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Supplemental Table 2. Proteins up- regulated in response to proteasome inhibition (only proteins with more than 3 peptides identified are reported) 3-ketoacyl-CoA thiolase B NP_666342 40S ribosomal protein S26. P62855 60S acidic ribosomal protein P0 (L10E) P14869 5',3'-nucleotidase, cytosolic NP_056622 acetyl-Coenzyme A acyltransferase 1 NP_570934 acidic ribosomal phosphoprotein P0 NP_031501 actin# AAA37164 ADP-ribosylation factor 1# NP_031502 ADP-ribosylation factor 3 NP_031504 aldehyde dehydrogenase 2, mitochondrial NP_033786 aminolevulinate, delta-, dehydratase NP_032551 aminopeptidase AAD43215 annexin A2 NP_031611 ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit NP_058054 ATP-binding cassette, subfamily E, member 1 NP_056566 BC031593 protein AAH19155 calpain, small subunit 1 NP_033925 calponin 3, acidic NP_082320 calreticulin NP_031617 capping protein (actin filament) muscle Z-line, alpha 2 NP_031630 carbonyl reductase 1 NP_031646 casein kinase II, alpha 2, polypeptide NP_034104 caseinolytic protease, ATP-dependent, proteolytic subunit homolog NP_059089 CNDP dipeptidase 2 (metallopeptidase M20 family) NP_075638 coactosin-like 1 NP_082347 coding region determinant binding protein AAC72743.1 crystallin, alpha B NP_034094 cytochrome c oxidase, subunit Va NP_031773 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 NP_031866 dihydrolipoamide S-succinyltransferase (E2 component of 2-oxoglutarate complex) NP_084501 dihydropyrimidinase-like 2 NP_034085 double cortin and calcium/calmodulindependent protein kinaselike 1 NP_064362 doublecortin NP_034155 EH-domain containing 2 NP_694708 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R) NP_034615 emerin NP_031953 endoplasmic reticulum transmembrane protein precursor. AAA37573 enolase 1, alpha non-neuron NP_075608 eukaryotic translation elongation factor 1 alpha 1 NP_034236 eukaryotic translation elongation factor 1 alpha 2 NP_031932 eukaryotic translation initiation factor 3, subunit 7 (zeta) NP_061219 eukaryotic translation termination factor 1 NP_659115 ferritin light chain 1 NP_034370 ferritin light chain 2 NP_032075 fibrillarin NP_032017 fibronectin 1 NP_034363 gelsolin NP_666232 Glial fibrillary acidic protein, astrocyte (GFAP). P03995 Glucosidase 2 beta subunit precursor (Glucosidase II beta subunit) (Protein kinase C substrate, 60.1 kDa protein, heavy chain) (PKCSH) (80K-H protein). O08795 glutamate oxaloacetate transaminase 2, mitochondrial glyceraldehyde-3-phosphate NP_034455 dehydrogenase# NP_032110 growth suppressor 1L AAF04806.1 H2A histone family, member X NP_034566 H2A histone family, member Z NP_058030 heat shock 70kD protein 5 (glucose-regulated protein) NP_071705 heat shock protein 1 NP_038588 heat shock protein 1, alpha NP_034610 heat shock protein 1, beta NP_032328 heat shock protein 105 NP_038587 heat shock protein 4 NP_032326 heat shock 70kD protein 5 AAH50927.1| heat shock protein 8# NP_112442 hematopoietic lineage switch 2 AAC17945 heterogeneous nuclear ribonucleoprotein A1 isoform b NP_001034218 heterogeneous nuclear ribonucleoprotein A2/B1 isoform 2 NP_872591 heterogeneous nuclear ribonucleoprotein C NP_058580 heterogeneous nuclear ribonucleoprotein H1 NP_067485 heterogeneous nuclear ribonucleoprotein H2 NP_063921 heterogeneous nuclear ribonucleoprotein K NP_079555 heterogeneous nuclear ribonucleoprotein L NP_796275 hexosaminidase A NP_034551 H2A histone family, member X NP_034566 H2B histone family, member S, Q8C622 His2b protein. Q64477 Hist1h2bp protein (OTTMUSP00000000463). Q6P8V8 histone 1, H4c NP_835515 Histone 2b protein Q64475 histone 3, H2bb NP_996765 Histone H2B F P10853 Histone H4. NP_835515 Histone protein Hist1h2bk (OTTMUSP00000000486). Q8CGP1 HLA-B-associated transcript 1A NP_062667 hypothetical protein LOC213673 NP_694757 hypothetical protein LOC66508 NP_079881 hypothetical protein LOC68303 NP_080943 hypothetical protein LOC77055 NP_001028349 hypothetical protein LOC98238 NP_598568 immunoglobulin (CD79A) binding protein 1b NP_056592 insulin-like growth factor 2 mRNA binding protein 2 NP_898850 insulin-like growth factor 2, binding protein 1 NP_034081 insulin-like growth factor 2, binding protein 3 NP_076159 junction plakoglobin NP_034723 lamin A isoform A NP_001002011 lectin, galactose binding, soluble 1 NP_032521 leprecan 1 isoform 1 NP_062756 leprecan 1 isoform 2 NP_062757 leukotriene B4 12-hydroxydehydrogenase NP_080244 mannose-6-phosphate receptor binding protein 1 NP_080112 MO25 protein NP_598542 myosin light chain, regulatory B-like NP_080340 myosin regulatory light chain-like NP_075891 myosin, heavy polypeptide 7, cardiac muscle, beta NP_542766 myosin, heavy polypeptide 9, non-muscle isoform 1# NP_071855 nexilin NP_955759 NS1-associated protein 1 isoform 2 NP_062770 nucleolar protein 5A NP_077155 nucleophosmin 1 NP_032748 nucleoside-diphosphate kinase 1# NP_032730 peptide-O-fucosyltransferase 2 Q8VHI3 peptidylprolyl isomerase A NP_032933 peptidylprolyl isomerase B NP_035279 peroxiredoxin 4 NP_058044 peroxiredoxin 5 precursor NP_036151 peroxiredoxin 6 NP_031479 phosphatidylinositol-binding clathrin assembly protein NP_666306 phosphoserine aminotransferase 1 NP_803155 PREDICTED: heterogeneous nuclear ribonucleoprotein A0 isoform 2 XP_896535 PREDICTED: similar to Spectrin alpha chain, brain (Spectrin, non-erythroid alpha chain) (Alpha-II spectrin) (Fodrin alpha chain) isoform 6# XP_992016 Programmed cell death protein 8, mitochondrial precursor (Apoptosis-inducing factor) Q9Z0X1 protease, serine, 1 NP_444473 proteasome# 26S non-ATPase subunit 5 NP_542121 protein disulfide isomerase associated 3 NP_031978 protein disulfide isomerase-associated 6 NP_082235 protein kinase C and casein kinase substrate in neurons 3 NP_083009 protein O-fucosyltransferase 2 NP_084538 protein phosphatase 2A, regulatory subunit B, delta isoform NP_080667 pyruvate dehydrogenase# complex, component X NP_780303 ras-GTPase-activating protein SH3-domain binding protein NP_038744 RAS-related protein-1a NP_663516 Rho GDP dissociation inhibitor (GDI) alpha NP_598557 ribosomal protein L22 NP_033105 ribosomal protein L23a NP_997406 ribosomal protein L24 NP_077180 ribosomal protein L30 NP_033109 ribosomal protein L31 NP_444487 ribosomal protein S14 NP_065625 ribosomal protein S16 NP_038675 ribosomal protein S18 NP_035426 ribosomal protein S19 NP_075622 ribosomal protein S20 NP_080423 ribosomal protein S23 NP_077137 ribosomal protein S25 NP_077228 ribosomal protein S8 NP_033124 RNA binding motif protein 3 NP_058089 selenoprotein NP_444332 septin# NP_149156 8 serine/threonine kinase receptor associated protein NP_035629 SET translocation NP_076360 SH3-binding domain glutamic acid-rich protein like NP_064373 SH3-domain GRB2-like endophilin B2 NP_647463 sideroflexin 3 NP_444427 signal recognition particle 14 NP_033299 similar to glyceraldehyde-3-phosphate dehydrogenase# NP_032110 Similar to H2B histone family, member J. Q8VEE3 SKI interacting protein NP_079783 small nuclear ribonucleoprotein D2 NP_081219 stomatin-like protein 2 NP_075720 stress-induced phosphoprotein 1 NP_058017 superoxide dismutase 1, soluble NP_035564 suppression of tumorigenicity 13 NP_598487 thioredoxin 1 NP_035790 transaminase A P05202 transketolase NP_033414 transmembrane emp24 domain-containing protein 10 NP_081051 triosephosphate isomerase 1 NP_033441 tropomyosin 1, alpha NP_077745 tropomyosin 2, beta NP_033442 tubulin, alpha 1 NP_035783 tubulin, alpha 2 NP_035784 tubulin, alpha 6 NP_033474 tubulin, beta 4 NP_033477 tubulin, beta 5 NP_035785 tubulin, beta 2c AAH05547 ubiquitin B NP_035794 ubiquitin-activating enzyme E1, Chr X NP_033483 v-crk sarcoma virus CT10 oncogene homolog NP_598417 v-crk sarcoma virus CT10 oncogene homolog (avian)-like NP_031790 vimentin# NP_035831 voltage-dependent anion channel 1 NP_035824 WD repeat domain 12 NP_067287 #proteins from the Supplemental Table 2 that also appear in Table 1 in the main text
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