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... much larger fragments of DNA than cosmids because they do not have packaging constraints • Phage P1 is a temperate bacteriophage which has been extensively used for genetic analysis of Escherichia coli because it can mediate generalized transduction. • Sternberg and co-workers have developed a P1 ve ...
the 3
the 3

... sequences of expressed genes. Comparing translated ESTs to annotated proteins – annotation of genes. ...
12.6 DNA Repair
12.6 DNA Repair

... energy to split pyrimidine dimers that kink the DNA. Pyrimidine dimers - bonds between C’s and/or T’s on the same strand.  Photolyases - enzymes that absorb light energy and use it to detect and bind to pyrimidine dimers, then break the extra bond.  Humans do not have this type of repair ...
DNA Recombination - Home - KSU Faculty Member websites
DNA Recombination - Home - KSU Faculty Member websites

... A nick is created in one strand by recBCD at a Chi sequence (GCTGGTGG), found every 5000 bp. Unwinding of DNA containing Chi sequence by recBCD allows binding of SSB and recA. recA promotes strand invasion into homologous DNA, displacing one strand. The displaced strand base-pairs with the single st ...
central dogma of molecular biology - Rose
central dogma of molecular biology - Rose

... the DNA is not always reflected in the mRNA and protein products. A gene is stretch of DNA containing both a template for RNA synthesis and sequences that allow the control of RNA production from the template region. However, in many cases, more than one protein can be produced from a DNA sequence, ...
Answer - CBSD.org
Answer - CBSD.org

... from forming in its blood. The DNA for this protein has been identified. An enzyme is used to cut and remove this section of flounder DNA that is then spliced into the DNA of a strawberry plant. As a result, the plant can now produce a protein that makes it more resistant to the damaging effects of ...
AP Biology Fall Semester Review
AP Biology Fall Semester Review

... e. DNA is cleaved by DNA polymerases and new nucleotides are assembled by ligases 36) Which of the following statements about DNA structure and replication in prokaryotes and cell organelles is correct? a. There is a single circular chromosome composed of DNA b. Chromosomes are wound around nucleoso ...
DNA Part II Lab
DNA Part II Lab

... healthcare industry? How does the manipulation of nucleic acids through genetic engineering alter the function of proteins and subsequent cellular processes? How does the sequence of nucleotides in DNA code for a specific sequence of amino acids in a protein? How does the specific sequence of amino ...
mb_ch10
mb_ch10

... – During translation, amino acids are assembled from information encoded in mRNA. – As the mRNA codons move through the ribosome, tRNAs add specific amino acids to the growing polypeptide chain. – The process continues until a stop codon is reached and the newly made protein is released. ...
CH 16-17: DNA, RNA & PROTEINS
CH 16-17: DNA, RNA & PROTEINS

... cooperation with other associated factors to help control gene expression. The number and type of SRF-associated factors determines which genes are expressed, where they are expressed, and when they are expressed. SRF and the other factors bind a DNA sequence known as the Serum Response Element (SRE ...
2008 exam with answers
2008 exam with answers

... but not without the 5’ to 3’ exo. Therefore it must be the 5’ to 3’ exo of enzyme X that is critical in DNA replication, and cannot be replaced by action of another enzyme. The function of 5’ to 3’ exo is to degrade the primer. The other activities of enzyme X could be used for elongation and proof ...
dna extraction - Medical Research Council
dna extraction - Medical Research Council

... DNA has two strands that wrap around each other in a shape called a double helix. To help DNA stick tightly together the bases match up in pairs. A always partners with T and C always joins up with G. The spiral shape lets DNA wind itself up tight and small. There is about 2 metres of DNA inside eac ...
Nucleotide
Nucleotide

... Implications of complementarity • One chain (strand) of DNA can serve as the template for synthesis of the complementary chain. • DNA replication: sequence of nucleotides in one chain of the duplex determines the sequence of nucleotides in the other chain. • Transcription: sequence of nucleotides i ...
Macromolecular Sequence Analysis Biological sequences
Macromolecular Sequence Analysis Biological sequences

... Turns, hairpins and loops A third type of secondary structure is the β turn. These are short regions where the protein chain takes a 180° change in direction, doubling back on itself. Such kind of hairpin turns are found for example between two adjacent β strands. The side chain R3 is usually H (gly ...
Interaction of a Nuclear Protein with 5` Flanking Region of
Interaction of a Nuclear Protein with 5` Flanking Region of

... with the protein/ DNA complexes reflects affinity, the fragment 8' appeared to have about 5-fold higher affinity for the factor. The addition of 25-fold molar excess of fragment 8' (Fig. 3, lane b2) competed as effectively as 125-fold molar excess of fragment 4 (Fig. 3, lane a3). The protein/ DNA co ...
Name  __________________________________ Period _________ Ms Foglia • AP Biology Date ______________________
Name __________________________________ Period _________ Ms Foglia • AP Biology Date ______________________

... These are needed to transcribe the gene properly when it is read. In addition, the HindIII & EcoR1 restriction enzyme cutting sites (sequences of bases) are marked in bold on the Jellyfish Glo gene DNA. The two restriction enzymes and their respective restriction sites are listed below. These enzyme ...
Cloning a Paper Plasmid
Cloning a Paper Plasmid

... These are needed to transcribe the gene properly when it is read. In addition, the HindIII & EcoR1 restriction enzyme cutting sites (sequences of bases) are marked in bold on the Jellyfish Glo gene DNA. The two restriction enzymes and their respective restriction sites are listed below. These enzyme ...
JGI - MaizeGDB
JGI - MaizeGDB

... mismatches or indels. Dense markers allows rapid development of multiple markers per gene. (Distribute via Gramene, NCBI) – Repetitive regions within B73 differ by ~90-99%, so identifying “allelic” repeats will be difficult given ~97% polymorphism (Attempt to localize “sisters” of unique reads based ...
Gene Mutations
Gene Mutations

... the DNA? What can happen during DNA replication? Recombination, chemically? • What is the difference between transitions and transversions? Effects on Protein/Effects on the Organism • What are the differences between a missense, nonsense, and frameshift mutation? (and how do they arise)? Why does a ...
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O - Faculty Web Pages
O - Faculty Web Pages

... the DNA? What can happen during DNA replication? Recombination, chemically? • What is the difference between transitions and transversions? Effects on Protein/Effects on the Organism • What are the differences between a missense, nonsense, and frameshift mutation? (and how do they arise)? Why does a ...
Chapter Outline
Chapter Outline

... 7. Introns give a cell the ability to decide which exons will go in a particular mRNA. 8. mRNA do not have all of the possible exons available from a DNA sequence. What is an exon in one mRNA could be an intron in another mRNA. This process is termed alternative mRNA splicing. 9. Some introns give r ...
Chem 317 Exam II
Chem 317 Exam II

... 2. A DNA polymerase is an enzyme that catalyzes the polymerization of DNA into a DNA strand using a DNA template. RNA polymerase, also known as DNA-dependent RNA polymerase, is an enzyme that produces RNA using a DNA template. DNA polymerase requires _____________, to initiate DNA synthesis from the ...
1 - Pdx
1 - Pdx

... 9.) What DNA sequences are important for factor independent transcriptional termination? How are these thought to promote transcription termination? (5pts) Termination by this mechanism relies upon an inverted repeat sequence that is followed by a stretch of UUUUs in the RNA transcript. Transcriptio ...
Unit 7: Heredity and Biotechnology
Unit 7: Heredity and Biotechnology

... 4. Once the desired gene fragment is separated from the others and then cut from the gel, it can be recombined with the DNA of the second organism to continue the genetic engineering. a. Often the gene is to be moved to bacteria, so it can be reconnected with a small loop of bacterial DNA called a ...
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Nucleosome



A nucleosome is a basic unit of DNA packaging in eukaryotes, consisting of a segment of DNA wound in sequence around eight histone protein cores. This structure is often compared to thread wrapped around a spool.Nucleosomes form the fundamental repeating units of eukaryotic chromatin, which is used to pack the large eukaryotic genomes into the nucleus while still ensuring appropriate access to it (in mammalian cells approximately 2 m of linear DNA have to be packed into a nucleus of roughly 10 µm diameter). Nucleosomes are folded through a series of successively higher order structures to eventually form a chromosome; this both compacts DNA and creates an added layer of regulatory control, which ensures correct gene expression. Nucleosomes are thought to carry epigenetically inherited information in the form of covalent modifications of their core histones.Nucleosomes were observed as particles in the electron microscope by Don and Ada Olins and their existence and structure (as histone octamers surrounded by approximately 200 base pairs of DNA) were proposed by Roger Kornberg. The role of the nucleosome as a general gene repressor was demonstrated by Lorch et al. in vitro and by Han and Grunstein in vivo.The nucleosome core particle consists of approximately 147 base pairs of DNA wrapped in 1.67 left-handed superhelical turns around a histone octamer consisting of 2 copies each of the core histones H2A, H2B, H3, and H4. Core particles are connected by stretches of ""linker DNA"", which can be up to about 80 bp long. Technically, a nucleosome is defined as the core particle plus one of these linker regions; however the word is often synonymous with the core particle. Genome-wide nucleosome positioning maps are now available for many model organisms including mouse liver and brain.Linker histones such as H1 and its isoforms are involved in chromatin compaction and sit at the base of the nucleosome near the DNA entry and exit binding to the linker region of the DNA. Non-condensed nucleosomes without the linker histone resemble ""beads on a string of DNA"" under an electron microscope.In contrast to most eukaryotic cells, mature sperm cells largely use protamines to package their genomic DNA, most likely to achieve an even higher packaging ratio. Histone equivalents and a simplified chromatin structure have also been found in Archea, suggesting that eukaryotes are not the only organisms that use nucleosomes.
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