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Supplemental Table S2. Comparison of the RpoS regulon (Saint-Ruf et al, 2004) with the clusters of te HU regulon(1). Gene htgA htpX ibpB ibpA groES hslV oxyR sodA soxR yfiA rpoH ydcH dinJ dinG nfo sbcB xseB recB ung holC fis rpoA rpoB rpoC sucA acnB acnA gltA sucB fumC mdh Blattner b0012 b1829 b3686 b3687 b4142 b3932 b3961 b3908 b4063 b2597 b3461 b1426 b0226 b0799 b2159 b2011 b0422 b2820 b2580 b4259 b3261 b3295 b3987 b3988 b0726 b0118 b1276 b0720 b0727 b1611 b3236 Function Heat-shock protein Heat-shock protein Heat-shock protein Heat-shock protein Heat-shock protein Heat-shock protein H2O2-inducible genes activator Manganese superoxide dismutase Regulatory protein of SoxRS regulon Ribosome binding protein, H2O2 inducible RNA polymerase sigma-32 subunit Unknown, H2O2 inducible Damage-inducible protein J DNA-damage-inducible protein G Endonuclease IV Exodeoxyribonuclease I Exodeoxyribonuclease small subunit Exonuclease V subunit Uracil-DNA glycosylase DNA polymerase III, xhi-subunit Factor for inversion stimulation RNA polymerase, alpha-subunit RNA polymerase, beta-subunit RNA polymerase, beta prime-subunit 2-Oxoglutarate dehydrogenase Aconitate hydratase 2 Citrate hydro-lyase 1 Citrate synthase Dihydrolipoamide succinyltransferase Fumarate hydratase class II Malate dehydrogenase Class Adaptations: atypical conditions Adaptations: atypical conditions Adaptations: atypical conditions Adaptations: atypical conditions Adaptations: atypical conditions Adaptations: atypical conditions Adaptations: atypical conditions Adaptations: atypical conditions Adaptations: atypical conditions Adaptations: atypical conditions Adaptations: atypical conditions Adaptations: atypical conditions DNA repair DNA repair DNA repair DNA repair DNA repair DNA repair DNA repair Replication-transcription Replication-transcription Replication-transcription Replication-transcription Replication-transcription TCA cycle TCA cycle TCA cycle TCA cycle TCA cycle TCA cycle TCA cycle Reg.(1) [Cluster1] [Cluster5] [Cluster5] [Cluster5] [Cluster5] [Cluster6] [Cluster9] [Cluster8] [Cluster5] [Cluster5] [Cluster5] [Cluster3] [Cluster9] sdhC sdhD sdhA sdhB sucD sucC ompF pspA pspB pspC pspD rpsC rpsE rpsG rpsH rpsN rpsP rpsS rplA rplB rplC rplF rplJ rplK rplL rplO rplP rplS rplW rplX rplY rpmC prmA b0721 b0722 b0723 b0724 b0729 b0728 b0929 b1304 b1305 b1306 b1307 b3314 b3303 b3341 b3306 b3307 b2609 b3316 b3984 b3317 b3320 b3305 b3985 b3983 b3986 b3301 b3313 b2606 b3318 b3309 b2185 b3312 b3259 Succinate dehydrogenase Succinate dehydrogenase Succinate dehydrogenase flavoprotein Succinate dehydrogenase iron-sulfur protein Succinyl-coA synthetase alpha-chain Succinyl-coA synthetase beta-chain Outer membrane porin F Phage shock protein A Phage shock protein B Phage shock protein C Phage shock protein D 30S subunit protein S3 30S subunit protein S5 30S subunit protein S7 30S subunit protein S8 30S subunit protein S14 30S subunit protein S16 30S subunit protein S19 50S subunit protein L1 50S subunit protein L2 50S subunit protein L3 50S subunit protein L6 50S subunit protein L10 50S subunit protein L11 50S subunit protein L7/L12 50S subunit protein L15 50S subunit protein L16 50S subunit protein L19 50S subunit protein L23 50S subunit protein L24 50s subunit protein L25 50S subunit protein L29 Ribosomal protein L11 TCA cycle TCA cycle TCA cycle TCA cycle TCA cycle TCA cycle Outer membrane constituents Phage shock proteins Phage shock proteins Phage shock proteins Phage shock proteins Ribosomal proteins Ribosomal proteins Ribosomal proteins Ribosomal proteins Ribosomal proteins Ribosomal proteins Ribosomal proteins Ribosomal proteins Ribosomal proteins Ribosomal proteins Ribosomal proteins Ribosomal proteins Ribosomal proteins Ribosomal proteins Ribosomal proteins Ribosomal proteins Ribosomal proteins Ribosomal proteins Ribosomal proteins Ribosomal proteins Ribosomal proteins Ribosomal proteins [Cluster5] [Cluster5] [Cluster5] [Cluster5] [Cluster5] [Cluster5] [Cluster8] [Cluster8] [Cluster8] [Cluster8] [Cluster8] [Cluster8] [Cluster8] [Cluster8] [Cluster8] [Cluster8] [Cluster8] [Cluster8] [Cluster8] [Cluster8] [Cluster8] [Cluster8] [Cluster8] [Cluster8] [Cluster8] [Cluster8] [Cluster8] [Cluster8] -
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