Automatically Generating Gene Summaries from Biomedical
... gene name spelling. The following variations are identified and addressed in our system: (1) There are various ways to separate name constituents: they can be contiguous or separated by various separators such as white spaces, hyphens, slashes and brackets. (2) Gene names can be spelled in upper or ...
... gene name spelling. The following variations are identified and addressed in our system: (1) There are various ways to separate name constituents: they can be contiguous or separated by various separators such as white spaces, hyphens, slashes and brackets. (2) Gene names can be spelled in upper or ...
Bacteria Transformation
... Dr. Ross took Irene’s blood to test for her blood sugar. The results of the test indicated that she was a diabetic. When the doctor shared the results, Irene broke into tears. The combination of her sudden poor health and the news of her diabetes was too much for her to handle. “I don’t understand. ...
... Dr. Ross took Irene’s blood to test for her blood sugar. The results of the test indicated that she was a diabetic. When the doctor shared the results, Irene broke into tears. The combination of her sudden poor health and the news of her diabetes was too much for her to handle. “I don’t understand. ...
Structural analysis of both products of a reciprocal translocation
... rearranged fragments In BL22 genomic DNA comigrates with the 748 bp PvuII fragment 1n the cloned DNA that spans the J5 rearrangement s i t e , clearly demonstrating that the rearrangement found In cloned BL22 DNA 1s not a cloning a r t i f a c t . A schematic diagram of the reciprocal rearranged fra ...
... rearranged fragments In BL22 genomic DNA comigrates with the 748 bp PvuII fragment 1n the cloned DNA that spans the J5 rearrangement s i t e , clearly demonstrating that the rearrangement found In cloned BL22 DNA 1s not a cloning a r t i f a c t . A schematic diagram of the reciprocal rearranged fra ...
semester vi
... 4. Internet: Access a web page on any biological topic. 5. Frequency distribution of the given samples to find out arithmetic mean, median, mode. 6. Range and standard deviation for a biological data 7. Correlation using any biological data. 8. Download a specified sequence from NCBI and search with ...
... 4. Internet: Access a web page on any biological topic. 5. Frequency distribution of the given samples to find out arithmetic mean, median, mode. 6. Range and standard deviation for a biological data 7. Correlation using any biological data. 8. Download a specified sequence from NCBI and search with ...
Identification of functional sequences using associative memories
... active field of scientific research for some decades, attracting the attention in some research areas for the great power they offer despite the simplicity of its algorithms. The most important characteristic and, at the same time, fundamental purpose of an associative memory, is to correctly recall ...
... active field of scientific research for some decades, attracting the attention in some research areas for the great power they offer despite the simplicity of its algorithms. The most important characteristic and, at the same time, fundamental purpose of an associative memory, is to correctly recall ...
Supplementary Information (doc 1117K)
... Essential role for the dimerization domain of NuMA-RARalpha in its oncogenic activities and localization to NuMA sites within the nucleus. Oncogene 22, 858-868. Falini, B., Nicoletti, I., Bolli, N., Martelli, M. P., Liso, A., Gorello, P., Mandelli, F., Mecucci, C., and Martelli, M. F. (2007). Transl ...
... Essential role for the dimerization domain of NuMA-RARalpha in its oncogenic activities and localization to NuMA sites within the nucleus. Oncogene 22, 858-868. Falini, B., Nicoletti, I., Bolli, N., Martelli, M. P., Liso, A., Gorello, P., Mandelli, F., Mecucci, C., and Martelli, M. F. (2007). Transl ...
Analysis of EST data of the marine protist Oxyrrhis
... parasites in public databases. This could be a consequence of the high degree of specialization that characterizes the phylum Apicomplexa, typically exhibiting high divergence of protein sequences and heavy gene loss. Sequences with top Blast similarity to animals and fungi collectively (i.e. Opisth ...
... parasites in public databases. This could be a consequence of the high degree of specialization that characterizes the phylum Apicomplexa, typically exhibiting high divergence of protein sequences and heavy gene loss. Sequences with top Blast similarity to animals and fungi collectively (i.e. Opisth ...
Draft of first homework
... The human DICER1 gene encodes an important ribonuclease, involved in miRNA and siRNA processing. Several mRNAs representing this gene have been mapped to the human genome (March 2006 assembly). We will look closer at one of them: AK002007. What are the first five nucleotides from the first inferred ...
... The human DICER1 gene encodes an important ribonuclease, involved in miRNA and siRNA processing. Several mRNAs representing this gene have been mapped to the human genome (March 2006 assembly). We will look closer at one of them: AK002007. What are the first five nucleotides from the first inferred ...
Predicting TF affinities to Promoters of tissue specific genes
... Together these results indicate that predicted affinities for different vertebrate TFs are largely comparable when using the generic parameter description derived from yeast, irrespective of the length or information content of the corresponding matrices. This stays in stark contrast to the binding ...
... Together these results indicate that predicted affinities for different vertebrate TFs are largely comparable when using the generic parameter description derived from yeast, irrespective of the length or information content of the corresponding matrices. This stays in stark contrast to the binding ...
How much information does DNA instantiate?
... and the answer to the first question was yes, then it is more likely that the monomer is G than T (obviously if the first answer was no, then it more likely the monomer is C than A). To put it simply, knowledge of the biased probabilities (weighted dice) gives you some information before the questio ...
... and the answer to the first question was yes, then it is more likely that the monomer is G than T (obviously if the first answer was no, then it more likely the monomer is C than A). To put it simply, knowledge of the biased probabilities (weighted dice) gives you some information before the questio ...
DNA EVIDENCE: Officials admit error, dismiss case
... they would match any DNA profiles gathered from unsolved crimes in the valley. Thompson said the results tied the DNA profile mislabeled as Sotolusson's to two unsolved sexual assaults. Hoffman said the cases involved the abductions and sexual assaults of two juveniles at gunpoint in 1998 and 1999. ...
... they would match any DNA profiles gathered from unsolved crimes in the valley. Thompson said the results tied the DNA profile mislabeled as Sotolusson's to two unsolved sexual assaults. Hoffman said the cases involved the abductions and sexual assaults of two juveniles at gunpoint in 1998 and 1999. ...
Duplicative Transfer of a MADS Box Gene to a Plant Y Chromosome
... both paralogs, including SlAP3Y, are present in cDNA, but we have several further pieces of evidence. First, we investigated SlAP3 evolution in the genus and estimated selective constraint on the protein encoded by the duplicates by measuring Ka and Ks (the estimated mean numbers of nonsynonymous su ...
... both paralogs, including SlAP3Y, are present in cDNA, but we have several further pieces of evidence. First, we investigated SlAP3 evolution in the genus and estimated selective constraint on the protein encoded by the duplicates by measuring Ka and Ks (the estimated mean numbers of nonsynonymous su ...
Facilitation of chromatin dynamics by SARs Craig M Hart and Ulrich
... tobacco plant cell lines [22]. The SAR effect is only observed following stable integration into the genome in all biological systems tested [22–24]. These cis-acting elements hence appear to require a chromatin environment as transiently transfected DNA is known to be poorly organized into nucleoso ...
... tobacco plant cell lines [22]. The SAR effect is only observed following stable integration into the genome in all biological systems tested [22–24]. These cis-acting elements hence appear to require a chromatin environment as transiently transfected DNA is known to be poorly organized into nucleoso ...
video slide - Course
... Coordinately Controlled Genes • Unlike the genes of a prokaryotic operon – Coordinately controlled eukaryotic genes each have a promoter and control elements ...
... Coordinately Controlled Genes • Unlike the genes of a prokaryotic operon – Coordinately controlled eukaryotic genes each have a promoter and control elements ...
Eukaryotic Genomes
... Coordinately Controlled Genes • Unlike the genes of a prokaryotic operon – Coordinately controlled eukaryotic genes each have a promoter and control elements ...
... Coordinately Controlled Genes • Unlike the genes of a prokaryotic operon – Coordinately controlled eukaryotic genes each have a promoter and control elements ...
Gel electrophoresis of restriction digest
... loading buffer) that are incorporated into the loading buffer. Two widely used dyes displaying different mobility are Bromphenol Blue and Xylene Cyanol. Xylene Cyanol migrates with DNA fragments around 5kb and Bromphenol Blue migrates with DNA fragments around 0.5kb. Bromphenol Blue provides visuali ...
... loading buffer) that are incorporated into the loading buffer. Two widely used dyes displaying different mobility are Bromphenol Blue and Xylene Cyanol. Xylene Cyanol migrates with DNA fragments around 5kb and Bromphenol Blue migrates with DNA fragments around 0.5kb. Bromphenol Blue provides visuali ...
Matter and Organic Compounds
... _____ 2. Organic compounds are found in living organisms. _____ 3. Proteins are made out of amino acids. _____ 4. Proteins speed up chemical reactions. _____ 5. The DNA code carries instructions for the correct sequence of nucleic acids in a protein _____ 6. Sugars and phosphate groups form the midd ...
... _____ 2. Organic compounds are found in living organisms. _____ 3. Proteins are made out of amino acids. _____ 4. Proteins speed up chemical reactions. _____ 5. The DNA code carries instructions for the correct sequence of nucleic acids in a protein _____ 6. Sugars and phosphate groups form the midd ...
Denaturation transition of stretched DNA
... [22–26] (for a review on protein and small-molecule binding on DNA probed by DNA-stretching experiments, see [37]). The current body of experimental data suggests that forceinduced DNA melting is the prevalent mechanism in the presence of DNA-binding ligands, whereas S-DNA may occur as an intermedia ...
... [22–26] (for a review on protein and small-molecule binding on DNA probed by DNA-stretching experiments, see [37]). The current body of experimental data suggests that forceinduced DNA melting is the prevalent mechanism in the presence of DNA-binding ligands, whereas S-DNA may occur as an intermedia ...
How different is anatomy?
... The time was 1998-99 None of the model organism databases used standard terminology to describe biological function Drosophila sequence was imminent Largest genome sequenced at that time Two weeks, 3 dozen scientists, all new software How could we organize the annotation? ...
... The time was 1998-99 None of the model organism databases used standard terminology to describe biological function Drosophila sequence was imminent Largest genome sequenced at that time Two weeks, 3 dozen scientists, all new software How could we organize the annotation? ...
The Discovery of Transposition
... Ac element (see Genes VII: 15.12 Controlling elements form families of transposons). There are many additional, structurally different transposons that are mobilized by the Ac element. Some share little sequence identity with Ac except the 11 bp terminal inverted repetitions and some subterminal tra ...
... Ac element (see Genes VII: 15.12 Controlling elements form families of transposons). There are many additional, structurally different transposons that are mobilized by the Ac element. Some share little sequence identity with Ac except the 11 bp terminal inverted repetitions and some subterminal tra ...
Example of a scientific poster
... are most closely related phylogenetically are closest together on the trees. Similar information is shown on Table 1, which uses percentages to show how similar BRCA1 is for each pair of species. These three figures strongly imply that the BRCA1 gene came about early in the evolution of animals, and ...
... are most closely related phylogenetically are closest together on the trees. Similar information is shown on Table 1, which uses percentages to show how similar BRCA1 is for each pair of species. These three figures strongly imply that the BRCA1 gene came about early in the evolution of animals, and ...
Exam 2
... Lucilia cuprina, the sheep blowfly, lays its eggs in wounds and the wet fleece of sheep. The larvae hatch and burrow into the sheep’s skin, causing distress, reduced wool production and sometimes death. Particular chemicals were used in the past to control the L. cuprina but these became less effect ...
... Lucilia cuprina, the sheep blowfly, lays its eggs in wounds and the wet fleece of sheep. The larvae hatch and burrow into the sheep’s skin, causing distress, reduced wool production and sometimes death. Particular chemicals were used in the past to control the L. cuprina but these became less effect ...