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Molecular Genetics Study Guide 1. Structure of DNA / Nucleic Acids: P. 52, 53, 210 - 216 - compare and contrast composition, structure and function of DNA and RNA - role of Watson and Crick, Franklin, Chargaff terms: antiparallel purines / pyrimidines phosphodiester and glycosyl bonds 5 prime and 3 prime ends nucleotides Questions: p.216 #1-3,5,6,7 2. DNA replication: P. 217 - 223 - describe process of duplication - describe role of specific enzymes like DNA helicase, DNA polymerase, gyrase, primase terms: semiconservative leading and lagging strands RNA primers replication fork single-stranded binding proteins Okazaki fragments Questions: p.223 #1,2,4-7 Review p.229 (all except #7) and p.230 (all except 19) 3. Protein Synthesis: P. 237 - 244, 250 - 254 - meaning of central dogma - events in transcription: initiation, elongation, termination - post-transcriptional modifications terms: introns and exons spliceosomes template and primary transcript termination sequence promoter site role of RNA polymerase 5 prime guanine cap, poly A tail transcription bubble - events in translation process: initiation, elongation, termination P. 250 - 254 - role of tRNA, mRNA, ribosomes, RNA polymerase terms: codons and anticodons start codons and stop codons initiation sites and termination sites, release factors A site, P site, E site promoter regions - TATA and CAAT box release factors nonsense codons Questions: p. 236 #1 p.241 #1-11,13 p.249 #1-8 p.254 #1-4,6-9 4. Regulation of Protein Synthesis: P. 321, 255 - 258 - role of repressor and activator proteins, RNA polymerase - regulatory and operator and promoter sites - structure and function of an operon - Lac and Trp operons (negative and positive control) - categories of gene transcription: constitutively expressed genes (house keeping), inducible, repressible Questions: p.258 #1-5 5. Mutations: P. 259 - 263 - spontaneous and induced mutations - types of mutations: silent, point, missense, nonsense, frameshift, chromosomal, translocation (transposons), inversions, dimers - categories and effects of mutagens: chemical, ionizing, UV radiation - repair mechanisms - oncogenes Questions: p.263 #1-9 6. Gene Organization and Chromosome structure: P. 266 - 267 - histones, nucleosomes, supercoils - variable number tandem repeats (VNTRs) - telomeres, centromeres, pseudogenes - Sines and Lines Questions: p.267 #1,3-5 Review p.274-275 #1-7,10,11,14,15,18,21 7. Biotechnology: P. 276 - 291, 298 - 309 - definition of biotechnology, main areas of research - definition / application of recombinant DNA - restriction endonucleases, methylases, DNA ligase, plasmids, cloning as tools for biotechnology - recognition sites (palindromic sequences) - sticky and blunt ends - competency, transformation - process of gel electrophoresis - technique and applications - polymerase chain reaction (purpose and how it works) - restriction fragment length polymorphism, southern blotting (purpose and application) - DNA sequencing with Sanger dideoxy method (purpose and application) - Human Genome Project - medical applications of biotechnology - agricultural and forensic applications Questions: p. 281 #1-3,5 p.282 #6,9,10 p.284 #11,15 p.287 #16,17 p.289 #20,21 Review p.291 #1,2,3a,5,7-9,12a,14 p.295 #1,3 p.298 #1,3 p.300 #7,9,11,13,14 Review p.319 #1-7,9-11,13,14 p.320 #1,3,4,6-8,10,13,14,20,23,27,28 p.309 #2,8