 1 PASD1 10,3369 1569469_a_at LIM homeobox 8 LHX8 11,1669 239481_at family with sequence similarity 133, member A FAM133A 11,5569 215443_at thyroid stimulating hormone receptor TSHR 11,7577 215442_s_at thyroid stimulating hormone receptor TSHR 12,2902 -5,162 9,778 217339_x_at cancer/testis antigen 1A /// cancer/testis antigen 1B CTAG1A /// CTAG1B 209695_at protein tyrosine phosphatase type IVA, member 3 PTP4A3 14,3486 12,31 206574_s_at protein tyrosine phosphatase type IVA, member 3 PTP4A3 14,3914 210546_x_at cancer/testis antigen 1A /// cancer/testis antigen 1B CTAG1A /// CTAG1B 210394_x_at synovial sarcoma, X breakpoint 4 /// synovial sarcoma, X breakpoint 4B SSX4 /// SSX4B 17,1432 211425_x_at synovial sarcoma, X breakpoint 4 /// synovial sarcoma, X breakpoint 4B SSX4 /// SSX4B 17,6293 207337_at cancer/testis antigen 2 CTAG2 18,9323 220668_s_at DNA (cytosine-5-)-methyltransferase 3 beta DNMT3B 19,0317 207325_x_at melanoma antigen family A, 1 (directs expression of antigen MZ2-E) MAGEA1 23,0903 201287_s_at syndecan 1 SDC1 23,2776 220994_s_at syntaxin binding protein 6 (amisyn) STXBP6 23,8874 205054_at nebulin NEB 25,2292 211674_x_at cancer/testis antigen 1A /// cancer/testis antigen 1B CTAG1A /// CTAG1B 27,0973 201286_at syndecan 1 SDC1 27,1617 226462_at syntaxin binding protein 6 (amisyn) STXBP6 29,2248 238914_at deleted in colorectal carcinoma DCC 35,7494 230560_at syntaxin binding protein 6 (amisyn) STXBP6 41,0829 229349_at lin-28 homolog B (C. elegans) LIN28B 71,8974 220129_at spermatogenesis and oogenesis specific basic helix-loop-helix 2 SOHLH2 84,7844 15,9
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