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Complete Sequence of the Mitochondrial DNA of
Complete Sequence of the Mitochondrial DNA of

... 4L]). In addition, metazoan mtDNA usually contains at least one lengthy noncoding sequence which regulates and initiates mtDNA replication and transcription (control region; Wolstenholme 1992). In coelomate animals, mitochondrial gene arrangements are generally conserved within each phylum. For exam ...
Dragon Genetics
Dragon Genetics

... the other homologous chromosome on the other side of the popsicle stick. The appropriate alleles can be written directly on each side of the popsicle stick. Alternatively, a strip of paper with the alleles of one of the chromosomes can be pasted on one side of the popsicle stick, and a strip with th ...
Gene and Genome Sequencing
Gene and Genome Sequencing

... FungiDB  Exercises     h�p://fungidb.org     FungiDB  is  a  genome  database  with  integrated   bioinforma�cs  tools;  similar  to  FlyBase,  TAIR,  PlantGDB     FungiDB  is  part  of  EuPathDB  and  uses  same  so�ware   but  is  less   ...
Chapter 18 Regulation of Gene Expression Multiple-Choice
Chapter 18 Regulation of Gene Expression Multiple-Choice

... A) organization of the genes into clusters, with local chromatin structures influencing the expression of all the genes at once B) each of the genes sharing a common control element, allowing several activators to turn on their transcription, regardless of their location in the genome C) organizing  ...
Mycobacterium tuberculosis: Potassium uptake systems of
Mycobacterium tuberculosis: Potassium uptake systems of

... which are sensitive to clofazimine, including the MTB K+ transporters, as well as the Kup system of E. coli,39 suggests that a membrane disruptive mechanism, as recently proposed by us40 and others,41,42 appears most likely. In support of this contention, exposure to clofazimine is accompanied by a ...
Meiosis forms variable gametes
Meiosis forms variable gametes

... • Crossing over occurs at chiasmata during meiosis I. This process shuffles sections of DNA between the homologous pairs allowing the recombination of alleles to occur. Genes on the same chromosome are said to be linked. Correlation of the distance between linked genes and their frequency of recombi ...
Photosynthesis genes in marine viruses yield proteins during host
Photosynthesis genes in marine viruses yield proteins during host

... period. We also show that the expression of host photosynthesis genes declines over the course of infection and that replication of the phage genome is a function of photosynthesis. We thus propose that the phage genes are functional in photosynthesis and that they may be increasing phage fitness by ...
WNT targets - Stanford University
WNT targets - Stanford University

... the null phenotype of TCF mutations, they should be interpreted with some caution. On the other hand, there are TCF mutations in C. elegans, in a gene called pop-1 (Ref. 23). In line with the repressor model, the pop-1 phenotype is the opposite of the mom genes, which are components of WNT signaling ...
Expansion of the Pseudo-autosomal Region and Ongoing
Expansion of the Pseudo-autosomal Region and Ongoing

... available in the human PAR1 (Lien et al. 2000), despite the progress towards a complete genome sequence (International Human Genome Sequencing Consortium 2001). Eutherian PARs now include only a few genes (e.g., Van Laere et al. 2008), making it unlikely that SA polymorphisms will be found among the ...
Complete genome sequence of the rifamycin SV
Complete genome sequence of the rifamycin SV

McGrath, Patrick: Uses of the Singular Value Decompositions in Biology
McGrath, Patrick: Uses of the Singular Value Decompositions in Biology

... resembling beads on a string. (Ozkan et al, 2002) also used SVDs to study if two-state proteins fold by pathways or funnels. In their study, they solved the exact dynamics of a simple model (16mer amino acid chain) using a master equation formalism. Hidden intermediates had been discovered, and thei ...
Reliable classification of two-class cancer data using evolutionary
Reliable classification of two-class cancer data using evolutionary

... be made to generalize the procedure for any number of classes. In most problems involving identification of gene subsets in bioinformatics, the number of samples available is small when compared to the gene pool size. This aspect makes it difficult to identify which and how many genes are correlated ...
A gene complex controlling segmentation in Drosophila
A gene complex controlling segmentation in Drosophila

... four wings instead of two and insects are believed to have come from arthropod forms with many legs instead of six. During the evolution of the fly, two major groups of genes must have evolved: 'leg-suppressing' genes which removed legs from abdominal segments of millipede-like ancestors followed by ...
Mendel: Darwin`s Savior or Opponent
Mendel: Darwin`s Savior or Opponent

... Mendel did (could do) little to promote his results „ Elected abbot of one of the richest cloisters in the Hapsburg Empire and spent much of the rest of his life in battle over taxation of the monastery—“Fight for the Right” ...
Identifying 3D expression domains by graph clustering
Identifying 3D expression domains by graph clustering

... In this work we explore 3D expression domains by using Hi­C contact information to construct  an interaction network in combination with TRIP expression and position data. After clustering  this network using a community finding algorithm, resulting clusters are analysed for enrichment  of Gene Onto ...
Flowering-Time Genes Modulate the Response to
Flowering-Time Genes Modulate the Response to

Physical Mapping of Important Trait Loci in the Pig
Physical Mapping of Important Trait Loci in the Pig

... can utilize the genome information in order to find candidate drug targets. It will also be possible to create individual treatments, since patients suffering from the same disease react differently on medication, due to genetic differences. When the sequence of the human genome is known, the most t ...
Issue #14 November 2011 In This Issue Check Your Mailbox DBAR
Issue #14 November 2011 In This Issue Check Your Mailbox DBAR

... chromosome translocation where chromosomes are broken and fused to one another in an abnormal fashion1. The genes present at these translocation breakpoints are typically thought to play a role in the diseases where such translocations occur, which was indeed the case for DBA. In looking at the RPS1 ...
Gestation
Gestation

... ends when the zygote implants into the wall of the mother's uterus. from two to eight weeks following conception the major organs and bodily systems form ...
Genome reduction as the dominant mode of evolution
Genome reduction as the dominant mode of evolution

2001_butterfield_THE SUGARCANE GENOME
2001_butterfield_THE SUGARCANE GENOME

... officinarum does not consist of eight equal sets of ten homologous linkage groups, and may in fact differ between clones. Ming et al. (1998) suggested that the preferential pairing of S. robustum and S. officinarum, and a monoploid number of 10 for ancestral Saccharum may indicate a more ancient ori ...
The DNA sequence and biology of human chromosome 19
The DNA sequence and biology of human chromosome 19

... Figure S1: Chromosome 11 recombination rate versus sequence-based physical distance. Markers from the deCODE genetic map were aligned to the chromosome and the average recombination rate was calculated for each 1 Mb window along its length. Female, male, and sex-averaged recombination rates are indi ...
Characterization of the Cobalamin (Vitamin B12) Biosynthetic Genes
Characterization of the Cobalamin (Vitamin B12) Biosynthetic Genes

... for cobalamin synthesis. These enzymes are as follows. (i) Homocysteine methyltransferases catalyze the final step in methionine synthesis. Both a cobalamin-dependent (metH) enzyme and a cobalamin-independent (metE) enzyme are encoded in the genomes of Salmonella spp. and other enteric bacteria (23, ...
Applications of RNA minimum free energy computations
Applications of RNA minimum free energy computations

... and scan through a chromosome or genome, repeatedly moving the window forward one position. The window contents may then be scored using machine learning algorithms, such as weight matrices (Gribskov et al., 1987; Bucher, 1990), hidden Markov models (Baldi et al., 1994; Eddy et al. 1995) (see g40920 ...
X inactivation Xplained
X inactivation Xplained

... up-regulation is the consequence of sex-specific induction of Xist transcription on the future Xi and not stabilization of the Xist RNA [25]. In differentiated cells Xist repression on the Xa is mediated by DNA methylation [26]. A recent study shows that the methyl-DNA binding protein Mbd2 is requir ...
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Ridge (biology)

Ridges (regions of increased gene expression) are domains of the genome with a high gene expression; the opposite of ridges are antiridges. The term was first used by Caron et al. in 2001. Characteristics of ridges are:Gene denseContain many C and G nucleobasesGenes have short intronshigh SINE repeat densitylow LINE repeat density↑ 1.0 1.1
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