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transcription factor
transcription factor

... Coordinately Controlled Genes in Eukaryotes • Unlike the genes of a prokaryotic operon, each of the co-expressed eukaryotic genes has a promoter and control elements • These genes can be scattered over different chromosomes, but each has the same combination of control elements • Copies of the acti ...
Genome Rearrangements, Synteny, and Comparative Mapping
Genome Rearrangements, Synteny, and Comparative Mapping

... • No net gain or loss of genetic material: normal phenotype. • Increased risk for an abnormal child or spontaneous pregnancy loss ...
Manuals: XL1-Red Competent Cells
Manuals: XL1-Red Competent Cells

... involves propagating the cloned gene into an Escherichia coli strain, called XL1-Red, which is deficient in three of the primary DNA repair pathways. The mutS (error-prone mismatch repair),1 mutD (deficient in 3´- to 5´exonuclease of DNA polymerase III)2 and mutT (unable to hydrolyze 8-oxodGTP)3 mut ...
evolution - Janelia Research Campus
evolution - Janelia Research Campus

... class of mutations with dramatic effects. It is possible that some mutations, for example, those in cis-regulatory DNA, have few or no pleiotropic effects and may be the predominant source of morphological evolution. In contrast, mutations causing dramatic phenotypic effects, although superficially ...
Slide 1
Slide 1

... negative happenings to the individual  An inherited gene that results in death is a lethal gene  The time at which lethal genes exert their deadly influence varies from zygote stage to an adult ...
Solid Tumour Section Thyroid: Papillary carcinoma Atlas of Genetics and Cytogenetics
Solid Tumour Section Thyroid: Papillary carcinoma Atlas of Genetics and Cytogenetics

... In this oncogene, the TK domain of RET is fused to sequences derived from a previously unknown gene named ELE1 (otherwise named RFG). ELE1 is localized in the same chromosomal region of RET, 10q11.2. ...
L13 Chromosomal Basis of Inheritance Fa08
L13 Chromosomal Basis of Inheritance Fa08

... – The farther apart two genes are, the higher the probability that a crossover will occur between them and therefore the higher the recombination frequency ...
WJG-23-1787
WJG-23-1787

... illustrated in Figure 4A to identify the miRNA-mRNA regulatory network in L02 cells transfected with HBx. Through analysis using miRnada and TargetScan software, potential miRNA targets were successfully predicted. In combination with the expression pattern of target genes (Figure 1A), we generated ...
Document
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... Myoglobin (Mb) Oxygen binding/storage protein in muscle; may also play a part in local oxygen transport. O2 binds to haem. Maintenance of haem in Fe2+ form is necessary for O2 binding. Mb is a monomeric protein of about 150 aa. Haemoglobin A (HbA) O2 carrier in blood (red cells). Tetramer: 22. Qua ...
Heredity Notes
Heredity Notes

...  These characteristics are called traits. Traits depend on the types of proteins that the 4 bases (A,C,G,T) make up. Parents pass on copies of their DNA to their offspring.  The DNA from each parent combines to form the DNA of the offspring.  How the offspring develops depends on the instructions ...
The genetics of cystic fibrosis
The genetics of cystic fibrosis

... Milder phenotypic (clinical) expression of CF Since the introduction of sweat testing, atypical individuals with some features of CF but with normal or borderline sweat tests have been reported. Clinical symptoms and signs in these people include mild lung disease (Gan et al, 1995), pancreatitis (Co ...
Chapter 15 – DNA to Proteins
Chapter 15 – DNA to Proteins

... RNA—the Intermediary between Genes and Proteins • François Jacob and Jacques Monod proposed that RNA molecules act as a link between genes, found in the cell’s nucleus, and the protein-manufacturing centers, located in the cytoplasm. • Messenger RNA (mRNA) was found to carry information from DNA to ...
We describe a method for the formation of hybrid
We describe a method for the formation of hybrid

... with the vector sequences between them are supplied to the host cell as parts of a linear DNA structure. Circularization of such structures by recombination within the interferon genes leads to replicating plasmids. An appropriate arrangement of two antibiotic resistance genes allows the easy select ...
A multistep epigenetic switch enables the stable
A multistep epigenetic switch enables the stable

... that partial expression is not due to the fact that the deletions shift the a mutant in which these sequences were deleted (cHNL332; Fig. 4c). sequences of upstream genes closer to agn43 (cHNL330; Fig. 2d). The above experiments identified two different partial states. One Together, these data sugge ...
The majority of genes in the pathogenic Neisseria species are
The majority of genes in the pathogenic Neisseria species are

... than the other. For example, for a pathogen gene that was highly divergent in N. lactamica there may still be a low but sufficient signal intensity above background to call the gene as present in N. lactamica using the pON metric, yet this level of hybridisation would be insignificant when compared ...
Slide 1
Slide 1

... – Gene cloning leads to the production of multiple, identical copies of a gene-carrying piece of DNA. – Recombinant DNA is formed by joining nucleotide sequences from two different sources. – One source contains the gene that will be cloned. – Another source is a gene carrier, called a vector. – Pla ...
Chapter 13 - HCC Learning Web
Chapter 13 - HCC Learning Web

A Classification of Microarray Gene Expression Data Using
A Classification of Microarray Gene Expression Data Using

... expression levels of huge number of different genes simultaneously [9]. It is possible for the biologists to concurrently evaluate the expressions of thousands of genes in a single experiment by the aid of microarray technologies [5] [15] [19]. This technology provides a unique tool, which has been ...
Transcription response in the TGF-beta pathway Francisco Manuel
Transcription response in the TGF-beta pathway Francisco Manuel

... The Illumina sequencing technology (Figure 5), which relies on proprietary reversible terminator­based  sequencing chemistry. The first step prior to sequencing is the library preparation. Adaptor sequences  are ligated to the DNA fragments. The ligated fragments are then amplified and immobilized i ...
Supplementary Information (doc 1117K)
Supplementary Information (doc 1117K)

Leukaemia Section t(3;8)(q26;q24) Atlas of Genetics and Cytogenetics in Oncology and Haematology
Leukaemia Section t(3;8)(q26;q24) Atlas of Genetics and Cytogenetics in Oncology and Haematology

... Acute myeloid leukemia of mostly M2, M4 or M5 FAB subtype or high grade MDS. Marked trilineage dysplasia and megakaryocytic hyperplasia, may be associated with peripheral blood thrombocytosis giving the so-call 3q21q26 syndrome. ...
Introduction to Microarray Analysis (Section D1)
Introduction to Microarray Analysis (Section D1)

... Microarrays work by exploiting the ability of a given mRNA molecule (target) to bind specifically to, or hybridize to, the DNA template (probe) from which it originated. This mechanism acts as both an "on/off" switch to control which genes are expressed in a cell as well as a "volume control" that i ...
Mapping Chromosome Combined
Mapping Chromosome Combined

... 2. In the same lab, your colleague is studying the genes for eye colour and body colour found on chromosome 2. She crosses a homozygous recessive purple-eyed, black-bodied fruit fly (ppgg) with a heterozygous normal-eyed, normal-coloured fly (PpGg). She counts 1000 offspring and finds 454 flies with ...
Medical Genetics
Medical Genetics

... Scientists have tried to take advantage of this capability and manipulate the virus genome to remove disease-causing genes and insert therapeutic genes. ...
Mechanisms and implications of genomic
Mechanisms and implications of genomic

... growth curve for non-viable cells generates a growth curve parallel to but several cell divisions behind the control. This implies that lethal mutations are not due to failure to plate but represent true loss of clonogenicity/viability during the cell division cycle (Seymour and Mothersill, 1988, 19 ...
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Oncogenomics



Oncogenomics is a relatively new sub-field of genomics that applies high throughput technologies to characterize genes associated with cancer. Oncogenomics is synonymous with ""cancer genomics"". Cancer is a genetic disease caused by accumulation of mutations to DNA leading to unrestrained cell proliferation and neoplasm formation. The goal of oncogenomics is to identify new oncogenes or tumor suppressor genes that may provide new insights into cancer diagnosis, predicting clinical outcome of cancers, and new targets for cancer therapies. The success of targeted cancer therapies such as Gleevec, Herceptin, and Avastin raised the hope for oncogenomics to elucidate new targets for cancer treatment.Besides understanding the underlying genetic mechanisms that initiates or drives cancer progression, one of the main goals of oncogenomics is to allow for the development of personalized cancer treatment. Cancer develops due to an accumulation of mutations in DNA. These mutations accumulate randomly, and thus, different DNA mutations and mutation combinations exist between different individuals with the same type of cancer. Thus, identifying and targeting specific mutations which have occurred in an individual patient may lead to increased efficacy of cancer therapy.The completion of the Human Genome Project has greatly facilitated the field of oncogenomics and has increased the abilities of researchers to find cancer causing genes. In addition, the sequencing technologies now available for sequence generation and data analysis have been applied to the study of oncogenomics. With the amount of research conducted on cancer genomes and the accumulation of databases documenting the mutational changes, it has been predicted that the most important cancer-causing mutations, rearrangements, and altered expression levels will be cataloged and well characterized within the next decade.Cancer research may look either on the genomic level at DNA mutations, the epigenetic level at methylation or histone modification changes, the transcription level at altered levels of gene expression, or the protein level at altered levels of protein abundance and function in cancer cells. Oncogenomics focuses on the genomic, epigenomic, and transcript level alterations in cancer.
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