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Plasmid Isolation
Plasmid Isolation

... • Each restriction enzyme cuts at different sites • The cut can leave either blunt or sticky ends • If the plasmid and gene to be inserted into the plasmid are cut with the same restriction enzyme, the sticky ends have overlapping base pairs and can anneal with DNA ligase • But, the cut ends can ann ...
PCR
PCR

... Polymerase Chain Reaction ...
Mutation detection using nucleotide analogs that alter
Mutation detection using nucleotide analogs that alter

... strand consistently causes that DNA to migrate two bases slower than expected in a sequencing gel (16). Prompted by these observations, we have found that incorporation of biotin-11-dUTP, a commercially available analog of TTP, into a DNA strand causes a one nucleotide mobility shift when the DNA is ...
G-quadruplex and G-rich sequence stimulate Pif1p
G-quadruplex and G-rich sequence stimulate Pif1p

... duplex DNA, then how the helicase toggles its function or activity from G4 unfolding to duplex unwinding? Concerning the first question, there are many studies showing that as formation of such stable G4 structures may threaten genomic stability, cells have evolved a special family of helicases to u ...
DNA Replication
DNA Replication

... – Complementary base pairs have much higher stability than mismatched pairs – This feature only accounts for part of the fidelity • It has an error rate of 1 per 1,000 nucleotides ...
DNA Replication
DNA Replication

... 1. Finish the DNA puzzle activity from yesterday. Turn in to basket 2. Finish the DNA Structure and Function practice questions. Turn in to basket. 3. Work on completing Castle Learning or Missing ...
File
File

... and two replication forks form. 2. New bases are added following the base pairing rules. 3. For example: If there is adenine on the template strand, then a nucleotide with thymine is added to the newly forming strand. 4. New nucleotides are added in this way until the entire molecule has ...
EpiMark® Methylated DNA Enrichment Kit | NEB
EpiMark® Methylated DNA Enrichment Kit | NEB

... Magnetic Bead). Two Fc domains can be bound to one site on protein A with high affinity (Kd=10-7). As the Fc fragment is a dimer, four MBD2 domains are exposed to the solvent per molecule of protein A, increasing the relative equilibrium constant 100-fold. This stable complex will selectively bind d ...
Chapter 12 - Cloudfront.net
Chapter 12 - Cloudfront.net

... explained how DNA carried information and could be copied. ...
Notes - The University of Sydney
Notes - The University of Sydney

... Another Dale bedtime story. It all started with DNA polymerase I. This enzyme was first discovered by Arthur Kornberg in 1956 (the enzyme’s isolation is celebrating 50 years this year). There had been a search for the enzymes responsible for DNA synthesis since the structure of DNA had been solved ( ...
Chapter 10 #1
Chapter 10 #1

... between genes and proteins – The one gene–one enzyme hypothesis was based on studies of inherited metabolic diseases – The one gene–one protein hypothesis expands the relationship to proteins other than enzymes – The one gene–one polypeptide hypothesis recognizes that some proteins are composed of ...
The search for small regulatory RNA
The search for small regulatory RNA

... siRNA – Inhibits expression of exogenous genes RNAi – Human exploitation of phenomenon miRNA – Inhibits expression of endogenous genes ...
Chapter 16
Chapter 16

... structures ...
DNA Structure DNA Molecular Structure 5/29/2012 Chapter 4
DNA Structure DNA Molecular Structure 5/29/2012 Chapter 4

... – checks new base pairs and tends to fix mistakes – result is only 1 error per 1 billion bases replicated • mutations - changes in DNA structure due to replication errors or environmental factors (radiation, viruses, chemicals) – some mutations = no problem/some kill the cell, turn it cancerous or c ...
No Slide Title
No Slide Title

... nearly every round of DNA replication that interrupt the replication fork and require general recombination mechanisms to repair. • Cross-over during meiosis also use the same mechanism of general recombination. ...
Replication of DNA
Replication of DNA

... and two replication forks form. 2. New bases are added following the base pairing rules. 3. For example: If there is adenine on the template strand, then a nucleotide with thymine is added to the newly forming strand. 4. New nucleotides are added in this way until the entire molecule has ...
REPLICATION OF GENETIC INFORMATION
REPLICATION OF GENETIC INFORMATION

... ---------------------------------------------------------------------------------- tRNA (transfer RNA) - brings amino acids to ribosomes during translation  rRNA (ribosomal RNA) - with ribosomal proteins makes up the ribosomes (organelles that translate the mRNA)  mRNA (messenger RNA) - encodes a ...
Chap 12 Jeopardy #1 - local.brookings.k12.sd.us
Chap 12 Jeopardy #1 - local.brookings.k12.sd.us

... A virus that infects bacteria ...
DNA
DNA

... 1. What DNA would a reproduced cell contain without DNA replication? ...
Section 1: The Structure of DNA
Section 1: The Structure of DNA

... The relationship between genes and their effects is complex. Despite the neatness of the genetic code, every gene cannot be simply linked to a single outcome. Some genes are expressed only at certain times or under specific conditions. Variations and mistakes can occur at each of the steps in replic ...
Chapter 5 Gases - Colorado Mountain College
Chapter 5 Gases - Colorado Mountain College

... • The sequence of amino acids in a polypeptide chain corresponds to a sequence of nucleotide bases in DNA called a gene • The conversion of information in DNA to protein occurs in two steps: transcription and translation ...
Ch 12/13 Notes
Ch 12/13 Notes

... that info is transferred from DNA to RNA to proteins.  Although some organisms show slight variations in their amino acids the code is always read in the same direction and three bases at a time. This shows remarkable unity at life’s most basic level, the molecular biology of the gene. ...
chapter9_From DNA to Protein(1
chapter9_From DNA to Protein(1

... • The sequence of amino acids in a polypeptide chain corresponds to a sequence of nucleotide bases in DNA called a gene • The conversion of information in DNA to protein occurs in two steps: transcription and translation ...
File
File

... 6) The other strand (the 3’  5’) is called the LAGGING strand. DNA can only be read in the 5’  3’ direction, so the lagging strand cannot start immediately – it has to wait until a section of DNA has been separated. Thus, a new primer is added by RNA primase allowing the exposed section of DNA to ...
SiRNA and Epigenetic
SiRNA and Epigenetic

...  Synthetic siRNA molecules that bind to gene promoters can repress transcription of that gene. Repression is mediated by methylation of the DNA in the promoter ; methylation of histones in the vicinity.  Rnai can use as a weapon to counter infections by RNA viruses by destroying their mRNA’s.  Sc ...
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Helicase



Helicases are a class of enzymes vital to all living organisms. Their main function is to unpackage an organism's genes. They are motor proteins that move directionally along a nucleic acid phosphodiester backbone, separating two annealed nucleic acid strands (i.e., DNA, RNA, or RNA-DNA hybrid) using energy derived from ATP hydrolysis. There are many helicases resulting from the great variety of processes in which strand separation must be catalyzed. Approximately 1% of eukaryotic genes code for helicases. The human genome codes for 95 non-redundant helicases: 64 RNA helicases and 31 DNA helicases. Many cellular processes, such as DNA replication, transcription, translation, recombination, DNA repair, and ribosome biogenesis involve the separation of nucleic acid strands that necessitates the use of helicases.
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