
Protein Family Classification using Sparse Markov Transducers
... is a model that predicts the next symbol in a sequence based on the previous symbols. This approach is based on the presence of common short sequences (motifs) through the protein family. One drawback of PSTs is that they rely on exact matches to the conditional sequences (e.g., 3-hydroxyacyl-Co ...
... is a model that predicts the next symbol in a sequence based on the previous symbols. This approach is based on the presence of common short sequences (motifs) through the protein family. One drawback of PSTs is that they rely on exact matches to the conditional sequences (e.g., 3-hydroxyacyl-Co ...
Xanthomonas campestris
... (Supporting Information Table 3). It was interesting to observe a lower diversity of the bacterial proteins identified in REU as well as a higher amount of plant proteins in this sample. Similar results were obtained by Villeth et al. [13] when analyzing Xcc recovered from the resistant plant (REU) ...
... (Supporting Information Table 3). It was interesting to observe a lower diversity of the bacterial proteins identified in REU as well as a higher amount of plant proteins in this sample. Similar results were obtained by Villeth et al. [13] when analyzing Xcc recovered from the resistant plant (REU) ...
Investigating the role of plant SNFI
... respectively. The constructs have been introduced into the potato genome by Agrobucterium-mediated transformation of leaf discs. Despite several independent attempts, only a single plant has been generated containing the CaMV 3%-based construct. This may indicate that constitutive expression of the ...
... respectively. The constructs have been introduced into the potato genome by Agrobucterium-mediated transformation of leaf discs. Despite several independent attempts, only a single plant has been generated containing the CaMV 3%-based construct. This may indicate that constitutive expression of the ...
ASAP1 Antibody (Center)
... rabbits immunized with a KLH conjugated synthetic peptide between 360-388 amino acids from the Central region of human ASAP1. Dilution WB~~1:1000 Format Purified polyclonal antibody supplied in PBS with 0.09% (W/V) sodium azide. This antibody is purified through a protein A column, followed by pepti ...
... rabbits immunized with a KLH conjugated synthetic peptide between 360-388 amino acids from the Central region of human ASAP1. Dilution WB~~1:1000 Format Purified polyclonal antibody supplied in PBS with 0.09% (W/V) sodium azide. This antibody is purified through a protein A column, followed by pepti ...
splice presentation
... Certain parts of RNA do not code for proteins, they need to be cut out Exon – part of gene that codes for protein Intron – does not code for protein, splice it out! ...
... Certain parts of RNA do not code for proteins, they need to be cut out Exon – part of gene that codes for protein Intron – does not code for protein, splice it out! ...
Genome Biology and
... ¤ Gene expression is regulated by transcription factors selectively binding to regulatory regions – protein–DNA interactions involve sequence-specific recognition – Other factors, such as chromatin structure may be involved ...
... ¤ Gene expression is regulated by transcription factors selectively binding to regulatory regions – protein–DNA interactions involve sequence-specific recognition – Other factors, such as chromatin structure may be involved ...
SCGN Blocking Peptide (C-term)
... distinct subtypes of neurons with highest expression in the molecular layer of the cerebellum (stellate and basket cells), in the anterior part of the pituitary gland, in the thalamus, in the hypothalamus and in a subgroup of neocortical neurons. ...
... distinct subtypes of neurons with highest expression in the molecular layer of the cerebellum (stellate and basket cells), in the anterior part of the pituitary gland, in the thalamus, in the hypothalamus and in a subgroup of neocortical neurons. ...
Impact of clostridial glucosylating toxins on the
... were identified that had been quantified by at least 2 labeled peptides. It was carefully checked whether for ICPL-labeled peptides corresponding unlabeled peptides were present. No unlabeled peptide was detected if a labeled one was present. This analysis revealed the identification of 327 proteins ...
... were identified that had been quantified by at least 2 labeled peptides. It was carefully checked whether for ICPL-labeled peptides corresponding unlabeled peptides were present. No unlabeled peptide was detected if a labeled one was present. This analysis revealed the identification of 327 proteins ...
Section Abstracts: Structural Biology, Biochemistry, and Biophysics
... W ang, Roy T. Sabo, Department of Biostatistics, Virginia Commonwealth University, Richmond, Virginia 23298-0032. Dependent binary data can be simply simulated using the multinomial sampling method. W e extend this method to simulate dependent binary data with clustered random effect structures. Sev ...
... W ang, Roy T. Sabo, Department of Biostatistics, Virginia Commonwealth University, Richmond, Virginia 23298-0032. Dependent binary data can be simply simulated using the multinomial sampling method. W e extend this method to simulate dependent binary data with clustered random effect structures. Sev ...
View video content as a PDF
... alpha helices are always right handed. One simple way to check this is to imagine the alpha helix as a spiral staircase. When walking up the staircase, your right hand should be on the outside railing of the staircase. If this is not the case, the helix is left handed and will have to be re-made. Th ...
... alpha helices are always right handed. One simple way to check this is to imagine the alpha helix as a spiral staircase. When walking up the staircase, your right hand should be on the outside railing of the staircase. If this is not the case, the helix is left handed and will have to be re-made. Th ...
Proteins
... – “water fearing” amino acids – try to get away from water in cell • the protein folds ...
... – “water fearing” amino acids – try to get away from water in cell • the protein folds ...
Protease Inhibitor Cocktail VI, Plant Cells Catalog Number: J64576
... Crude cell extracts contain a number of endogenous enzymes, such as proteases and phosphatases, which are capable of degrading proteins of interest present in the extract. As a result, this biochemical process can drastically reduce the yield of any protein during any isolation step and endanger all ...
... Crude cell extracts contain a number of endogenous enzymes, such as proteases and phosphatases, which are capable of degrading proteins of interest present in the extract. As a result, this biochemical process can drastically reduce the yield of any protein during any isolation step and endanger all ...
environmental life cycle assessment of alternative protein sources
... Very few LCA studies have been conducted on alternative proteins, like marine, insect or single cell protein Thus, clearly a need for more LCA studies in order to make fair comparisons – and improve and optimise the production Preliminary results from the few studies: For wet processes: the drying p ...
... Very few LCA studies have been conducted on alternative proteins, like marine, insect or single cell protein Thus, clearly a need for more LCA studies in order to make fair comparisons – and improve and optimise the production Preliminary results from the few studies: For wet processes: the drying p ...
Bodyguards and assassins: Bcl-2 family proteins and apoptosis
... Chronic lymphocytic leukaemia (CLL) is the most common B-cell malignancy in the Western world and exists as subtypes with very different clinical courses. CLL is generally described as a disease of failed apoptosis. Apoptosis resistance may stem from a combination of microenvironmental survival sign ...
... Chronic lymphocytic leukaemia (CLL) is the most common B-cell malignancy in the Western world and exists as subtypes with very different clinical courses. CLL is generally described as a disease of failed apoptosis. Apoptosis resistance may stem from a combination of microenvironmental survival sign ...
Application 1
... to enhance the SERS effect and provide better signal output. 2. Proteinase 3: This is a clinically relevant biomarker used in diagnosis of the human autoimmune disease Wegener’s granulomatosis. The antigen is immobilized onto the gold-coated array surface and probed with serum sample containing the ...
... to enhance the SERS effect and provide better signal output. 2. Proteinase 3: This is a clinically relevant biomarker used in diagnosis of the human autoimmune disease Wegener’s granulomatosis. The antigen is immobilized onto the gold-coated array surface and probed with serum sample containing the ...
Screening for novel snake venom toxins using protein chemistry and molecular biology.
... We have been using protein design and engineering methods to develop short bioactive ligands with different therapeutic applications. This project aims at designing mini proteins and enzymes which retain most of the desired biochemical and biological properties of the parent protein. We have marked ...
... We have been using protein design and engineering methods to develop short bioactive ligands with different therapeutic applications. This project aims at designing mini proteins and enzymes which retain most of the desired biochemical and biological properties of the parent protein. We have marked ...
TAF15 Antibody
... evolutionarily conserved proteins known as TBP-associated factors or TAFs. TAFs may participate in basal transcription, serve as coactivators, function in promoter recognition or modify general transcription factors (GTFs) to facilitate complex assembly and transcription initiation. Its gene encodes ...
... evolutionarily conserved proteins known as TBP-associated factors or TAFs. TAFs may participate in basal transcription, serve as coactivators, function in promoter recognition or modify general transcription factors (GTFs) to facilitate complex assembly and transcription initiation. Its gene encodes ...
Prior Art - Cabic.com
... The description explains that the activity of protein P was previously known to result in lowering blood pressure. The inventors assert they have newly produced a stable crystalline form of protein P. Protein P in crystalline form is inactive. The description gives experimental data with exp ...
... The description explains that the activity of protein P was previously known to result in lowering blood pressure. The inventors assert they have newly produced a stable crystalline form of protein P. Protein P in crystalline form is inactive. The description gives experimental data with exp ...
Bioe 190 HW6 - Ortholog identification - b
... KCNA1_HUMAN using a reciprocal best BLAST (RBB) approach. The first challenge you’ll have is that the NR database includes many duplicate entries (proteins) corresponding to the same gene; it’s not unusual for protein sequences to be 100% identical (exact matches along their entire lengths) but have ...
... KCNA1_HUMAN using a reciprocal best BLAST (RBB) approach. The first challenge you’ll have is that the NR database includes many duplicate entries (proteins) corresponding to the same gene; it’s not unusual for protein sequences to be 100% identical (exact matches along their entire lengths) but have ...
Protein-surface interactions: insights from atomistic - Cnr-Nano
... within a biological system (e.g., nanoparticles for drug delivery, for diagnostic or accidentally uptaken [1]; surgical implants) are readily covered with proteins, whose nature, orientation and subsequent conformational changes are determined by protein-inorganics interactions [2]. On the other han ...
... within a biological system (e.g., nanoparticles for drug delivery, for diagnostic or accidentally uptaken [1]; surgical implants) are readily covered with proteins, whose nature, orientation and subsequent conformational changes are determined by protein-inorganics interactions [2]. On the other han ...
Proteomics

Proteomics is the large-scale study of proteins, particularly their structures and functions. Proteins are vital parts of living organisms, as they are the main components of the physiological metabolic pathways of cells. The term proteomics was first coined in 1997 to make an analogy with genomics, the study of the genome. The word proteome is a portmanteau of protein and genome, and was coined by Marc Wilkins in 1994 while working on the concept as a PhD student.The proteome is the entire set of proteins, produced or modified by an organism or system. This varies with time and distinct requirements, or stresses, that a cell or organism undergoes. Proteomics is an interdisciplinary domain formed on the basis of the research and development of the Human Genome Project; it is also emerging scientific research and exploration of proteomes from the overall level of intracellular protein composition, structure, and its own unique activity patterns. It is an important component of functional genomics.While proteomics generally refers to the large-scale experimental analysis of proteins, it is often specifically used for protein purification and mass spectrometry.