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Lab 1: Microscope Microscope o Micrometer: 10-6 m o Compound microscope Eyepieces Binocular head Dioptry adjustment collar Mechanical stage Stage movement knobs Body tube Objective Scanning objective (3.2x) Oil immersion (100x) Magnification Coarse and fine focus knobs Revolving nosepiece Condenser Front lens and lever Main lens Condenser diaphragm Centering screws Focus knob Illuminator Base o Wet mount o Optical section o Unicellular vs multicellular o Organel->cell->tissue->organ->organism o Cell Chloroplast Nucleus Nucleolus Cytoplasm Cytoplasmic streaming o Hystological section Cross section Longitudinal section o Selective staining Controls o Positive control False negatives Sufficient o Negative control False positives Sufficient and necessary Lab 2: Bacteria Pathogen Medium Pure culture Binomial nomenclature o Genus o Species Colony characterization o Shape o Convex o Size o Color o Texture Cell characterization o Selective staining o Shape Cocci Baccilius Spirals Growth o Inoculum o Doubling time= generation time o Phases Lag Exponential Lab 3: Cellular physiology and membrane transport Differential permeability o Betacyanin in beets and alcohol o Ports Size Polarity o Solubility Transport mechanism o Passive Types Brownian movement carmine Diffusion Influences Temperature Osmosis Hypotonic Hypertonic Isotonic Osmometer o Active Influences Metabolism o Energy available o Temperature Lab 4 Macromolecule characterization o Molecules Monosacharids- monomers Glucose o Aldehyde group Fructose o Ketone Disaccharides-polymers Sucrose o Glucose-fructose Maltose o Glucose-glucose Lactose o Galactose-glucose Polysaccharids-polymers Starch o Glucose o Alpha bonds Cellulose o Glucose o Beta bonds o Tests Benedict’s Positive: brick red Negative: green Iodine Metabolism Enzymes o Examples Amylase Indicator: Iodine (color loss with reaction) Substrate: starch Product: glucose Succinate dehydrogenase Citric acid cycle Indicator: DCIP (color loss from blue with reaction, requires absence of oxygen) Substrate: Succinate Product: Fumerate Competitive inhibitor: malonate Substrate Active site Specificity Catalysis Inhibitor Competitive inhibitor Spectrophotometry o Transmittance o Absorbance Lab 5: Respiration Influence o Temperature o Requirements for enzyme activity ATP o Phosphate bond Aerobic respiration o Green pea o Sugar+oxygen=carbon dioxide+water+energy o Respirometer o Thermobarometer o RQ: respiratory quotient Varies with substrate Anaerobic respiration o Yeast (requires magnesium) o Fermentation o Enzyme specificity (hexose-glucose for yeast) Lab 6: Photosynthesis Pigments o Chlorophylls A B o Accessory pigments Carotenoids Xanthophylls o Chromatography Paper chromatography o Fluorescence Carbon dioxide+water+light=sugar+water+oxygen o Sugar can transported o Sugar can be converted to starch (which cannot be transported) Influences o Light color o Temperature o o o o o Lab 7: Bacteriophage and radiation Bacteriophage o Plaques o E. coli and T4 o Burst size o Free parental phage o Progeny phage Radiation o UV o Serratia marcescens o Inactivation curve Flies o Females Pointed abdomen o Males Rounded abdomen Sex combs o Wild type Brick red eyes Gray body Wings extending significantly beyond posterior end of abdomen Lab 8 Cell cycle o Interphase Growth phase Synthesis phase Sister chromatid production Second growth phase Tubulin synthesis o Mitosis In plants Prophase o Centromere o Kinetochore o Spindle apparatus Methaphase o Equator Anaphase Telophase Cytokinesis o Phragmoplast o Cell plate o Middle lamella In animals Centrioles during interphase o Spindle fibrils o Astral fibrils Cytokinesis by cleavage furrow o No cell plate o Meiosis Chromosome number is reduced by half Doubline happens at gametic fusion/fertilization Homologous chromosome pairing Meiosis Reduction division o Prophase I synapsis tetrad sister chromatids chiasmata crossover/recombination o Metaphase I Undivided centromeres Independent chromosome arrangement o Anaphase I Seperation of tetrads Reduction o Telophase I Haploid (half ploidy) Interkinesis Equational division o Prophase II o Metaphase II o Anaphase II Division of centromeres holding sister chromatids o Telophase II Genetic nomenclature o Allelic pair: genes/alleles o Homologous pair: chromosomes o Allosomes o Autosomes o Homozygous o Heterozygous o Hemizygous (on allosome) o Haploid o Phenotype o Genotype o Mutant o o o o o o o o o o o o o o Lab 9 Wild-type Dominant Recessive Link Gameters Mendelism Monohybrid cross Mendel’s laws of inheritance Segregation Independent assortment linkage Trait Genetic cross F1/ first filial generation Parental generation Punnet square Sex linked inheritance Phenylthiocarbamide (PTC) tasters Sex linked colorblindness Progeny testing Test cross Polytene chromosomes o Banded, puffs, centromeres/chromocentres Lab 10 Genetic code o ORF o Gene o Methionine start codon o Stop codon o BLAST o Phylogenetic tree o Reading frame Recombination o Trans o Cis o Map unit o Locus o Parental type o Recombinant o Double recombinant Interference Lab 11 Plasmid Southern blot Agarose gell Loading buffer o Bromophenol blue o Glycerol Ethidium bromide/cyber safe Restriction endonuclease Restriction map Molecular weight ladder