DNA Diversity in Sex-Linked and Autosomal Genes of the Plant
... those of S. latifolia and S. dioica from the SlX1 and SlY1 sequences, the total number of sites in this analysis was 1,012 nt. To estimate the recombination statistic, CHud (Hudson 1987), and for the FS neutrality tests (Fu 1997), we also used DNAsp, version 3.5, and P values for the FS neutrality t ...
... those of S. latifolia and S. dioica from the SlX1 and SlY1 sequences, the total number of sites in this analysis was 1,012 nt. To estimate the recombination statistic, CHud (Hudson 1987), and for the FS neutrality tests (Fu 1997), we also used DNAsp, version 3.5, and P values for the FS neutrality t ...
Knox. The Gene Genie.
... new protein targeted to the right DNA sequence. But Doudna and Charpentier realized that Cas9, an enzyme that the strep bacterium used in its immunological defense, employed RNA to guide it to the DNA target. Probing for the target, the Cas9-RNA complex would bounce off the DNA, seemingly at random, ...
... new protein targeted to the right DNA sequence. But Doudna and Charpentier realized that Cas9, an enzyme that the strep bacterium used in its immunological defense, employed RNA to guide it to the DNA target. Probing for the target, the Cas9-RNA complex would bounce off the DNA, seemingly at random, ...
letter Widespread aneuploidy revealed by DNA microarray expression profiling
... mutants profiled exhibited chromosome-wide expression biases, leading to spurious correlations among profiles. Competitive hybridization of genomic DNA from the mutant strains and their isogenic parental wild-type strains showed they were aneuploid for whole chromosomes or chromosomal segments. Expr ...
... mutants profiled exhibited chromosome-wide expression biases, leading to spurious correlations among profiles. Competitive hybridization of genomic DNA from the mutant strains and their isogenic parental wild-type strains showed they were aneuploid for whole chromosomes or chromosomal segments. Expr ...
Practice guidelines for the Interpretation and Reporting of
... appear to be pathogenic because it is in cis with an unidentified pathogenic mutation in a particular family or families. Caution must therefore be exercised in assigning pathogenicity to such variants, although they may act as acceptable linked markers in certain diseases. Such changes should be re ...
... appear to be pathogenic because it is in cis with an unidentified pathogenic mutation in a particular family or families. Caution must therefore be exercised in assigning pathogenicity to such variants, although they may act as acceptable linked markers in certain diseases. Such changes should be re ...
Different types of microarrays
... Sequence length varies from a few hundred bases to a thousand or so. ...
... Sequence length varies from a few hundred bases to a thousand or so. ...
letters
... both the ancestral Y chromosome and the masculinizing mutation will increase when rare (Fig. 2b and region 4 in Fig. 3). The result is a protected polymorphism at both sex-determining loci, and the population evolves a two-factor sex-determination system. To our knowledge, sex-antagonistic selection ...
... both the ancestral Y chromosome and the masculinizing mutation will increase when rare (Fig. 2b and region 4 in Fig. 3). The result is a protected polymorphism at both sex-determining loci, and the population evolves a two-factor sex-determination system. To our knowledge, sex-antagonistic selection ...
Attribute Reference Sheet
... Score attributes give rise to columns with the same name as the score column in the patch attribute and are calculated as weighted averages of the patch regions overlapping with the region specified in the input dataset. Weighting is performed according to the length of overlap. Class attributes giv ...
... Score attributes give rise to columns with the same name as the score column in the patch attribute and are calculated as weighted averages of the patch regions overlapping with the region specified in the input dataset. Weighting is performed according to the length of overlap. Class attributes giv ...
linkage map
... mapped to a chromosomal locus Requirements : Karyotype & Labeled Gene probe fluorescent spots appear in the same location on homologous chromosomes ...
... mapped to a chromosomal locus Requirements : Karyotype & Labeled Gene probe fluorescent spots appear in the same location on homologous chromosomes ...
Bio 211 Genetics Laboratory Experiment 5: Bioinformatics
... based approaches. Through program algorithms, coding sequences, promoters, and other functional DNA sequences can be identified from databases of genomic information, and interspecific comparisons can be made to address evolutionary relationships. One of the most widely‐used in silico (in silic ...
... based approaches. Through program algorithms, coding sequences, promoters, and other functional DNA sequences can be identified from databases of genomic information, and interspecific comparisons can be made to address evolutionary relationships. One of the most widely‐used in silico (in silic ...
A rough guide to Drosophila mating schemes (light version 2.1) 1
... base searches (capitalising on the existing sequences of total genomes) homologous genes in higher vertebrates or humans are identified. Based on knowledge derived from fly research and the empirical assumption that principal mechanisms are often conserved, informed and focussed experiments can be c ...
... base searches (capitalising on the existing sequences of total genomes) homologous genes in higher vertebrates or humans are identified. Based on knowledge derived from fly research and the empirical assumption that principal mechanisms are often conserved, informed and focussed experiments can be c ...
Bioinformatics 3 V7 * Function Annotation, Gene Regulation
... Diauxic shift affects hundreds of genes Cy3/Cy5 labels (these are 2 dye molecules for the 2-color microarray), comparison of 2 probes at 9.5 hours distance; w and w/o glucose Red: genes induced by diauxic shift (710 genes > 2-fold) Green: genes repressed by diauxic shift (1030 genes change > 2-fold ...
... Diauxic shift affects hundreds of genes Cy3/Cy5 labels (these are 2 dye molecules for the 2-color microarray), comparison of 2 probes at 9.5 hours distance; w and w/o glucose Red: genes induced by diauxic shift (710 genes > 2-fold) Green: genes repressed by diauxic shift (1030 genes change > 2-fold ...
Database Searches for similar sequences
... matches with reasonable speed • Let's go through step by step to learn how BLAST works! ...
... matches with reasonable speed • Let's go through step by step to learn how BLAST works! ...
genetics
... form in each cell from which microtubules radiate as the centrioles move towards opposite poles of the cell. Prometaphase: The nuclear membrane begins to disintegrate and chromosome spread around the cells. Each chromosome becomes attached at its centromere to a microtubule of the mitotic ...
... form in each cell from which microtubules radiate as the centrioles move towards opposite poles of the cell. Prometaphase: The nuclear membrane begins to disintegrate and chromosome spread around the cells. Each chromosome becomes attached at its centromere to a microtubule of the mitotic ...
Advances in maize genomics: the emergence of positional cloning
... maize and teosinte to five major QTL. One of these QTL mapped to the region containing teosinte branched1 (tb1), whose mutant phenotype suggests that it is an excellent candidate gene. Cloning of the gene and analysis of both maize and teosinte alleles has supported tb1 as the gene for this QTL [37, ...
... maize and teosinte to five major QTL. One of these QTL mapped to the region containing teosinte branched1 (tb1), whose mutant phenotype suggests that it is an excellent candidate gene. Cloning of the gene and analysis of both maize and teosinte alleles has supported tb1 as the gene for this QTL [37, ...
DNA research
... The putative product of the partial ORF of yojP shows significant homology to the product of the large subunit of ribonucleotide reductase (NrdE) located at 168° on the chromosome of B. subtilis.12 These proteins share 77% identity in a 319-amino acid (aa) overlap. Table 2 indicates that the yojP pr ...
... The putative product of the partial ORF of yojP shows significant homology to the product of the large subunit of ribonucleotide reductase (NrdE) located at 168° on the chromosome of B. subtilis.12 These proteins share 77% identity in a 319-amino acid (aa) overlap. Table 2 indicates that the yojP pr ...
Release Notes for Genomes Processed Using Complete Genomics
... 10. If there is a frameshift in the reference genome with respect to RefSeq, the reference amino acid sequence is reported in the genomeRefSequence field of the gene-[ASM-ID].tsv.bz2 as if the frameshift had not occurred. 11. For a few transcripts in which alignment information cannot be parsed, imp ...
... 10. If there is a frameshift in the reference genome with respect to RefSeq, the reference amino acid sequence is reported in the genomeRefSequence field of the gene-[ASM-ID].tsv.bz2 as if the frameshift had not occurred. 11. For a few transcripts in which alignment information cannot be parsed, imp ...
Drosophila melanogaster
... Virgins can be distinguished by their pale pigmentation, by their morphology, or by the presence of a dark spot in their abdomens . Alternatively, they can be collected on the basis of timing – female flies does not mate with the first 8 hour of emergence as adults. A more efficient method for maxim ...
... Virgins can be distinguished by their pale pigmentation, by their morphology, or by the presence of a dark spot in their abdomens . Alternatively, they can be collected on the basis of timing – female flies does not mate with the first 8 hour of emergence as adults. A more efficient method for maxim ...
An Exploration of Command-Line BLAST
... Searching sequence data for similarities is one of the most common tasks in bioinformatics. In fact, identifying and quantifying sequence similarity (either nucleotide or amino acid) underlies many other types of sequence analyses. Sequence identity (as a percent) is straightforward, but other metri ...
... Searching sequence data for similarities is one of the most common tasks in bioinformatics. In fact, identifying and quantifying sequence similarity (either nucleotide or amino acid) underlies many other types of sequence analyses. Sequence identity (as a percent) is straightforward, but other metri ...
Somatic BRAF Mutation - Lynch Syndrome Screening Network
... associated with a significantly poorer survival in microsatellite-stable colon cancers (2) and poor prognosis of papillary thyroid carcinomas when additional other gene alterations are present (3) . In addition, due to its absence in Lynch syndrome (LS), it has also been used as a guide regarding fu ...
... associated with a significantly poorer survival in microsatellite-stable colon cancers (2) and poor prognosis of papillary thyroid carcinomas when additional other gene alterations are present (3) . In addition, due to its absence in Lynch syndrome (LS), it has also been used as a guide regarding fu ...
meiosis_9_for_VLE
... But suppose the plant didn’t get enough light, water or nitrate? The plant and the bananas on it would be smaller In other words, environmental factors may limit the expression of some genes Polygenic traits tend to be more affected by environmental factors than those under monogenic control ...
... But suppose the plant didn’t get enough light, water or nitrate? The plant and the bananas on it would be smaller In other words, environmental factors may limit the expression of some genes Polygenic traits tend to be more affected by environmental factors than those under monogenic control ...
Tutorial - Ensembl
... An Ensembl gene may have multiple transcripts reflecting alternative splicing, in this case the EPO gene only shows one transcript in Ensembl. ...
... An Ensembl gene may have multiple transcripts reflecting alternative splicing, in this case the EPO gene only shows one transcript in Ensembl. ...
Gene Section FAM123B (family with sequence similarity 123B) in Oncology and Haematology
... mutations in exon 3 of CTNNB1 (encoding betacatenin), implicating the activation of the WNT signaling pathway in the formation of Wilms tumors since both inactivating mutations of WTX and activating mutations of CTNNB1 function to activate ...
... mutations in exon 3 of CTNNB1 (encoding betacatenin), implicating the activation of the WNT signaling pathway in the formation of Wilms tumors since both inactivating mutations of WTX and activating mutations of CTNNB1 function to activate ...
WJG-23-1787
... HBx. Through analysis using miRnada and TargetScan software, potential miRNA targets were successfully predicted. In combination with the expression pattern of target genes (Figure 1A), we generated several significant miRNA-mRNA pairs, which exhibited opposite expression patterns in L02/pcDNA and L ...
... HBx. Through analysis using miRnada and TargetScan software, potential miRNA targets were successfully predicted. In combination with the expression pattern of target genes (Figure 1A), we generated several significant miRNA-mRNA pairs, which exhibited opposite expression patterns in L02/pcDNA and L ...
EXAM 3
... ___T__ 23. Substance H is involved in blood type ___T__ 24. An individual may have no more than two alleles for a locus. ___T__ 25. The greater the distance between 2 linked genes, the greater the recombination frequency. ___F__ 26. If two genes are following Mendelian patterns of inheritance, the g ...
... ___T__ 23. Substance H is involved in blood type ___T__ 24. An individual may have no more than two alleles for a locus. ___T__ 25. The greater the distance between 2 linked genes, the greater the recombination frequency. ___F__ 26. If two genes are following Mendelian patterns of inheritance, the g ...
Cloning genes into the AdZ vectors and making
... Note Occasionally colonies are present that appear to be white but which still contain the amp/sacB/lacZ cassette. These false positives are easily avoided. Hold the plate up at an angle to a fluorescent light (not directly in front of the light, or you won’t be able to see the difference). The fals ...
... Note Occasionally colonies are present that appear to be white but which still contain the amp/sacB/lacZ cassette. These false positives are easily avoided. Hold the plate up at an angle to a fluorescent light (not directly in front of the light, or you won’t be able to see the difference). The fals ...
Genome evolution
Genome evolution is the process by which a genome changes in structure (sequence) or size over time. The study of genome evolution involves multiple fields such as structural analysis of the genome, the study of genomic parasites, gene and ancient genome duplications, polyploidy, and comparative genomics. Genome evolution is a constantly changing and evolving field due to the steadily growing number of sequenced genomes, both prokaryotic and eukaryotic, available to the scientific community and the public at large.