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7.03 Problem Set 1 Solutions 1. 2.
7.03 Problem Set 1 Solutions 1. 2.

Chapter 9
Chapter 9

... paternally derived genes are absent or disrupted, the PWS phenotype results. When this same segment is missing from the maternally derived chromosome 15, a completely different disease, Angelman syndrome, arises. This pattern of inheritance when expression of a gene depends on whether it is inherite ...
lecture _07_15_new
lecture _07_15_new

... hundreds of genes that differentiate between cancer tissues in different stages of the tumor were found. The arrow shows an example of a tumor cells which were not detected correctly by histological or other clinical parameters. Ramaswamy et al, 2003 Nat Genet 33:49-54 ...
IntroToBioinformatics
IntroToBioinformatics

... The best way to access articles at Cal State LA is to obtain the exact reference from PubMed. Then search to the CSULA library database for the article: http://www.calstatela.edu/library/mudir1.htm ...
Chromosomal Abnormalities
Chromosomal Abnormalities

... somehow able to stop the bleeding. Because of his inexplicable ability to help Alexei, Rasputin became part of the “inner circle” and close confidant of the royal family, which also angered many people who did not trust him. Thus, when the Russian Revolution began, Rasputin was among the first to be ...
Powerpoint - Wishart Research Group
Powerpoint - Wishart Research Group

... • ~0.5% of splice sites are non-canonical (i.e. the intron is not GT...AG) • It is estimated that 5% of human genes may have non-canonical splice sites • ~50% of higher eukaryotes are ...
Analysis of ATP Synthase Genes within Elizabethkingia anophelis R26
Analysis of ATP Synthase Genes within Elizabethkingia anophelis R26

... Jessica Gore, Michael Schmidt, Morgan Westfahl, MaKayla Young, Patricia Canaan, William Johnson, Nathanial Torres ...
Laboratory of RNA – ebook
Laboratory of RNA – ebook

... “exon-skipping” (2, 3). By introducing small RNA molecules, they mask the mRNA to the attack of the splicing machinery, inducing it to jump certain portions of the mRNA, thus restoring the correct message. The team predicts that exon-skipping holds a great deal of promise as a ...
Prostate cancer - American Cancer Society
Prostate cancer - American Cancer Society

... DNA is the substance in our cells that makes up our genes, which are the instructions for how a cell works. Changes in DNA, called mutations, can cause cancer. Some cancer-related DNA mutations can be inherited, which means that the person is born with the mutated DNA in all the body’s cells. But mo ...
Intro Data Clustering - Genomics & Bioinformatics at Purdue
Intro Data Clustering - Genomics & Bioinformatics at Purdue

... Ross et al., Systematic variation in gene expression patterns in human cancer cell lines. Nature Genetics v24, 227-235, 2000 Note breast cancer cell lines, derived from the same patient. ...
MEMCover: integrated analysis of mutual exclusivity and functional
MEMCover: integrated analysis of mutual exclusivity and functional

New Mutations in the KVLQT1 Potassium Channel That Cause Long
New Mutations in the KVLQT1 Potassium Channel That Cause Long

Text S1.
Text S1.

... Due to the large number of GeneRIFs, the BioPortal Annotator may timeout while the user is looping through genes to annotate. It is suggested that the annotation is done incrementally and joined or intermittent saves of the annotations is done to prevent timely re-annotation. The given set of aging ...
Cross over frequency and gene mapping Notes
Cross over frequency and gene mapping Notes

... Crossing over –  ­ homologous chromosomes pair up during prophase I, they may exchange pieces of  chromosome ­ Linked genes do not always stay together in gamete formation ­ Crossing over results in new combinations of genes ­ Crossing over occurs during meiosis and cause linked genes to separate. ­ ...
10.6AC The Pattern - Texarkana Independent School District
10.6AC The Pattern - Texarkana Independent School District

... 1. On rare occasion, codons are inserted, deleted, or substituted for one another during the process of DNA replication. Biologists identify these changes in DNA molecules as ___ (a) transferences. (b) mutations. (c) replications. (d) natural selection. 2. A biology teacher lists and explains some o ...
Causes, Risk Factors, and Prevention
Causes, Risk Factors, and Prevention

August 2008
August 2008

... A boy entering grade one is 1.5 m tall and in grade three he is 2.0 m tall. If the other grade three children are 1.2 m tall, which hormone is overactive in this boy? (A) (B) (C) (D) ...
Introduction to the course II
Introduction to the course II

... At the beginning of modern genetics it was assumed that the majority of genes are essential for the survival of the cell, just as parts of a perfect machine would be. Nowadays it is known that only about 15% of the genes are essential under any specific experimental conditions. This is due to the fa ...
Document
Document

... of classes B3 and B4. These two classes could not be easily distinguished from one another, consistent with their both containing-primarily B-ALL samples, and suggesting that B3 and B4 might best be merged into a single class. ...
Oncomedicine Base Excision Repair Manipulation in Breast
Oncomedicine Base Excision Repair Manipulation in Breast

... damage, inducing apoptosis and leading to arrest in cell cycle [10, 11, 14, 17-20]. DNA damages are found due to many extracellular and intracellular chemical factors like free reactive oxygen species, base hydrolyzing agents or by exposure of cells to harmful rays. Rigorous accumulation of such mut ...
Supplementary Methods and Tables Supplementary Methods ChIP
Supplementary Methods and Tables Supplementary Methods ChIP

... First, gene data sets identified in the promoter-bias approach were analyzed through the oPOSSUM motif search system to identify AML1 TFBS3. For this analysis, an area of –5 kb to +5 kb around the TSS was scanned using the vertebrate-specific PSSMs in the JASPAR database4, setting the parameters so ...
Genetics
Genetics

... 4. Some genes are dominant, whereas other genes are recessive. 5. Dominant genes hide recessive genes when both are inherited by an organism. 6. Some genes are neither dominant nor recessive. These genes show incomplete dominance. ...
Computational Biology
Computational Biology

How Genes and Genomes Evolve
How Genes and Genomes Evolve

... 2. Gametes (reproductive cells) from each plant have only 1 copy of the gene for each trait; plants arise from union of male & female gametes 3. Law of Segregation - an organism's alleles separate from one another during gamete formation (into that organism’s gametes , see point 2). 4. Law of Indepe ...
d. Method Delivery: Lectures, assignments, tutorials and practicals
d. Method Delivery: Lectures, assignments, tutorials and practicals

... The course introduces students to the basic principles of classical genetics and inheritance as espoused by Mendel. It helps to build the foundations that will enable students to understand and apply genetic principles in advanced undergraduate and postgraduate studies. The course content logically ...
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Oncogenomics



Oncogenomics is a relatively new sub-field of genomics that applies high throughput technologies to characterize genes associated with cancer. Oncogenomics is synonymous with ""cancer genomics"". Cancer is a genetic disease caused by accumulation of mutations to DNA leading to unrestrained cell proliferation and neoplasm formation. The goal of oncogenomics is to identify new oncogenes or tumor suppressor genes that may provide new insights into cancer diagnosis, predicting clinical outcome of cancers, and new targets for cancer therapies. The success of targeted cancer therapies such as Gleevec, Herceptin, and Avastin raised the hope for oncogenomics to elucidate new targets for cancer treatment.Besides understanding the underlying genetic mechanisms that initiates or drives cancer progression, one of the main goals of oncogenomics is to allow for the development of personalized cancer treatment. Cancer develops due to an accumulation of mutations in DNA. These mutations accumulate randomly, and thus, different DNA mutations and mutation combinations exist between different individuals with the same type of cancer. Thus, identifying and targeting specific mutations which have occurred in an individual patient may lead to increased efficacy of cancer therapy.The completion of the Human Genome Project has greatly facilitated the field of oncogenomics and has increased the abilities of researchers to find cancer causing genes. In addition, the sequencing technologies now available for sequence generation and data analysis have been applied to the study of oncogenomics. With the amount of research conducted on cancer genomes and the accumulation of databases documenting the mutational changes, it has been predicted that the most important cancer-causing mutations, rearrangements, and altered expression levels will be cataloged and well characterized within the next decade.Cancer research may look either on the genomic level at DNA mutations, the epigenetic level at methylation or histone modification changes, the transcription level at altered levels of gene expression, or the protein level at altered levels of protein abundance and function in cancer cells. Oncogenomics focuses on the genomic, epigenomic, and transcript level alterations in cancer.
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