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diagnostic yield from reanalysis of whole exome
diagnostic yield from reanalysis of whole exome

... • WES data for all sequenced family members was reanalyzed using a custom-developed, proprietary bioinformatics tool (XomeAnalyzer) for variant annotation, filtering, viewing of WES data, and variant evaluation. • Variants were filtered based on inheritance patterns, variant type, custom-developed ...
Computational Diagnosis
Computational Diagnosis

... -Regularization (PAM,SVM,...) helps finding meaningful signatures ... -... but if I have found one there is still no guarantee -The patients in my data display differences in a signature between group a and b ... but does this apply to a new patient ...
Computational Diagnosis - Computational Diagnostics Group
Computational Diagnosis - Computational Diagnostics Group

... -Regularization (PAM,SVM,...) helps finding meaningful signatures ... -... but if I have found one there is still no guarantee -The patients in my data display differences in a signature between group a and b ... but does this apply to a new patient ...
New KS3 Year 9 Medium Plan
New KS3 Year 9 Medium Plan

... the characteristics of the organism Most students will be able to describe the process of fertilisation Some students will explain the process of fertilisation using appropriate terminology ...
Contract No: FIGH-CT-1999-00006
Contract No: FIGH-CT-1999-00006

... impact on radiogenic cancer of a rare strongly expressing mutant gene (Ptch+/-) and of potentially more common variant genes having a lesser degree of expression. Work with the Ptch+/- mouse strain adds further weight to the view that such rare mutations can substantially increase radiation cancer r ...
p53
p53

... • About 25-40% of most mammalian genomes consists of interspersed repetitive DNA. • Sequences hundreds to thousands of base pairs long appear at multiple sites in the genome. • The “dispersed” copies are similar but usually not identical to each other. ...
Chapter 5 Mutation and genetic variation
Chapter 5 Mutation and genetic variation

... dominant disorder. An Achrondoplastic individual’s condition must be the result of a mutation, if his parents do not have the condition. ...
G ENNOVATIONS Whole Exome Sequencing in Routine Clinical Practice Genomics Core Newsletter
G ENNOVATIONS Whole Exome Sequencing in Routine Clinical Practice Genomics Core Newsletter

... observation that 85% of disease-causing mutations are found in the coding sequence and regulatory regions of exons1 (For more information on WES, see Gennovations Volume 1, Issue 3). In recent years, there have been many published papers that use WES to identify unknown variants in individual patien ...
Inheritance, Genes, and Chromosomes
Inheritance, Genes, and Chromosomes

... (genes) occur in pairs and segregate from one another during formation of gametes. He also proposed that each pea plant has two genes for each character, one inherited from each parent. Mendel’s second law— Law of segregation: the two copies of a gene separate during gamete formation; each gamete re ...
Heredity Presentation
Heredity Presentation

... Law of Independent Assortment: Each trait has an equal and random chance of being chosen. Only true for genes on different chromosomes. ...
Document
Document

... particular genotype that express the expected phenotype • Expressivity: the degree to which a character is expressed ...
lecture _07_15_new
lecture _07_15_new

... hundreds of genes that differentiate between cancer tissues in different stages of the tumor were found. The arrow shows an example of a tumor cells which were not detected correctly by histological or other clinical parameters. Ramaswamy et al, 2003 Nat Genet 33:49-54 ...
Untangling Nature and Nurture
Untangling Nature and Nurture

...  complex molecule containing the genetic information that makes up the chromosomes  has two strands-forming a “double helix”--held together by bonds between pairs of nucleotides ...
click to - White Rose Research Online
click to - White Rose Research Online

... recent study produced low coverage sequence data for 199 B. rapa and 119 B. oleracea accessions to identify SNPs and trace parallel selection signals in the two subgenomes (Cheng et al. 2016). Regions undergoing positive selection could be identified (25 in B. rapa and 58 in B. oleracea), out of whi ...
Origin of Eukaryotic Cells
Origin of Eukaryotic Cells

... should not inherit any trait the parents don’t have, in our case, ESPs. This suggests that there are eukaryotic genes inherited only from the last common ancestor, independently from either archaea or bacteria. Therefore, the first part of this project was to explore the ESPs against a larger databa ...
gene-environment interaction and twin studies
gene-environment interaction and twin studies

... not large. For the favorable case of the MN blood group with two alleles of high frequency, around 530 MZ twins would need to be typed for 80% power at the 5% significance level. 6 A forward-looking (and rich!) gene-hunting company would be obtaining good phenotypes on large numbers of MZ twins agai ...
Leukaemia Section t(1;21)(p36;q22) Atlas of Genetics and Cytogenetics in Oncology and Haematology
Leukaemia Section t(1;21)(p36;q22) Atlas of Genetics and Cytogenetics in Oncology and Haematology

... Online updated version : http://AtlasGeneticsOncology.org/Anomalies/t0121ID1186.html DOI: 10.4267/2042/37593 This work is licensed under a Creative Commons Attribution-Noncommercial-No Derivative Works 2.0 France Licence. © 2000 Atlas of Genetics and Cytogenetics in Oncology and Haematology ...
Homeotic genes - Monroe County Schools
Homeotic genes - Monroe County Schools

...  PAX6 also works across different species.  If a PAX6 gene from a human is inserted into an eyeless mutant fly, it will cause an eye to form wherever it is expressed.  This provides evidence that there may be a shared ancestor among distantly related animals such as fruit flies and humans. ...
Multicolor reporter gene assay for toxicity testing
Multicolor reporter gene assay for toxicity testing

... is a simple reaction that is triggered by the addition of luciferin solution, and the equipment for measuring light intensity is simple because it uses only a photomultiplier or a charge-coupled device (CCD) camera; thus, reporter gene assays can be applied to high-throughput screening (HTS). For th ...
gene therapy - Deepwater.org
gene therapy - Deepwater.org

... current gene therapy is primarily experimental, with most human clinical trials only in the research stages Most often in context of treating lethal and disabling diseases, potential also for disease prevention ...
Unit 5 Genetics
Unit 5 Genetics

... When they are on opposite chromosomes they are in trans position. These terms are particularly useful in the Rh groups and can be demonstrated by the following example: in the heterozygote CDe/cDE, C and e are in cis and so are c and E, but C and E, and c and e, are in trans. Positions of genes on c ...
Discovering conserved DNA
Discovering conserved DNA

... • Could also be used to examine known motif enrichment • Is motif enrichment correlated with ChIP-seq enrichment? • Is motif more enriched in peak summits than peak flanks? • Motif analysis could identify transcription factor partners of ChIP-seq factors ...
cytoplasmic inheritance 222
cytoplasmic inheritance 222

... can produce a phenotype that is the same as the phenotype produced by a genotype; this phenotype is called a phenocopy. • In fruit flies, for example, the autosomal recessive mutation eyeless produces greatly reduced eyes. The eyeless phenotype can also be produced by exposing the larvae of normal f ...
Chapters 12 through 16 Unit objective answers checked
Chapters 12 through 16 Unit objective answers checked

... 15) How long does a cell spend in the mitosis phase? How long does it spend in interphase? The cell spends about 90% of its time in interphase, so 10% of its time is in the mitosis phase. 16) What are the three phases of interphase? Describe what happens during each one. The three phases of interpha ...
genetics - Maria Regina
genetics - Maria Regina

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Minimal genome

The concept of minimal genome assumes that genomes can be reduced to a bare minimum, given that they contain many non-essential genes of limited or situational importance to the organism. Therefore, if a collection of all the essential genes were put together, a minimum genome could be created artificially in a stable environment. By adding more genes, the creation of an organism of desired properties is possible. The concept of minimal genome arose from the observations that many genes do not appear to be necessary for survival. In order to create a new organism a scientist must determine the minimal set of genes required for metabolism and replication. This can be achieved by experimental and computational analysis of the biochemical pathways needed to carry out basic metabolism and reproduction. A good model for a minimal genome is Mycoplasma genitalium, the organism with the smallest known genome. Most genes that are used by this organism are usually considered essential for survival; based on this concept a minimal set of 256 genes has been proposed.
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